Wall clock time and date at job start Tue Mar 31 2020 18:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.46789 * 2 1 4 4 C 1.38231 * 119.99937 * 90.00529 * 3 2 1 5 5 C 1.38240 * 120.00155 * 179.97438 * 4 3 2 6 6 C 1.38233 * 119.99540 * 0.02562 * 5 4 3 7 7 S 1.76202 * 119.99699 * 179.97438 * 6 5 4 8 8 O 1.42100 * 106.40546 * 336.46703 * 7 6 5 9 9 O 1.42100 * 106.40509 * 203.54079 * 7 6 5 10 10 N 1.65606 * 107.21759 * 90.00144 * 7 6 5 11 11 C 1.39987 * 119.99711 * 64.99690 * 10 7 6 12 12 C 1.40430 * 125.97440 * 179.97438 * 11 10 7 13 13 C 1.35251 * 107.86093 * 179.70447 * 12 11 10 14 14 N 1.34964 * 107.86304 * 0.26438 * 13 12 11 15 15 C 1.46498 * 125.97154 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47061 * 125.00273 * 15 14 13 17 17 H 1.08006 * 119.99583 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00283 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99895 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00232 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47102 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47485 * 120.00193 * 20 18 16 23 23 H 1.48501 * 109.47187 * 240.00056 * 20 18 16 24 24 N 1.31222 * 125.97662 * 0.17698 * 11 10 7 25 25 C 1.38226 * 120.00387 * 0.25845 * 6 5 4 26 26 C 1.38235 * 120.00114 * 270.02101 * 3 2 1 27 27 H 1.09006 * 109.47138 * 299.99661 * 1 2 3 28 28 H 1.08992 * 109.47426 * 59.99738 * 1 2 3 29 29 H 1.08996 * 109.46794 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46889 * 240.00319 * 2 1 3 31 31 H 1.08999 * 109.47251 * 119.99615 * 2 1 3 32 32 H 1.08006 * 120.00415 * 359.97438 * 4 3 2 33 33 H 1.07998 * 120.00127 * 179.97438 * 5 4 3 34 34 H 0.97000 * 120.00412 * 245.00391 * 10 7 6 35 35 H 1.08002 * 126.07243 * 359.97438 * 12 11 10 36 36 H 1.08003 * 126.06585 * 180.28770 * 13 12 11 37 37 H 1.09000 * 109.47389 * 245.00708 * 15 14 13 38 38 H 1.09000 * 109.46879 * 5.00537 * 15 14 13 39 39 H 0.96993 * 120.00234 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.00248 * 179.72704 * 25 6 5 41 41 H 1.07998 * 119.99962 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7239 3.3757 1.1972 6 6 2.9542 4.0273 0.0000 7 16 3.5414 5.6886 0.0000 8 8 3.1621 6.2483 1.2499 9 8 3.1617 6.2485 -1.2496 10 7 5.1962 5.6236 -0.0001 11 6 5.8753 5.0841 -1.0990 12 6 7.2684 4.9680 -1.2319 13 6 7.5244 4.3919 -2.4285 14 7 6.3424 4.1563 -3.0358 15 6 6.1592 3.5427 -4.3535 16 6 5.2432 2.3524 -4.2303 17 1 4.8377 2.0805 -3.2669 18 6 4.9219 1.6112 -5.3476 19 7 5.4153 1.9426 -6.5208 20 14 3.7859 0.1362 -5.1950 21 1 3.3695 -0.0234 -3.7786 22 1 2.5850 0.3465 -6.0428 23 1 4.4997 -1.0867 -5.6425 24 7 5.3215 4.6019 -2.1865 25 6 2.7181 3.3777 -1.1971 26 6 2.2622 2.0727 -1.1971 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0824 1.5635 2.1325 33 1 2.9036 3.8849 2.1325 34 1 5.6949 5.9591 0.7612 35 1 8.0047 5.2790 -0.5055 36 1 8.5013 4.1611 -2.8271 37 1 5.7195 4.2706 -5.0353 38 1 7.1252 3.2192 -4.7411 39 1 5.1890 1.4214 -7.3069 40 1 2.8938 3.8884 -2.1324 41 1 2.0815 1.5639 -2.1324 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000117740978.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:09 Heat of formation + Delta-G solvation = 22.786169 kcal Electronic energy + Delta-G solvation = -27027.852585 eV Core-core repulsion = 23229.306709 eV Total energy + Delta-G solvation = -3798.545875 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.53043 -39.26861 -37.06419 -35.68822 -35.21339 -34.26257 -33.32339 -30.85983 -30.80024 -29.64125 -29.41205 -26.70241 -24.28206 -23.22772 -22.71287 -21.24481 -20.83734 -20.63484 -18.92484 -17.77207 -17.28014 -16.77185 -16.64637 -15.78544 -15.52165 -15.27327 -14.71358 -14.43905 -14.29457 -14.14232 -13.71653 -13.63809 -13.24149 -13.11568 -12.86738 -12.78693 -12.53959 -12.10781 -11.99964 -11.95816 -11.86582 -11.73992 -11.42630 -11.35336 -11.28556 -10.99137 -10.86376 -10.80731 -10.43567 -10.31407 -9.97763 -9.60515 -9.00411 -8.81440 -8.70467 -8.37080 -7.67775 -6.30781 -4.35433 0.46744 0.99667 1.52522 2.64322 2.80516 3.15010 3.23069 3.25669 3.30367 3.53954 3.67155 3.98652 4.24035 4.52899 4.67145 4.81346 4.99203 5.05736 5.09238 5.12989 5.23139 5.38465 5.46254 5.49933 5.59528 5.76935 5.90839 5.92018 6.01985 6.08251 6.11999 6.16315 6.26606 6.32017 6.40940 6.61955 6.65559 6.94739 7.05222 7.07950 7.31312 7.62984 7.79691 7.90853 8.42232 8.72703 9.29942 10.78442 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.008168 B = 0.006502 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3427.208658 B = 4305.652693 C = 7003.608038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.027 4.027 4 C -0.150 4.150 5 C -0.022 4.022 6 C -0.679 4.679 7 S 2.694 3.306 8 O -0.965 6.965 9 O -0.931 6.931 10 N -1.015 6.015 11 C 0.277 3.723 12 C -0.305 4.305 13 C 0.069 3.931 14 N -0.313 5.313 15 C 0.255 3.745 16 C -0.527 4.527 17 H 0.071 0.929 18 C 0.064 3.936 19 N -0.893 5.893 20 Si 0.900 3.100 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.282 1.282 24 N -0.303 5.303 25 C 0.020 3.980 26 C -0.137 4.137 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.126 0.874 33 H 0.135 0.865 34 H 0.430 0.570 35 H 0.140 0.860 36 H 0.171 0.829 37 H 0.049 0.951 38 H 0.058 0.942 39 H 0.267 0.733 40 H 0.156 0.844 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.960 -0.168 14.058 14.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.132 4.132 3 C -0.028 4.028 4 C -0.169 4.169 5 C -0.042 4.042 6 C -0.768 4.768 7 S 2.786 3.214 8 O -0.955 6.955 9 O -0.921 6.921 10 N -0.768 5.768 11 C 0.021 3.979 12 C -0.339 4.339 13 C -0.083 4.083 14 N -0.093 5.093 15 C 0.138 3.862 16 C -0.566 4.566 17 H 0.090 0.910 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.727 3.273 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.208 1.208 24 N -0.134 5.134 25 C 0.001 3.999 26 C -0.156 4.156 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.144 0.856 33 H 0.153 0.847 34 H 0.266 0.734 35 H 0.158 0.842 36 H 0.188 0.812 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.173 0.827 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.711 0.202 12.979 13.501 hybrid contribution 0.698 -1.332 0.680 1.651 sum -3.013 -1.130 13.659 14.033 Atomic orbital electron populations 1.21733 0.94293 1.01870 1.02417 1.20691 0.96492 0.92564 1.03435 1.20238 0.93431 0.95678 0.93430 1.21000 1.03224 0.95109 0.97586 1.20801 0.92975 0.94225 0.96158 1.30601 1.20346 1.26099 0.99725 1.01909 0.71807 0.74175 0.73553 1.93577 1.80758 1.76819 1.44341 1.93635 1.80102 1.75166 1.43160 1.52592 1.26010 1.73954 1.24257 1.18673 0.91494 0.99220 0.88528 1.20838 0.93391 1.18442 1.01234 1.22436 0.92388 0.99624 0.93824 1.49097 1.01427 1.42795 1.16006 1.19829 0.99424 0.93534 0.73387 1.21267 1.29136 1.10784 0.95395 0.91035 1.24911 0.96189 0.97956 0.94847 1.69915 1.44163 1.40044 0.98997 0.86393 0.80489 0.81884 0.78491 1.19332 1.20603 1.20791 1.77386 1.13377 1.21849 1.00750 1.21216 0.87568 0.93839 0.97316 1.21281 1.01091 0.95187 0.97993 0.92485 0.92254 0.92197 0.90387 0.90689 0.85591 0.84747 0.73432 0.84228 0.81192 0.93343 0.92402 0.92336 0.82651 0.85064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.89 37.16 0.37 -1.09 16 2 C -0.09 -1.09 6.06 -27.88 -0.17 -1.26 16 3 C -0.03 -0.39 5.13 -104.62 -0.54 -0.93 16 4 C -0.15 -1.99 9.70 -39.58 -0.38 -2.38 16 5 C -0.02 -0.32 9.52 -39.58 -0.38 -0.69 16 6 C -0.68 -11.30 5.91 -39.59 -0.23 -11.54 16 7 S 2.69 44.72 5.50 -107.50 -0.59 44.13 16 8 O -0.96 -16.01 17.28 -57.17 -0.99 -17.00 16 9 O -0.93 -18.84 16.49 -57.17 -0.94 -19.78 16 10 N -1.01 -15.17 5.91 31.39 0.19 -14.99 16 11 C 0.28 5.04 7.72 -154.55 -1.19 3.85 16 12 C -0.31 -4.93 10.83 -39.82 -0.43 -5.36 16 13 C 0.07 1.19 11.44 -17.24 -0.20 0.99 16 14 N -0.31 -6.68 3.67 -62.56 -0.23 -6.91 16 15 C 0.26 6.09 6.26 -5.19 -0.03 6.06 16 16 C -0.53 -13.69 9.24 -34.44 -0.32 -14.01 16 17 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -24.32 13.29 55.43 0.74 -23.59 16 20 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 N -0.30 -6.52 9.90 31.41 0.31 -6.20 16 25 C 0.02 0.37 8.71 -39.59 -0.34 0.02 16 26 C -0.14 -2.33 9.70 -39.58 -0.38 -2.71 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 31 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 32 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.13 1.59 7.62 -52.49 -0.40 1.19 16 34 H 0.43 4.68 8.96 -34.48 -0.31 4.37 16 35 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.17 2.29 8.06 -52.48 -0.42 1.86 16 37 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.06 1.34 8.07 -51.93 -0.42 0.92 16 39 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 40 H 0.16 3.18 6.89 -52.49 -0.36 2.82 16 41 H 0.13 2.24 8.06 -52.49 -0.42 1.81 16 LS Contribution 367.09 15.07 5.53 5.53 Total: -1.00 -32.42 367.09 -10.59 -43.01 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -5.26 Total: 8.10 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: -4.33 Total: -27.48 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 1.00 Total: -51.69 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -1.93 Total: -36.79 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 44.72 SS G_CDS: -0.59 Total: 44.13 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.42 -10.59 -43.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117740978.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.800 kcal (2) G-P(sol) polarization free energy of solvation -32.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds