Wall clock time and date at job start Tue Mar 31 2020 18:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.75344 * 124.37300 * 2 1 4 4 C 1.75875 * 92.16034 * 179.97438 * 3 2 1 5 5 N 1.35023 * 130.81727 * 179.97438 * 4 3 2 6 6 C 1.29990 * 121.69707 * 179.71336 * 5 4 3 7 7 N 1.35783 * 121.86792 * 0.58520 * 6 5 4 8 8 C 1.46509 * 119.81092 * 179.72186 * 7 6 5 9 9 C 1.52995 * 109.46875 * 269.72310 * 8 7 6 10 10 C 1.50703 * 109.47287 * 180.02562 * 9 8 7 11 11 O 1.21301 * 119.99484 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00182 * 180.02562 * 10 9 8 13 13 C 1.46496 * 119.99996 * 359.97438 * 12 10 9 14 14 C 1.37104 * 119.99614 * 179.97438 * 12 10 9 15 15 H 1.07996 * 120.00306 * 24.39327 * 14 12 10 16 16 C 1.38947 * 119.99471 * 204.39515 * 14 12 10 17 17 N 1.31415 * 120.00237 * 12.63869 * 16 14 12 18 18 Si 1.86803 * 119.99743 * 192.64046 * 16 14 12 19 19 H 1.48500 * 109.47170 * 59.99898 * 18 16 14 20 20 H 1.48503 * 109.47134 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46972 * 299.99656 * 18 16 14 22 22 C 1.34748 * 120.37166 * 359.44257 * 7 6 5 23 23 O 1.21896 * 120.64301 * 180.27521 * 22 7 6 24 24 C 1.39191 * 109.61934 * 359.97438 * 4 3 2 25 25 C 1.32030 * 124.37615 * 179.97438 * 2 1 3 26 26 C 1.50700 * 122.60048 * 0.03848 * 25 2 1 27 27 H 1.08997 * 109.47311 * 0.02746 * 1 2 3 28 28 H 1.09006 * 109.46725 * 120.02705 * 1 2 3 29 29 H 1.09000 * 109.46847 * 240.02370 * 1 2 3 30 30 H 1.08000 * 119.06286 * 180.28428 * 6 5 4 31 31 H 1.09001 * 109.47085 * 149.72526 * 8 7 6 32 32 H 1.08994 * 109.47250 * 29.72704 * 8 7 6 33 33 H 1.09000 * 109.47566 * 60.00437 * 9 8 7 34 34 H 1.09007 * 109.47220 * 299.99989 * 9 8 7 35 35 H 1.09005 * 109.47113 * 85.86336 * 13 12 10 36 36 H 1.08998 * 109.47023 * 205.86092 * 13 12 10 37 37 H 1.09001 * 109.47464 * 325.86187 * 13 12 10 38 38 H 0.97006 * 120.00013 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.47277 * 269.98332 * 26 25 2 40 40 H 1.09004 * 109.46398 * 29.97784 * 26 25 2 41 41 H 1.09000 * 109.47388 * 149.97996 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4969 1.4472 0.0000 4 6 3.9850 0.5097 0.0008 5 7 5.2764 0.9038 0.0007 6 6 6.2525 0.0453 0.0069 7 7 6.0292 -1.2940 0.0020 8 6 7.1634 -2.2214 0.0032 9 6 7.5589 -2.5452 -1.4388 10 6 8.7251 -3.4997 -1.4377 11 8 9.1941 -3.8829 -0.3867 12 7 9.2475 -3.9268 -2.6044 13 6 8.6814 -3.4635 -3.8736 14 6 10.3089 -4.7947 -2.6032 15 1 10.4818 -5.4352 -1.7511 16 6 11.1620 -4.8501 -3.6985 17 7 11.1101 -3.9146 -4.6200 18 14 12.3830 -6.2546 -3.8612 19 1 11.6495 -7.5448 -3.9121 20 1 13.1705 -6.0839 -5.1086 21 1 13.2992 -6.2518 -2.6925 22 6 4.7705 -1.7749 0.0018 23 8 4.5644 -2.9763 0.0024 24 6 3.6815 -0.8487 0.0016 25 6 2.2525 -1.0897 0.0005 26 6 1.6631 -2.4767 0.0003 27 1 -0.3634 1.0276 -0.0005 28 1 -0.3633 -0.5143 -0.8898 29 1 -0.3633 -0.5135 0.8902 30 1 7.2699 0.4077 0.0112 31 1 6.8810 -3.1401 0.5175 32 1 8.0078 -1.7622 0.5172 33 1 7.8413 -1.6267 -1.9532 34 1 6.7144 -3.0046 -1.9528 35 1 9.1402 -2.5145 -4.1513 36 1 8.8775 -4.2028 -4.6502 37 1 7.6054 -3.3286 -3.7639 38 1 11.7055 -3.9536 -5.3848 39 1 1.5207 -2.8111 1.0279 40 1 0.7020 -2.4628 -0.5138 41 1 2.3401 -3.1591 -0.5135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120370414.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:26 Heat of formation + Delta-G solvation = -31.026814 kcal Electronic energy + Delta-G solvation = -26041.979097 eV Core-core repulsion = 22241.099716 eV Total energy + Delta-G solvation = -3800.879381 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.84958 -40.44330 -38.83764 -38.67070 -36.81381 -35.95933 -33.74571 -32.33842 -32.11634 -30.27731 -28.39196 -27.51385 -27.05048 -25.96534 -24.46344 -23.94527 -20.76546 -20.52589 -19.64842 -19.01101 -18.86698 -18.32178 -17.64967 -17.33256 -16.90943 -16.52758 -16.22041 -15.93426 -15.72419 -15.25686 -15.14772 -14.72047 -14.48233 -14.37829 -14.29522 -13.83043 -13.69930 -13.56772 -13.49416 -13.29756 -13.23387 -13.14483 -12.91317 -12.68217 -12.51451 -12.37834 -12.19351 -12.12526 -11.89670 -11.32592 -11.10902 -11.02168 -10.91856 -10.41776 -9.70113 -9.58156 -8.98542 -8.36523 -6.01549 -0.82234 0.07993 0.48606 0.78381 1.02739 1.27077 1.38416 1.41556 1.51491 1.97520 2.26493 2.36237 3.02285 3.06411 3.09458 3.32025 3.67026 3.74841 3.80750 3.82264 3.99405 4.09990 4.30163 4.36431 4.38714 4.52002 4.68151 4.69193 4.71039 4.80035 4.82238 4.85057 4.98635 5.07387 5.14568 5.19591 5.31501 5.40238 5.43273 5.52937 6.07363 6.43665 6.50496 6.62866 7.13098 7.42747 7.97321 8.66561 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.025293 B = 0.002451 C = 0.002396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.780752 B =11423.087491 C =11681.724431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.196 4.196 3 S 0.224 5.776 4 C 0.062 3.938 5 N -0.519 5.519 6 C 0.396 3.604 7 N -0.527 5.527 8 C 0.125 3.875 9 C -0.127 4.127 10 C 0.444 3.556 11 O -0.627 6.627 12 N -0.461 5.461 13 C 0.121 3.879 14 C -0.345 4.345 15 H 0.072 0.928 16 C -0.001 4.001 17 N -0.894 5.894 18 Si 0.988 3.012 19 H -0.270 1.270 20 H -0.270 1.270 21 H -0.274 1.274 22 C 0.543 3.457 23 O -0.555 6.555 24 C -0.256 4.256 25 C -0.067 4.067 26 C -0.093 4.093 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.258 0.742 31 H 0.080 0.920 32 H 0.129 0.871 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.274 0.726 39 H 0.073 0.927 40 H 0.093 0.907 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.340 13.699 5.465 24.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.313 4.313 3 S 0.490 5.510 4 C -0.171 4.171 5 N -0.241 5.241 6 C 0.108 3.892 7 N -0.245 5.245 8 C 0.003 3.997 9 C -0.168 4.168 10 C 0.234 3.766 11 O -0.515 6.515 12 N -0.179 5.179 13 C -0.023 4.023 14 C -0.473 4.473 15 H 0.090 0.910 16 C -0.203 4.203 17 N -0.532 5.532 18 Si 0.811 3.189 19 H -0.195 1.195 20 H -0.194 1.194 21 H -0.200 1.200 22 C 0.339 3.661 23 O -0.434 6.434 24 C -0.274 4.274 25 C -0.077 4.077 26 C -0.152 4.152 27 H 0.104 0.896 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.273 0.727 31 H 0.099 0.901 32 H 0.147 0.853 33 H 0.132 0.868 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.112 0.888 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.567 15.210 5.734 25.437 hybrid contribution 1.279 -3.155 -0.318 3.419 sum -18.288 12.054 5.416 22.563 Atomic orbital electron populations 1.20483 0.84359 1.04409 1.04347 1.24232 1.01970 0.94483 1.10600 1.83777 0.88959 1.05300 1.73002 1.24290 0.98008 0.94712 1.00101 1.68035 0.97047 1.34343 1.24649 1.25985 1.01538 0.77143 0.84579 1.46762 1.08547 1.09335 1.59876 1.21596 0.86839 0.94198 0.97094 1.21690 0.96589 1.00378 0.98140 1.20588 0.87417 0.84960 0.83678 1.90500 1.66353 1.62596 1.32092 1.43816 1.28592 1.40099 1.05442 1.21433 0.94897 1.00117 0.85809 1.19564 1.06043 1.16986 1.04750 0.90985 1.26075 0.98876 0.99746 0.95583 1.70038 1.39029 1.32150 1.12024 0.85078 0.77780 0.78130 0.77866 1.19524 1.19429 1.19973 1.17060 0.82781 0.88557 0.77711 1.90884 1.84268 1.16504 1.51767 1.20801 0.95399 0.92872 1.18333 1.19295 0.88954 0.97898 1.01563 1.20552 1.01033 0.90798 1.02778 0.89582 0.89111 0.89165 0.72687 0.90102 0.85281 0.86777 0.90032 0.93109 0.92493 0.92357 0.91606 0.90845 0.88846 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 9.35 71.24 0.67 -0.11 16 2 C -0.20 -3.56 6.39 24.76 0.16 -3.41 16 3 S 0.22 4.10 23.20 -56.49 -1.31 2.79 16 4 C 0.06 1.54 7.70 84.43 0.65 2.19 16 5 N -0.52 -12.00 10.42 -193.77 -2.02 -14.01 16 6 C 0.40 7.89 11.48 180.17 2.07 9.96 16 7 N -0.53 -13.97 2.59 -653.06 -1.69 -15.66 16 8 C 0.12 3.70 4.65 86.38 0.40 4.10 16 9 C -0.13 -4.28 4.63 29.85 0.14 -4.14 16 10 C 0.44 20.88 7.63 87.66 0.67 21.55 16 11 O -0.63 -33.76 15.70 -3.09 -0.05 -33.81 16 12 N -0.46 -23.49 3.01 -658.89 -1.98 -25.47 16 13 C 0.12 5.26 8.44 127.77 1.08 6.34 16 14 C -0.35 -19.46 9.24 84.04 0.78 -18.68 16 15 H 0.07 4.33 7.45 -2.91 -0.02 4.31 16 16 C 0.00 -0.03 5.04 84.93 0.43 0.40 16 17 N -0.89 -46.64 10.83 21.66 0.23 -46.41 16 18 Si 0.99 42.10 29.57 68.60 2.03 44.13 16 19 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 C 0.54 17.59 7.51 85.43 0.64 18.23 16 23 O -0.55 -21.66 14.78 -4.98 -0.07 -21.74 16 24 C -0.26 -7.34 6.06 -20.16 -0.12 -7.46 16 25 C -0.07 -1.62 5.96 -19.08 -0.11 -1.73 16 26 C -0.09 -2.07 9.46 71.24 0.67 -1.39 16 27 H 0.09 0.58 8.13 -2.39 -0.02 0.56 16 28 H 0.09 0.75 7.85 -2.38 -0.02 0.73 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.26 2.50 8.02 -2.91 -0.02 2.47 16 31 H 0.08 2.91 7.39 -2.39 -0.02 2.89 16 32 H 0.13 3.20 7.96 -2.39 -0.02 3.18 16 33 H 0.11 3.17 8.11 -2.39 -0.02 3.15 16 34 H 0.08 2.83 7.41 -2.38 -0.02 2.82 16 35 H 0.05 2.21 7.83 -2.38 -0.02 2.19 16 36 H 0.06 2.67 6.80 -2.39 -0.02 2.65 16 37 H 0.06 2.11 6.61 -2.39 -0.02 2.09 16 38 H 0.27 13.43 8.31 -92.70 -0.77 12.66 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.09 1.48 7.22 -2.39 -0.02 1.46 16 41 H 0.05 1.53 6.62 -2.39 -0.02 1.51 16 Total: -1.00 -75.48 356.94 4.32 -71.15 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 1.07 Total: 13.19 kcal Atomic # 6 Polarization: 17.72 SS G_CDS: 8.11 Total: 25.84 kcal Atomic # 7 Polarization: -96.10 SS G_CDS: -5.46 Total: -101.56 kcal Atomic # 8 Polarization: -55.43 SS G_CDS: -0.12 Total: -55.55 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 16 Polarization: 4.10 SS G_CDS: -1.31 Total: 2.79 kcal Total: -75.48 4.32 -71.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120370414.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.127 kcal (2) G-P(sol) polarization free energy of solvation -75.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds