Wall clock time and date at job start Tue Mar 31 2020 18:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47216 * 2 1 4 4 N 1.46504 * 109.47015 * 120.00114 * 2 1 3 5 5 C 1.34952 * 126.03579 * 275.25686 * 4 2 1 6 6 C 1.35312 * 107.74413 * 180.14702 * 5 4 2 7 7 S 1.76205 * 126.03526 * 179.87647 * 6 5 4 8 8 O 1.42109 * 106.39840 * 161.40315 * 7 6 5 9 9 O 1.42091 * 106.40319 * 28.48616 * 7 6 5 10 10 N 1.65600 * 107.21585 * 274.94283 * 7 6 5 11 11 C 1.38855 * 120.00336 * 298.66373 * 10 7 6 12 12 C 1.39558 * 119.84322 * 133.75531 * 11 10 7 13 13 C 1.36338 * 120.16114 * 180.26051 * 12 11 10 14 14 C 1.40890 * 119.83635 * 359.49057 * 13 12 11 15 15 C 1.41134 * 120.15565 * 180.25276 * 14 13 12 16 16 H 1.07994 * 120.00174 * 209.30312 * 15 14 13 17 17 C 1.39868 * 119.99821 * 29.30840 * 15 14 13 18 18 N 1.30903 * 120.00032 * 10.68960 * 17 15 14 19 19 Si 1.86801 * 119.99730 * 190.69181 * 17 15 14 20 20 H 1.48502 * 109.47355 * 60.00101 * 19 17 15 21 21 H 1.48504 * 109.47050 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47169 * 299.99651 * 19 17 15 23 23 C 1.40885 * 119.68617 * 0.52911 * 14 13 12 24 24 C 1.36341 * 119.83889 * 359.72535 * 23 14 13 25 25 C 1.39865 * 107.92192 * 359.61457 * 6 5 4 26 26 N 1.30839 * 108.20328 * 0.24106 * 25 6 5 27 27 H 1.08998 * 109.47415 * 300.00185 * 1 2 3 28 28 H 1.09007 * 109.47153 * 60.00329 * 1 2 3 29 29 H 1.09012 * 109.47306 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47415 * 239.99815 * 2 1 3 31 31 H 1.08998 * 109.47080 * 59.99609 * 3 2 1 32 32 H 1.09004 * 109.47125 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47119 * 299.99869 * 3 2 1 34 34 H 1.08007 * 126.12525 * 0.02562 * 5 4 2 35 35 H 0.97000 * 119.99898 * 118.67060 * 10 7 6 36 36 H 1.08005 * 119.92092 * 359.97321 * 12 11 10 37 37 H 1.08004 * 120.08300 * 179.74696 * 13 12 11 38 38 H 0.96997 * 119.99831 * 180.02562 * 18 17 15 39 39 H 1.08006 * 120.07913 * 179.71171 * 23 14 13 40 40 H 1.07998 * 119.91756 * 179.97438 * 24 23 14 41 41 H 1.08006 * 125.89677 * 180.21791 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.1886 -0.1405 2.4167 6 6 2.6566 -1.1051 3.2421 7 16 3.0492 -0.9083 4.9486 8 8 3.0740 -2.2146 5.5078 9 8 2.2105 0.1299 5.4362 10 7 4.6004 -0.3345 5.0317 11 6 5.6481 -1.0890 4.5210 12 6 6.6118 -0.4827 3.7139 13 6 7.6404 -1.2185 3.2046 14 6 7.7350 -2.5920 3.5038 15 6 8.7999 -3.3590 2.9845 16 1 8.6622 -4.4124 2.7904 17 6 10.0336 -2.7548 2.7216 18 7 10.2710 -1.5396 3.1464 19 14 11.3424 -3.6820 1.7642 20 1 10.8189 -4.0290 0.4185 21 1 12.5492 -2.8284 1.6213 22 1 11.7001 -4.9260 2.4921 23 6 6.7583 -3.1975 4.3188 24 6 5.7323 -2.4504 4.8169 25 6 2.7680 -2.2873 2.5031 26 7 2.3856 -2.0400 1.2765 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0278 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.6766 1.9563 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.9891 0.8863 2.6857 35 1 4.7770 0.5288 5.4373 36 1 6.5400 0.5711 3.4884 37 1 8.3831 -0.7488 2.5768 38 1 11.1265 -1.1205 2.9637 39 1 6.8220 -4.2510 4.5483 40 1 4.9826 -2.9133 5.4415 41 1 3.1108 -3.2397 2.8798 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157609881.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:48 Heat of formation + Delta-G solvation = -2.095725 kcal Electronic energy + Delta-G solvation = -26585.197134 eV Core-core repulsion = 22785.572298 eV Total energy + Delta-G solvation = -3799.624835 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.40301 -39.78888 -38.15868 -36.87306 -36.80476 -36.44153 -34.49359 -31.61573 -31.40035 -31.12980 -30.44872 -28.27813 -26.51809 -24.53690 -23.09187 -22.86891 -22.55675 -21.15688 -20.32153 -19.28874 -19.01097 -18.46258 -17.99448 -17.05980 -16.66099 -16.43005 -16.14853 -15.91564 -15.73796 -15.25664 -15.11878 -14.51550 -14.19546 -14.10115 -13.97976 -13.76137 -13.65439 -13.30977 -13.22355 -13.14573 -13.03762 -12.98405 -12.85781 -12.79311 -12.56888 -12.44946 -12.15791 -12.10622 -11.91978 -11.62450 -11.54468 -11.09670 -10.68522 -10.64251 -10.25808 -9.44775 -8.91361 -8.57456 -6.28426 -0.48274 0.55551 0.94712 1.18271 1.23078 1.37548 1.40924 1.51265 1.53481 2.23242 2.25320 2.75592 2.84248 3.24149 3.52556 3.69351 3.73533 3.83793 3.93224 4.02590 4.34347 4.41596 4.45800 4.59251 4.64165 4.67162 4.70180 4.75239 4.83780 5.09893 5.10427 5.16732 5.20222 5.30414 5.32238 5.42793 5.71714 5.79488 5.86118 6.11804 6.16719 6.31990 6.38090 6.46118 6.71503 6.96865 7.05830 8.38249 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012791 B = 0.003715 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.520324 B = 7535.994755 C = 8743.373855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.134 3.866 3 C -0.166 4.166 4 N -0.350 5.350 5 C 0.181 3.819 6 C -0.820 4.820 7 S 2.740 3.260 8 O -0.984 6.984 9 O -0.985 6.985 10 N -1.031 6.031 11 C 0.023 3.977 12 C -0.101 4.101 13 C -0.168 4.168 14 C 0.079 3.921 15 C -0.496 4.496 16 H 0.075 0.925 17 C 0.035 3.965 18 N -0.829 5.829 19 Si 0.981 3.019 20 H -0.262 1.262 21 H -0.268 1.268 22 H -0.262 1.262 23 C -0.219 4.219 24 C -0.118 4.118 25 C 0.127 3.873 26 N -0.321 5.321 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.049 0.951 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.113 0.887 34 H 0.222 0.778 35 H 0.425 0.575 36 H 0.118 0.882 37 H 0.106 0.894 38 H 0.287 0.713 39 H 0.101 0.899 40 H 0.133 0.867 41 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.499 8.784 -6.527 18.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 C -0.224 4.224 4 N -0.128 5.128 5 C 0.026 3.974 6 C -0.920 4.920 7 S 2.831 3.169 8 O -0.974 6.974 9 O -0.976 6.976 10 N -0.784 5.784 11 C -0.073 4.073 12 C -0.123 4.123 13 C -0.189 4.189 14 C 0.076 3.924 15 C -0.526 4.526 16 H 0.093 0.907 17 C -0.179 4.179 18 N -0.456 5.456 19 Si 0.802 3.198 20 H -0.187 1.187 21 H -0.192 1.192 22 H -0.186 1.186 23 C -0.239 4.239 24 C -0.139 4.139 25 C -0.062 4.062 26 N -0.140 5.140 27 H 0.088 0.912 28 H 0.127 0.873 29 H 0.068 0.932 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.131 0.869 34 H 0.238 0.762 35 H 0.262 0.738 36 H 0.136 0.864 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.119 0.881 40 H 0.151 0.849 41 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -15.216 8.231 -7.241 18.754 hybrid contribution 1.316 0.014 0.032 1.317 sum -13.900 8.245 -7.209 17.696 Atomic orbital electron populations 1.22245 0.91605 1.02933 1.04994 1.21896 0.96358 0.94018 0.84317 1.22295 1.01980 0.92135 1.05960 1.49770 1.46741 1.06942 1.09333 1.22812 0.90818 0.99823 0.83945 1.31378 1.31568 1.01633 1.27457 1.00389 0.71108 0.72516 0.72843 1.93483 1.86291 1.41017 1.76641 1.93506 1.65803 1.58251 1.80004 1.52310 1.21427 1.31918 1.72774 1.16700 0.94205 0.90712 1.05680 1.20665 0.95247 0.99125 0.97257 1.20958 0.98860 0.95138 1.03909 1.18016 0.91845 0.93086 0.89422 1.19782 0.96416 0.97137 1.39271 0.90714 1.26675 1.01344 0.95717 0.94208 1.69861 1.24984 1.14684 1.36058 0.85267 0.76619 0.78841 0.79066 1.18661 1.19217 1.18637 1.20869 0.99206 0.99438 1.04381 1.21167 0.98857 0.93651 1.00208 1.23638 0.94269 0.98511 0.89813 1.77347 1.21959 0.94466 1.20215 0.91224 0.87271 0.93170 0.87716 0.90038 0.92405 0.86864 0.76166 0.73763 0.86362 0.87603 0.90245 0.88078 0.84907 0.78969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.52 71.98 0.68 -1.18 16 2 C 0.13 2.10 3.93 44.99 0.18 2.28 16 3 C -0.17 -1.71 8.84 71.98 0.64 -1.07 16 4 N -0.35 -8.63 3.52 -327.49 -1.15 -9.79 16 5 C 0.18 4.37 10.38 83.54 0.87 5.24 16 6 C -0.82 -24.70 6.02 21.99 0.13 -24.57 16 7 S 2.74 86.65 5.77 -56.49 -0.33 86.33 16 8 O -0.98 -36.97 14.93 -128.00 -1.91 -38.88 16 9 O -0.99 -31.57 17.89 -128.00 -2.29 -33.85 16 10 N -1.03 -32.95 5.72 -51.07 -0.29 -33.24 16 11 C 0.02 0.93 6.13 38.67 0.24 1.16 16 12 C -0.10 -4.35 9.90 22.15 0.22 -4.13 16 13 C -0.17 -8.47 8.60 22.48 0.19 -8.27 16 14 C 0.08 4.19 5.55 -21.27 -0.12 4.07 16 15 C -0.50 -26.41 9.04 23.38 0.21 -26.20 16 16 H 0.07 3.85 7.87 -2.91 -0.02 3.83 16 17 C 0.03 1.72 5.25 85.23 0.45 2.16 16 18 N -0.83 -42.39 10.86 21.82 0.24 -42.15 16 19 Si 0.98 37.90 29.57 68.60 2.03 39.93 16 20 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 21 H -0.27 -9.76 7.11 99.48 0.71 -9.06 16 22 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 23 C -0.22 -10.71 9.74 22.48 0.22 -10.50 16 24 C -0.12 -5.22 9.15 22.15 0.20 -5.02 16 25 C 0.13 4.19 11.77 85.23 1.00 5.19 16 26 N -0.32 -10.28 12.58 -57.02 -0.72 -11.00 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 29 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.08 0.65 7.16 -2.39 -0.02 0.63 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.22 3.44 7.27 -2.91 -0.02 3.42 16 35 H 0.42 11.04 8.95 -96.75 -0.87 10.17 16 36 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 37 H 0.11 5.58 6.25 -2.91 -0.02 5.56 16 38 H 0.29 13.32 8.30 -92.71 -0.77 12.55 16 39 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 40 H 0.13 5.67 5.67 -2.91 -0.02 5.65 16 41 H 0.19 6.22 8.06 -2.91 -0.02 6.19 16 Total: -1.00 -69.70 360.46 0.89 -68.81 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: 0.20 Total: 34.68 kcal Atomic # 6 Polarization: -65.94 SS G_CDS: 5.11 Total: -60.83 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -1.93 Total: -96.18 kcal Atomic # 8 Polarization: -68.54 SS G_CDS: -4.20 Total: -72.74 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Atomic # 16 Polarization: 86.65 SS G_CDS: -0.33 Total: 86.33 kcal Total: -69.70 0.89 -68.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157609881.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.716 kcal (2) G-P(sol) polarization free energy of solvation -69.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds