Wall clock time and date at job start Tue Mar 31 2020 18:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.75344 * 124.37300 * 2 1 4 4 C 1.75875 * 92.16034 * 179.97438 * 3 2 1 5 5 N 1.35023 * 130.81727 * 179.97438 * 4 3 2 6 6 C 1.29990 * 121.69707 * 179.71336 * 5 4 3 7 7 N 1.35783 * 121.86792 * 0.58520 * 6 5 4 8 8 C 1.46509 * 119.81092 * 179.72186 * 7 6 5 9 9 C 1.52995 * 109.46875 * 269.72310 * 8 7 6 10 10 C 1.50703 * 109.47287 * 180.02562 * 9 8 7 11 11 O 1.21301 * 119.99484 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00182 * 180.02562 * 10 9 8 13 13 C 1.46496 * 119.99996 * 359.97438 * 12 10 9 14 14 C 1.37104 * 119.99614 * 179.97438 * 12 10 9 15 15 H 1.07996 * 120.00306 * 24.39327 * 14 12 10 16 16 C 1.38947 * 119.99471 * 204.39515 * 14 12 10 17 17 N 1.31415 * 120.00237 * 12.63869 * 16 14 12 18 18 Si 1.86803 * 119.99743 * 192.64046 * 16 14 12 19 19 H 1.48500 * 109.47170 * 59.99898 * 18 16 14 20 20 H 1.48503 * 109.47134 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46972 * 299.99656 * 18 16 14 22 22 C 1.34748 * 120.37166 * 359.44257 * 7 6 5 23 23 O 1.21896 * 120.64301 * 180.27521 * 22 7 6 24 24 C 1.39191 * 109.61934 * 359.97438 * 4 3 2 25 25 C 1.32030 * 124.37615 * 179.97438 * 2 1 3 26 26 C 1.50700 * 122.60048 * 0.03848 * 25 2 1 27 27 H 1.08997 * 109.47311 * 0.02746 * 1 2 3 28 28 H 1.09006 * 109.46725 * 120.02705 * 1 2 3 29 29 H 1.09000 * 109.46847 * 240.02370 * 1 2 3 30 30 H 1.08000 * 119.06286 * 180.28428 * 6 5 4 31 31 H 1.09001 * 109.47085 * 149.72526 * 8 7 6 32 32 H 1.08994 * 109.47250 * 29.72704 * 8 7 6 33 33 H 1.09000 * 109.47566 * 60.00437 * 9 8 7 34 34 H 1.09007 * 109.47220 * 299.99989 * 9 8 7 35 35 H 1.09005 * 109.47113 * 85.86336 * 13 12 10 36 36 H 1.08998 * 109.47023 * 205.86092 * 13 12 10 37 37 H 1.09001 * 109.47464 * 325.86187 * 13 12 10 38 38 H 0.97006 * 120.00013 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.47277 * 269.98332 * 26 25 2 40 40 H 1.09004 * 109.46398 * 29.97784 * 26 25 2 41 41 H 1.09000 * 109.47388 * 149.97996 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4969 1.4472 0.0000 4 6 3.9850 0.5097 0.0008 5 7 5.2764 0.9038 0.0007 6 6 6.2525 0.0453 0.0069 7 7 6.0292 -1.2940 0.0020 8 6 7.1634 -2.2214 0.0032 9 6 7.5589 -2.5452 -1.4388 10 6 8.7251 -3.4997 -1.4377 11 8 9.1941 -3.8829 -0.3867 12 7 9.2475 -3.9268 -2.6044 13 6 8.6814 -3.4635 -3.8736 14 6 10.3089 -4.7947 -2.6032 15 1 10.4818 -5.4352 -1.7511 16 6 11.1620 -4.8501 -3.6985 17 7 11.1101 -3.9146 -4.6200 18 14 12.3830 -6.2546 -3.8612 19 1 11.6495 -7.5448 -3.9121 20 1 13.1705 -6.0839 -5.1086 21 1 13.2992 -6.2518 -2.6925 22 6 4.7705 -1.7749 0.0018 23 8 4.5644 -2.9763 0.0024 24 6 3.6815 -0.8487 0.0016 25 6 2.2525 -1.0897 0.0005 26 6 1.6631 -2.4767 0.0003 27 1 -0.3634 1.0276 -0.0005 28 1 -0.3633 -0.5143 -0.8898 29 1 -0.3633 -0.5135 0.8902 30 1 7.2699 0.4077 0.0112 31 1 6.8810 -3.1401 0.5175 32 1 8.0078 -1.7622 0.5172 33 1 7.8413 -1.6267 -1.9532 34 1 6.7144 -3.0046 -1.9528 35 1 9.1402 -2.5145 -4.1513 36 1 8.8775 -4.2028 -4.6502 37 1 7.6054 -3.3286 -3.7639 38 1 11.7055 -3.9536 -5.3848 39 1 1.5207 -2.8111 1.0279 40 1 0.7020 -2.4628 -0.5138 41 1 2.3401 -3.1591 -0.5135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120370414.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:27 Heat of formation + Delta-G solvation = -11.569408 kcal Electronic energy + Delta-G solvation = -26041.135360 eV Core-core repulsion = 22241.099716 eV Total energy + Delta-G solvation = -3800.035645 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.79405 -38.66940 -37.77429 -37.62801 -35.17231 -34.58214 -31.82975 -31.45428 -30.71508 -29.48064 -26.75273 -26.40579 -25.69131 -24.40384 -23.45404 -22.67573 -19.71099 -18.94785 -18.67922 -17.87734 -17.20220 -16.90636 -16.50144 -16.08579 -15.42491 -14.96474 -14.71138 -14.58211 -14.43504 -14.19418 -14.04504 -13.65298 -13.27754 -13.11993 -13.02231 -12.94221 -12.74878 -12.55135 -12.17983 -12.07895 -11.72580 -11.49728 -11.43385 -11.26832 -11.10164 -10.94217 -10.87893 -10.44174 -10.31922 -10.21941 -10.06042 -9.87237 -9.05900 -8.67161 -8.53254 -8.07268 -7.73843 -6.38561 -3.95157 0.10530 0.94245 1.53145 1.64060 1.91869 2.36806 3.15588 3.21783 3.25713 3.40958 3.78933 3.94904 4.08833 4.20878 4.54040 4.64742 4.74265 4.88450 4.94911 5.04361 5.15526 5.19468 5.21122 5.24006 5.42118 5.53137 5.58727 5.60466 5.76178 5.83126 5.88307 5.97866 6.04811 6.25772 6.30730 6.33680 6.50508 6.77903 7.12116 7.47865 7.51167 7.75004 8.06405 8.40461 9.10791 9.34447 9.88540 10.66287 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.025293 B = 0.002451 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.780752 B =11423.087491 C =11681.724431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.211 4.211 3 S 0.180 5.820 4 C 0.082 3.918 5 N -0.514 5.514 6 C 0.393 3.607 7 N -0.529 5.529 8 C 0.112 3.888 9 C -0.144 4.144 10 C 0.450 3.550 11 O -0.591 6.591 12 N -0.441 5.441 13 C 0.110 3.890 14 C -0.308 4.308 15 H 0.099 0.901 16 C 0.031 3.969 17 N -0.881 5.881 18 Si 0.928 3.072 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.554 3.446 23 O -0.513 6.513 24 C -0.231 4.231 25 C -0.034 4.034 26 C -0.099 4.099 27 H 0.067 0.933 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.213 0.787 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.025 0.975 38 H 0.269 0.731 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.168 11.598 5.885 22.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.327 4.327 3 S 0.445 5.555 4 C -0.151 4.151 5 N -0.237 5.237 6 C 0.103 3.897 7 N -0.248 5.248 8 C -0.009 4.009 9 C -0.185 4.185 10 C 0.238 3.762 11 O -0.477 6.477 12 N -0.159 5.159 13 C -0.034 4.034 14 C -0.436 4.436 15 H 0.116 0.884 16 C -0.172 4.172 17 N -0.520 5.520 18 Si 0.754 3.246 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.197 1.197 22 C 0.348 3.652 23 O -0.389 6.389 24 C -0.249 4.249 25 C -0.045 4.045 26 C -0.158 4.158 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.230 0.770 31 H 0.128 0.872 32 H 0.124 0.876 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.044 0.956 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.375 13.051 6.172 23.368 hybrid contribution 1.009 -2.615 -0.479 2.843 sum -17.366 10.436 5.692 21.045 Atomic orbital electron populations 1.20282 0.87080 1.02788 1.03135 1.23732 1.00255 0.95169 1.13567 1.83936 0.90923 1.06209 1.74457 1.23868 0.96798 0.94369 1.00028 1.67950 0.97002 1.34224 1.24487 1.25076 0.99961 0.78589 0.86033 1.46869 1.09721 1.08510 1.59715 1.21852 0.85846 0.94511 0.98737 1.21833 0.99543 1.00948 0.96211 1.19666 0.86699 0.85137 0.84732 1.90533 1.64945 1.61352 1.30888 1.43546 1.28585 1.39864 1.03929 1.21505 0.93142 1.01201 0.87524 1.19610 1.04028 1.15417 1.04539 0.88374 1.25365 0.97717 0.97766 0.96360 1.69981 1.38656 1.31448 1.11941 0.85976 0.79968 0.80941 0.77699 1.19864 1.20919 1.19700 1.16659 0.81705 0.88716 0.78081 1.90915 1.83542 1.14891 1.49555 1.20639 0.94766 0.92567 1.16882 1.19121 0.89379 0.96775 0.99259 1.20620 1.00633 0.91775 1.02785 0.91385 0.90396 0.90467 0.77039 0.87200 0.87600 0.89792 0.89769 0.92863 0.90592 0.95649 0.92107 0.90895 0.91476 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 9.35 36.01 0.34 -0.16 16 2 C -0.21 -2.14 6.39 -36.23 -0.23 -2.38 16 3 S 0.18 1.86 23.20 -107.50 -2.49 -0.64 16 4 C 0.08 1.08 7.70 -15.79 -0.12 0.96 16 5 N -0.51 -6.44 10.42 -12.60 -0.13 -6.57 16 6 C 0.39 4.33 11.48 -90.12 -1.03 3.30 16 7 N -0.53 -7.19 2.59 -120.42 -0.31 -7.50 16 8 C 0.11 1.67 4.65 -4.04 -0.02 1.66 16 9 C -0.14 -2.48 4.63 -27.88 -0.13 -2.61 16 10 C 0.45 10.45 7.63 -10.98 -0.08 10.36 16 11 O -0.59 -15.48 15.70 5.54 0.09 -15.39 16 12 N -0.44 -11.07 3.01 -122.19 -0.37 -11.44 16 13 C 0.11 2.41 8.44 59.84 0.51 2.92 16 14 C -0.31 -8.45 9.24 -14.93 -0.14 -8.59 16 15 H 0.10 2.81 7.45 -52.49 -0.39 2.42 16 16 C 0.03 0.82 5.04 -17.47 -0.09 0.73 16 17 N -0.88 -23.09 10.83 55.50 0.60 -22.49 16 18 Si 0.93 20.49 29.57 -169.99 -5.03 15.46 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 22 C 0.55 8.80 7.51 -14.44 -0.11 8.69 16 23 O -0.51 -9.51 14.78 5.01 0.07 -9.43 16 24 C -0.23 -3.32 6.06 -105.07 -0.64 -3.96 16 25 C -0.03 -0.43 5.96 -103.90 -0.62 -1.05 16 26 C -0.10 -1.11 9.46 36.01 0.34 -0.76 16 27 H 0.07 0.36 8.13 -51.93 -0.42 -0.06 16 28 H 0.08 0.45 7.85 -51.93 -0.41 0.05 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.21 1.43 8.02 -52.49 -0.42 1.01 16 31 H 0.11 1.90 7.39 -51.93 -0.38 1.52 16 32 H 0.11 1.39 7.96 -51.93 -0.41 0.97 16 33 H 0.08 1.27 8.11 -51.93 -0.42 0.85 16 34 H 0.08 1.48 7.41 -51.93 -0.38 1.09 16 35 H 0.05 1.18 7.83 -51.93 -0.41 0.77 16 36 H 0.08 1.77 6.80 -51.93 -0.35 1.42 16 37 H 0.02 0.47 6.61 -51.93 -0.34 0.13 16 38 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.07 0.57 7.22 -51.93 -0.37 0.20 16 41 H 0.08 1.13 6.62 -51.93 -0.34 0.79 16 LS Contribution 356.94 15.07 5.38 5.38 Total: -1.00 -33.30 356.94 -9.26 -42.57 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -5.05 Total: 0.94 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: -2.03 Total: 9.12 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.21 Total: -48.00 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: 0.16 Total: -24.82 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.49 Total: -0.64 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.30 -9.26 -42.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120370414.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.996 kcal (2) G-P(sol) polarization free energy of solvation -33.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds