Wall clock time and date at job start Tue Mar 31 2020 18:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.46789 * 2 1 4 4 C 1.38231 * 119.99937 * 90.00529 * 3 2 1 5 5 C 1.38240 * 120.00155 * 179.97438 * 4 3 2 6 6 C 1.38233 * 119.99540 * 0.02562 * 5 4 3 7 7 S 1.76202 * 119.99699 * 179.97438 * 6 5 4 8 8 O 1.42100 * 106.40546 * 336.46703 * 7 6 5 9 9 O 1.42100 * 106.40509 * 203.54079 * 7 6 5 10 10 N 1.65606 * 107.21759 * 90.00144 * 7 6 5 11 11 C 1.39987 * 119.99711 * 64.99690 * 10 7 6 12 12 C 1.40430 * 125.97440 * 179.97438 * 11 10 7 13 13 C 1.35251 * 107.86093 * 179.70447 * 12 11 10 14 14 N 1.34964 * 107.86304 * 0.26438 * 13 12 11 15 15 C 1.46498 * 125.97154 * 179.97438 * 14 13 12 16 16 C 1.50702 * 109.47061 * 125.00273 * 15 14 13 17 17 H 1.08006 * 119.99583 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00283 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99895 * 0.02562 * 18 16 15 20 20 Si 1.86792 * 120.00232 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47102 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47485 * 120.00193 * 20 18 16 23 23 H 1.48501 * 109.47187 * 240.00056 * 20 18 16 24 24 N 1.31222 * 125.97662 * 0.17698 * 11 10 7 25 25 C 1.38226 * 120.00387 * 0.25845 * 6 5 4 26 26 C 1.38235 * 120.00114 * 270.02101 * 3 2 1 27 27 H 1.09006 * 109.47138 * 299.99661 * 1 2 3 28 28 H 1.08992 * 109.47426 * 59.99738 * 1 2 3 29 29 H 1.08996 * 109.46794 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46889 * 240.00319 * 2 1 3 31 31 H 1.08999 * 109.47251 * 119.99615 * 2 1 3 32 32 H 1.08006 * 120.00415 * 359.97438 * 4 3 2 33 33 H 1.07998 * 120.00127 * 179.97438 * 5 4 3 34 34 H 0.97000 * 120.00412 * 245.00391 * 10 7 6 35 35 H 1.08002 * 126.07243 * 359.97438 * 12 11 10 36 36 H 1.08003 * 126.06585 * 180.28770 * 13 12 11 37 37 H 1.09000 * 109.47389 * 245.00708 * 15 14 13 38 38 H 1.09000 * 109.46879 * 5.00537 * 15 14 13 39 39 H 0.96993 * 120.00234 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.00248 * 179.72704 * 25 6 5 41 41 H 1.07998 * 119.99962 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0725 1.1971 5 6 2.7239 3.3757 1.1972 6 6 2.9542 4.0273 0.0000 7 16 3.5414 5.6886 0.0000 8 8 3.1621 6.2483 1.2499 9 8 3.1617 6.2485 -1.2496 10 7 5.1962 5.6236 -0.0001 11 6 5.8753 5.0841 -1.0990 12 6 7.2684 4.9680 -1.2319 13 6 7.5244 4.3919 -2.4285 14 7 6.3424 4.1563 -3.0358 15 6 6.1592 3.5427 -4.3535 16 6 5.2432 2.3524 -4.2303 17 1 4.8377 2.0805 -3.2669 18 6 4.9219 1.6112 -5.3476 19 7 5.4153 1.9426 -6.5208 20 14 3.7859 0.1362 -5.1950 21 1 3.3695 -0.0234 -3.7786 22 1 2.5850 0.3465 -6.0428 23 1 4.4997 -1.0867 -5.6425 24 7 5.3215 4.6019 -2.1865 25 6 2.7181 3.3777 -1.1971 26 6 2.2622 2.0727 -1.1971 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0824 1.5635 2.1325 33 1 2.9036 3.8849 2.1325 34 1 5.6949 5.9591 0.7612 35 1 8.0047 5.2790 -0.5055 36 1 8.5013 4.1611 -2.8271 37 1 5.7195 4.2706 -5.0353 38 1 7.1252 3.2192 -4.7411 39 1 5.1890 1.4214 -7.3069 40 1 2.8938 3.8884 -2.1324 41 1 2.0815 1.5639 -2.1324 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000117740978.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:08 Heat of formation + Delta-G solvation = 2.139317 kcal Electronic energy + Delta-G solvation = -27028.747899 eV Core-core repulsion = 23229.306709 eV Total energy + Delta-G solvation = -3799.441190 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.98153 -40.43198 -38.45629 -37.11150 -36.66108 -35.28328 -35.19454 -32.50411 -32.05918 -30.93369 -30.60109 -28.49203 -25.28838 -25.03271 -23.91377 -22.47045 -22.12869 -22.07946 -20.25442 -19.08590 -18.67275 -18.60343 -18.13582 -17.16443 -16.79545 -16.60199 -16.25554 -15.85250 -15.76201 -15.49058 -14.74781 -14.68755 -14.53237 -14.39720 -14.36272 -14.27097 -13.84976 -13.73559 -13.36304 -13.26714 -13.20214 -13.10127 -12.98633 -12.74468 -12.54398 -12.40089 -12.37686 -12.25058 -11.84083 -11.69311 -11.53328 -11.31896 -10.71411 -10.17238 -10.03712 -9.83260 -9.17204 -8.31504 -6.43097 -0.84130 -0.22721 0.31659 1.20021 1.33770 1.36244 1.42814 1.48808 1.94807 2.12321 2.34624 2.39967 2.70161 3.01492 3.23177 3.67345 3.68608 3.73945 3.94081 4.07747 4.18648 4.30618 4.39652 4.48427 4.56417 4.60725 4.79213 4.84457 4.91615 4.95844 4.98666 4.99347 5.03372 5.07754 5.08547 5.20617 5.30554 5.49713 5.60048 5.69642 5.86272 5.89637 6.00294 6.31704 6.69127 6.98393 7.26056 8.76867 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.008168 B = 0.006502 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3427.208658 B = 4305.652693 C = 7003.608038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.024 4.024 4 C -0.142 4.142 5 C -0.021 4.021 6 C -0.689 4.689 7 S 2.710 3.290 8 O -0.963 6.963 9 O -0.975 6.975 10 N -0.999 5.999 11 C 0.274 3.726 12 C -0.291 4.291 13 C 0.066 3.934 14 N -0.343 5.343 15 C 0.270 3.730 16 C -0.536 4.536 17 H 0.059 0.941 18 C 0.019 3.981 19 N -0.922 5.922 20 Si 0.955 3.045 21 H -0.262 1.262 22 H -0.280 1.280 23 H -0.272 1.272 24 N -0.349 5.349 25 C -0.005 4.005 26 C -0.160 4.160 27 H 0.067 0.933 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.102 0.898 32 H 0.170 0.830 33 H 0.165 0.835 34 H 0.449 0.551 35 H 0.184 0.816 36 H 0.207 0.793 37 H 0.016 0.984 38 H 0.063 0.937 39 H 0.270 0.730 40 H 0.120 0.880 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.484 -1.511 17.529 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.131 4.131 3 C -0.025 4.025 4 C -0.160 4.160 5 C -0.040 4.040 6 C -0.778 4.778 7 S 2.803 3.197 8 O -0.953 6.953 9 O -0.965 6.965 10 N -0.756 5.756 11 C 0.017 3.983 12 C -0.324 4.324 13 C -0.083 4.083 14 N -0.124 5.124 15 C 0.151 3.849 16 C -0.574 4.574 17 H 0.077 0.923 18 C -0.181 4.181 19 N -0.562 5.562 20 Si 0.780 3.220 21 H -0.186 1.186 22 H -0.205 1.205 23 H -0.197 1.197 24 N -0.180 5.180 25 C -0.024 4.024 26 C -0.179 4.179 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.187 0.813 33 H 0.183 0.817 34 H 0.289 0.711 35 H 0.202 0.798 36 H 0.224 0.776 37 H 0.034 0.966 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.138 0.862 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.206 -1.106 16.492 16.838 hybrid contribution 0.566 -0.865 -0.286 1.073 sum -2.640 -1.971 16.207 16.538 Atomic orbital electron populations 1.21731 0.93027 1.03100 1.02216 1.20785 0.97486 0.90627 1.04237 1.20599 0.92125 0.97008 0.92741 1.21487 1.01199 0.94613 0.98701 1.21258 0.91803 0.94819 0.96157 1.30477 1.21400 1.25865 1.00102 1.01235 0.71930 0.74011 0.72549 1.93567 1.80949 1.77027 1.43743 1.93585 1.81105 1.76510 1.45316 1.52339 1.25540 1.73555 1.24154 1.19031 0.92734 0.98236 0.88308 1.21325 0.92985 1.16728 1.01352 1.23198 0.92547 0.98600 0.93912 1.48809 1.02865 1.44937 1.15806 1.19352 0.98765 0.92060 0.74710 1.21430 1.29464 1.11568 0.94921 0.92320 1.25653 0.97439 1.00461 0.94512 1.69999 1.45377 1.41232 0.99573 0.85531 0.78698 0.79022 0.78756 1.18601 1.20529 1.19737 1.77354 1.14657 1.23682 1.02280 1.20952 0.89924 0.94720 0.96851 1.21295 1.02659 0.95014 0.98961 0.91392 0.93794 0.90270 0.91517 0.87944 0.81265 0.81728 0.71068 0.79827 0.77649 0.96606 0.91967 0.92107 0.86211 0.86545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.89 71.98 0.71 -1.81 16 2 C -0.09 -1.95 6.06 29.85 0.18 -1.77 16 3 C -0.02 -0.66 5.13 -19.87 -0.10 -0.77 16 4 C -0.14 -3.27 9.70 22.27 0.22 -3.06 16 5 C -0.02 -0.55 9.52 22.27 0.21 -0.34 16 6 C -0.69 -22.91 5.91 22.27 0.13 -22.77 16 7 S 2.71 89.85 5.50 -56.49 -0.31 89.54 16 8 O -0.96 -30.51 17.28 -128.00 -2.21 -32.73 16 9 O -0.98 -41.39 16.49 -128.00 -2.11 -43.50 16 10 N -1.00 -28.66 5.91 -54.61 -0.32 -28.98 16 11 C 0.27 9.80 7.72 133.39 1.03 10.83 16 12 C -0.29 -8.67 10.83 22.11 0.24 -8.43 16 13 C 0.07 2.20 11.44 83.52 0.96 3.16 16 14 N -0.34 -15.02 3.67 -351.83 -1.29 -16.31 16 15 C 0.27 13.51 6.26 85.63 0.54 14.04 16 16 C -0.54 -29.06 9.24 25.60 0.24 -28.82 16 17 H 0.06 3.28 7.81 -2.91 -0.02 3.25 16 18 C 0.02 1.05 5.46 84.65 0.46 1.51 16 19 N -0.92 -51.79 13.29 21.45 0.28 -51.50 16 20 Si 0.96 42.43 29.54 68.60 2.03 44.46 16 21 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 24 N -0.35 -15.53 9.90 -54.55 -0.54 -16.07 16 25 C 0.00 -0.19 8.71 22.27 0.19 0.01 16 26 C -0.16 -5.66 9.70 22.27 0.22 -5.44 16 27 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.54 8.09 -2.39 -0.02 1.52 16 31 H 0.10 1.58 8.09 -2.39 -0.02 1.56 16 32 H 0.17 2.46 8.06 -2.91 -0.02 2.44 16 33 H 0.17 3.24 7.62 -2.91 -0.02 3.22 16 34 H 0.45 8.65 8.96 -96.74 -0.87 7.79 16 35 H 0.18 3.74 8.06 -2.91 -0.02 3.71 16 36 H 0.21 5.03 8.06 -2.91 -0.02 5.01 16 37 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.06 3.00 8.07 -2.39 -0.02 2.98 16 39 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 40 H 0.12 5.44 6.89 -2.91 -0.02 5.42 16 41 H 0.12 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -74.19 367.09 0.93 -73.25 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: 0.19 Total: 25.51 kcal Atomic # 6 Polarization: -48.89 SS G_CDS: 5.22 Total: -43.67 kcal Atomic # 7 Polarization: -111.00 SS G_CDS: -1.87 Total: -112.86 kcal Atomic # 8 Polarization: -71.91 SS G_CDS: -4.32 Total: -76.23 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 16 Polarization: 89.85 SS G_CDS: -0.31 Total: 89.54 kcal Total: -74.19 0.93 -73.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000117740978.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.392 kcal (2) G-P(sol) polarization free energy of solvation -74.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds