Wall clock time and date at job start Tue Mar 31 2020 19:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46772 * 2 1 4 4 C 1.50702 * 109.46952 * 240.00151 * 2 1 3 5 5 H 1.07995 * 119.99716 * 245.45968 * 4 2 1 6 6 C 1.37875 * 119.99887 * 65.45033 * 4 2 1 7 7 N 1.31514 * 120.00136 * 9.62320 * 6 4 2 8 8 Si 1.86803 * 119.99805 * 189.61745 * 6 4 2 9 9 H 1.48501 * 109.46937 * 85.00026 * 8 6 4 10 10 H 1.48505 * 109.47108 * 205.00103 * 8 6 4 11 11 H 1.48503 * 109.46925 * 324.99894 * 8 6 4 12 12 N 1.46500 * 109.46861 * 120.00347 * 2 1 3 13 13 C 1.46490 * 120.00502 * 59.99979 * 12 2 1 14 14 C 1.34784 * 119.99463 * 239.99742 * 12 2 1 15 15 O 1.21286 * 119.99977 * 359.72669 * 14 12 2 16 16 C 1.50700 * 119.99911 * 180.02562 * 14 12 2 17 17 C 1.52994 * 109.46983 * 180.02562 * 16 14 12 18 18 C 1.50700 * 109.46983 * 180.02562 * 17 16 14 19 19 N 1.30260 * 126.18301 * 89.69191 * 18 17 16 20 20 N 1.28665 * 109.56892 * 179.82637 * 19 18 17 21 21 C 1.31333 * 109.25128 * 0.43992 * 20 19 18 22 22 C 1.47697 * 126.38982 * 179.76914 * 21 20 19 23 23 C 1.39749 * 122.89230 * 359.95944 * 22 21 20 24 24 C 1.33098 * 113.73855 * 180.02562 * 23 22 21 25 25 S 1.75720 * 109.81035 * 359.97438 * 24 23 22 26 26 C 1.34693 * 122.88718 * 179.66721 * 22 21 20 27 27 O 1.34574 * 126.17933 * 269.99981 * 18 17 16 28 28 H 1.09000 * 109.47027 * 183.28986 * 1 2 3 29 29 H 1.08998 * 109.47094 * 303.28141 * 1 2 3 30 30 H 1.08994 * 109.47262 * 63.28842 * 1 2 3 31 31 H 0.96995 * 119.99711 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.46998 * 269.99672 * 13 12 2 33 33 H 1.09001 * 109.47343 * 29.99572 * 13 12 2 34 34 H 1.09002 * 109.47211 * 149.99432 * 13 12 2 35 35 H 1.08998 * 109.46637 * 300.00196 * 16 14 12 36 36 H 1.08997 * 109.47015 * 59.99699 * 16 14 12 37 37 H 1.08998 * 109.47569 * 299.99594 * 17 16 14 38 38 H 1.08997 * 109.47516 * 59.99974 * 17 16 14 39 39 H 1.08001 * 123.13272 * 359.96518 * 23 22 21 40 40 H 1.08004 * 125.09146 * 179.97438 * 24 23 22 41 41 H 1.08001 * 124.74666 * 0.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5786 -1.6370 -1.1339 6 6 1.7944 -0.1774 -2.4796 7 7 1.3001 1.0360 -2.5936 8 14 2.1742 -1.1788 -4.0102 9 1 1.0213 -2.0607 -4.3233 10 1 2.4213 -0.2625 -5.1525 11 1 3.3821 -2.0090 -3.7713 12 7 2.0183 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7932 -0.0356 2.0833 15 8 3.0904 1.1241 1.8889 16 6 3.2961 -0.7462 3.3135 17 6 4.1454 0.2157 4.1466 18 6 4.6487 -0.4951 5.3765 19 7 5.7614 -1.1649 5.4763 20 7 5.8755 -1.6359 6.6682 21 6 4.8244 -1.2870 7.3741 22 6 4.5648 -1.6295 8.7872 23 6 5.4457 -2.3940 9.5569 24 6 5.0315 -2.5930 10.8061 25 16 3.4818 -1.8022 11.0527 26 6 3.4613 -1.2271 9.4464 27 8 4.0270 -0.5573 6.5684 28 1 -0.3633 -1.0260 0.0590 29 1 -0.3633 0.5639 0.8591 30 1 -0.3633 0.4619 -0.9179 31 1 1.1331 1.4110 -3.4723 32 1 0.7376 -2.1443 1.9993 33 1 1.5295 -2.5969 0.4708 34 1 2.4630 -2.5819 1.9863 35 1 2.4485 -1.0891 3.9068 36 1 3.9017 -1.6024 3.0165 37 1 4.9930 0.5590 3.5535 38 1 3.5394 1.0716 4.4437 39 1 6.3755 -2.7876 9.1737 40 1 5.5675 -3.1562 11.5557 41 1 2.6725 -0.6270 9.0174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103442386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:06 Heat of formation + Delta-G solvation = 11.212178 kcal Electronic energy + Delta-G solvation = -25204.234157 eV Core-core repulsion = 21405.186396 eV Total energy + Delta-G solvation = -3799.047761 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.29586 -40.81109 -39.17951 -37.33672 -37.24424 -35.37761 -34.69697 -32.24989 -31.30875 -30.28887 -27.65117 -27.29877 -27.08891 -25.61002 -24.18078 -23.34992 -22.44867 -20.63492 -19.93926 -19.01799 -18.62709 -18.42556 -18.26986 -17.82695 -17.10944 -16.90163 -16.50828 -16.11867 -15.45463 -14.95342 -14.65935 -14.52300 -14.36948 -14.26519 -14.00145 -13.77255 -13.67115 -13.62130 -13.54747 -13.43586 -13.07070 -12.95007 -12.85173 -12.76046 -12.61943 -12.44898 -12.25071 -12.10883 -12.06645 -11.90724 -11.23487 -11.20808 -10.65880 -10.47728 -9.95998 -9.33721 -9.30411 -8.16510 -6.29126 -0.61571 0.23615 0.49213 0.85672 1.01596 1.07272 1.42309 1.42893 1.52360 1.77798 1.83130 2.28802 2.46170 2.77129 3.12815 3.29241 3.60065 3.67562 3.86281 3.94565 4.07439 4.16995 4.27222 4.38598 4.41025 4.48517 4.54826 4.71855 4.75600 4.78443 4.86359 4.88471 4.93363 5.02023 5.06037 5.13058 5.22052 5.48497 5.54120 5.67940 5.99568 6.14219 6.78560 6.82714 7.10685 7.31546 7.47040 8.90242 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.027766 B = 0.001935 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.174382 B =14467.273504 C =14716.446937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.257 3.743 3 H 0.017 0.983 4 C -0.539 4.539 5 H 0.063 0.937 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.962 3.038 9 H -0.266 1.266 10 H -0.288 1.288 11 H -0.270 1.270 12 N -0.600 5.600 13 C 0.076 3.924 14 C 0.500 3.500 15 O -0.598 6.598 16 C -0.120 4.120 17 C -0.002 4.002 18 C 0.183 3.817 19 N -0.307 5.307 20 N -0.305 5.305 21 C 0.230 3.770 22 C -0.071 4.071 23 C -0.118 4.118 24 C -0.222 4.222 25 S 0.275 5.725 26 C -0.223 4.223 27 O -0.220 6.220 28 H 0.053 0.947 29 H 0.026 0.974 30 H 0.048 0.952 31 H 0.264 0.736 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.152 0.848 40 H 0.204 0.796 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.768 -9.660 29.970 31.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.155 3.845 3 H 0.035 0.965 4 C -0.578 4.578 5 H 0.081 0.919 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.787 3.213 9 H -0.192 1.192 10 H -0.214 1.214 11 H -0.195 1.195 12 N -0.330 5.330 13 C -0.066 4.066 14 C 0.289 3.711 15 O -0.480 6.480 16 C -0.160 4.160 17 C -0.041 4.041 18 C -0.028 4.028 19 N -0.153 5.153 20 N -0.152 5.152 21 C 0.020 3.980 22 C -0.088 4.088 23 C -0.146 4.146 24 C -0.357 4.357 25 S 0.541 5.459 26 C -0.363 4.363 27 O -0.100 6.100 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.140 0.860 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.131 0.869 39 H 0.170 0.830 40 H 0.221 0.779 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.017 -9.378 30.629 32.096 hybrid contribution 0.117 0.461 -2.520 2.565 sum 2.134 -8.917 28.109 29.566 Atomic orbital electron populations 1.21800 0.97187 1.00017 0.99460 1.18571 0.91437 0.92793 0.81660 0.96533 1.21564 1.36376 1.08590 0.91256 0.91909 1.25751 0.95121 0.95497 1.02147 1.70109 1.45593 1.15268 1.24713 0.85523 0.78873 0.78479 0.78464 1.19154 1.21436 1.19474 1.48219 1.49040 1.13382 1.22372 1.21897 1.01397 0.80540 1.02796 1.20950 0.78408 0.86671 0.85108 1.90656 1.59786 1.19482 1.78123 1.21581 1.01765 0.99152 0.93541 1.19915 1.01996 0.96664 0.85528 1.28103 0.89269 0.98473 0.86996 1.74340 1.17194 1.11874 1.11897 1.74715 1.20766 1.21428 0.98307 1.25471 0.86083 0.92081 0.94408 1.16472 0.98932 1.07486 0.85879 1.20097 1.01129 0.99874 0.93483 1.26066 1.01192 1.07873 1.00565 1.83100 1.15988 1.42983 1.03791 1.25655 1.02094 1.06215 1.02349 1.84880 1.46286 1.57460 1.21422 0.92775 0.95505 0.93272 0.92715 0.91198 0.91196 0.89415 0.86023 0.86862 0.86801 0.86912 0.83001 0.77901 0.80026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.83 9.12 71.98 0.66 -5.17 16 2 C 0.26 13.13 2.50 44.25 0.11 13.24 16 3 H 0.02 1.03 6.84 -2.39 -0.02 1.01 16 4 C -0.54 -29.02 8.01 25.60 0.20 -28.82 16 5 H 0.06 3.27 7.16 -2.91 -0.02 3.25 16 6 C 0.01 0.81 5.17 84.65 0.44 1.25 16 7 N -0.92 -53.69 12.17 21.45 0.26 -53.43 16 8 Si 0.96 43.02 29.55 68.60 2.03 45.04 16 9 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 10 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 12 N -0.60 -24.30 2.75 -826.78 -2.28 -26.57 16 13 C 0.08 2.24 9.16 127.77 1.17 3.41 16 14 C 0.50 19.33 7.67 87.66 0.67 20.00 16 15 O -0.60 -28.70 15.31 -3.05 -0.05 -28.75 16 16 C -0.12 -3.12 4.23 29.85 0.13 -2.99 16 17 C 0.00 -0.05 5.13 29.85 0.15 0.10 16 18 C 0.18 4.90 7.73 88.34 0.68 5.58 16 19 N -0.31 -9.50 12.21 -165.27 -2.02 -11.52 16 20 N -0.31 -9.04 12.17 -166.31 -2.02 -11.06 16 21 C 0.23 5.75 8.08 87.27 0.70 6.45 16 22 C -0.07 -1.29 5.79 -21.23 -0.12 -1.42 16 23 C -0.12 -1.71 10.03 21.48 0.22 -1.49 16 24 C -0.22 -1.79 11.19 66.67 0.75 -1.05 16 25 S 0.28 1.90 23.09 -56.49 -1.30 0.59 16 26 C -0.22 -2.89 10.72 67.01 0.72 -2.17 16 27 O -0.22 -5.54 10.85 -10.18 -0.11 -5.65 16 28 H 0.05 2.21 7.56 -2.39 -0.02 2.19 16 29 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 2.53 6.84 -2.39 -0.02 2.51 16 31 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 32 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.07 2.25 6.92 -2.39 -0.02 2.24 16 34 H 0.09 2.00 6.44 -2.39 -0.02 1.98 16 35 H 0.12 2.48 8.11 -2.39 -0.02 2.46 16 36 H 0.11 2.69 7.40 -2.39 -0.02 2.67 16 37 H 0.11 3.16 8.10 -2.39 -0.02 3.14 16 38 H 0.11 2.76 8.10 -2.39 -0.02 2.74 16 39 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 40 H 0.20 0.38 8.06 -2.91 -0.02 0.36 16 41 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -74.97 366.18 2.05 -72.92 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 1.06 Total: 11.52 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 6.48 Total: 6.91 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -6.06 Total: -102.58 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.16 Total: -34.40 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -1.30 Total: 0.59 kcal Total: -74.97 2.05 -72.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.130 kcal (2) G-P(sol) polarization free energy of solvation -74.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds