Wall clock time and date at job start Tue Mar 31 2020 19:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47216 * 2 1 4 4 C 1.50699 * 109.46926 * 119.99798 * 2 1 3 5 5 H 1.08004 * 120.00156 * 119.99980 * 4 2 1 6 6 C 1.37875 * 120.00267 * 299.99809 * 4 2 1 7 7 N 1.31511 * 120.00625 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99658 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.47379 * 89.99854 * 8 6 4 10 10 H 1.48503 * 109.46843 * 209.99656 * 8 6 4 11 11 H 1.48501 * 109.47035 * 329.99404 * 8 6 4 12 12 N 1.46503 * 109.47045 * 239.99796 * 2 1 3 13 13 C 1.34775 * 120.00016 * 85.00247 * 12 2 1 14 14 O 1.21618 * 120.00062 * 359.97438 * 13 12 2 15 15 C 1.47168 * 119.99747 * 179.97438 * 13 12 2 16 16 C 1.36622 * 125.15948 * 179.97438 * 15 13 12 17 17 C 1.36800 * 114.74332 * 179.76321 * 16 15 13 18 18 C 1.36615 * 114.74032 * 0.50406 * 17 16 15 19 19 C 1.47171 * 125.15533 * 179.78920 * 18 17 16 20 20 O 1.21624 * 120.00354 * 359.71588 * 19 18 17 21 21 N 1.34777 * 120.00033 * 179.72068 * 19 18 17 22 22 C 1.46500 * 120.00075 * 179.97438 * 21 19 18 23 23 H 1.09002 * 109.47092 * 324.99806 * 22 21 19 24 24 C 1.52997 * 109.47007 * 84.99755 * 22 21 19 25 25 C 1.53000 * 109.47023 * 204.99547 * 22 21 19 26 26 C 1.47204 * 109.46919 * 65.00187 * 25 22 21 27 27 N 9.39719 * 90.56657 * 220.17212 * 2 1 3 28 28 S 1.75825 * 109.68334 * 359.52192 * 18 17 16 29 29 H 1.09001 * 109.47482 * 300.00090 * 1 2 3 30 30 H 1.09002 * 109.47247 * 60.00229 * 1 2 3 31 31 H 1.08999 * 109.47216 * 180.02562 * 1 2 3 32 32 H 0.96998 * 120.00445 * 180.02562 * 7 6 4 33 33 H 0.97005 * 119.99456 * 264.99784 * 12 2 1 34 34 H 1.07994 * 122.62439 * 0.03361 * 16 15 13 35 35 H 1.08000 * 122.62748 * 180.30987 * 17 16 15 36 36 H 0.96997 * 119.99651 * 359.97438 * 21 19 18 37 37 H 1.08998 * 109.47533 * 179.97438 * 24 22 21 38 38 H 1.08996 * 109.47853 * 300.00060 * 24 22 21 39 39 H 1.09002 * 109.47153 * 60.00089 * 24 22 21 40 40 H 1.09002 * 109.47069 * 184.99840 * 25 22 21 41 41 H 1.08991 * 109.47625 * 305.00159 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 2.1379 -0.8589 3.5566 8 14 0.6247 1.2792 2.6540 9 1 -0.8029 0.8729 2.6997 10 1 0.9759 1.9952 3.9067 11 1 0.8471 2.1766 1.4919 12 7 2.0183 -0.6907 -1.1962 13 6 2.1471 -0.0184 -2.3571 14 8 1.8574 1.1616 -2.4119 15 6 2.6382 -0.7121 -3.5586 16 6 2.8083 -0.1357 -4.7855 17 6 3.2825 -0.9784 -5.7532 18 6 3.4986 -2.2619 -5.3379 19 6 4.0001 -3.3543 -6.1871 20 8 4.2514 -3.1473 -7.3589 21 7 4.1808 -4.5841 -5.6662 22 6 4.6794 -5.6717 -6.5116 23 1 4.2845 -5.5574 -7.5211 24 6 6.2081 -5.6250 -6.5537 25 6 4.2259 -7.0145 -5.9354 26 6 2.7586 -7.1081 -6.0057 27 7 1.6229 -7.1801 -6.0617 28 16 3.0940 -2.4087 -3.6331 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.9033 -0.5277 4.4376 33 1 2.2490 -1.6319 -1.1525 34 1 2.5898 0.9047 -4.9754 35 1 3.4684 -0.6552 -6.7668 36 1 3.9807 -4.7491 -4.7315 37 1 6.5792 -6.4344 -7.1824 38 1 6.5313 -4.6683 -6.9642 39 1 6.6031 -5.7392 -5.5442 40 1 4.6698 -7.8259 -6.5123 41 1 4.5454 -7.0905 -4.8962 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171284882.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:39 Heat of formation + Delta-G solvation = -13.124732 kcal Electronic energy + Delta-G solvation = -25082.609551 eV Core-core repulsion = 21282.506462 eV Total energy + Delta-G solvation = -3800.103089 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.33681 -39.38238 -37.80176 -37.03148 -35.80871 -35.12323 -32.59948 -32.42307 -30.68207 -29.35995 -28.69915 -25.91936 -25.23617 -23.01559 -22.05168 -21.30471 -20.13800 -19.53764 -19.07696 -18.10146 -17.29401 -16.74075 -16.29512 -15.98355 -15.46955 -15.40840 -14.98269 -14.70946 -14.54603 -14.30705 -14.09268 -13.91860 -13.55019 -13.17615 -13.10766 -12.93283 -12.76612 -12.61250 -12.45860 -12.27883 -12.25334 -12.14276 -11.89016 -11.53820 -11.39203 -11.28013 -10.89180 -10.47016 -10.26870 -9.87268 -9.70734 -9.49603 -9.34259 -9.02230 -8.85185 -8.83236 -8.34354 -6.28191 -4.31944 -0.02811 1.12690 1.51611 1.96099 2.29683 2.33977 2.59807 2.85594 3.18589 3.31023 3.34454 3.43149 3.45398 3.61719 4.08892 4.25161 4.41174 4.47956 4.66323 4.86252 4.97331 5.00931 5.06435 5.07360 5.16864 5.19155 5.41863 5.72488 5.74567 5.90674 5.91005 6.09043 6.21511 6.27919 6.45176 6.74555 6.92154 7.02209 7.11510 7.14841 7.38358 7.70918 7.96462 8.34699 8.57535 8.71137 9.31342 10.83716 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.015506 B = 0.002654 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.267308 B =10547.370931 C =11481.493149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.237 3.763 3 H 0.053 0.947 4 C -0.539 4.539 5 H 0.081 0.919 6 C 0.081 3.919 7 N -0.890 5.890 8 Si 0.884 3.116 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.261 1.261 12 N -0.691 5.691 13 C 0.571 3.429 14 O -0.533 6.533 15 C -0.199 4.199 16 C -0.088 4.088 17 C -0.057 4.057 18 C -0.255 4.255 19 C 0.600 3.400 20 O -0.523 6.523 21 N -0.728 5.728 22 C 0.148 3.852 23 H 0.101 0.899 24 C -0.165 4.165 25 C -0.035 4.035 26 C 0.194 3.806 27 N -0.421 5.421 28 S 0.188 5.812 29 H 0.050 0.950 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.269 0.731 33 H 0.393 0.607 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.401 0.599 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.129 0.871 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.174 -11.629 -19.340 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.134 3.866 3 H 0.071 0.929 4 C -0.577 4.577 5 H 0.099 0.901 6 C -0.124 4.124 7 N -0.526 5.526 8 Si 0.714 3.286 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.186 1.186 12 N -0.339 5.339 13 C 0.355 3.645 14 O -0.413 6.413 15 C -0.321 4.321 16 C -0.120 4.120 17 C -0.091 4.091 18 C -0.376 4.376 19 C 0.386 3.614 20 O -0.400 6.400 21 N -0.381 5.381 22 C 0.042 3.958 23 H 0.119 0.881 24 C -0.223 4.223 25 C -0.075 4.075 26 C -0.124 4.124 27 N -0.097 5.097 28 S 0.456 5.544 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.227 0.773 34 H 0.178 0.822 35 H 0.175 0.825 36 H 0.236 0.764 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.147 0.853 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.473 -12.003 -18.966 23.360 hybrid contribution -0.216 1.337 -0.122 1.360 sum 6.257 -10.665 -19.088 22.743 Atomic orbital electron populations 1.22471 0.98954 1.01112 0.99597 1.19210 0.90375 0.94764 0.82230 0.92921 1.20986 1.33656 1.14614 0.88419 0.90106 1.24809 0.95402 0.96700 0.95444 1.69853 1.44614 1.40036 0.98093 0.86889 0.80574 0.83543 0.77603 1.20190 1.22014 1.18580 1.46171 1.64483 1.13574 1.09650 1.17128 0.78873 0.86494 0.82040 1.90788 1.51186 1.14852 1.84432 1.25299 1.09942 0.97214 0.99677 1.20585 0.99105 1.02155 0.90124 1.20548 0.96764 0.90496 1.01323 1.24694 1.15446 0.99042 0.98446 1.17007 0.76730 0.81311 0.86355 1.90816 1.50954 1.82433 1.15835 1.45989 1.68380 1.09525 1.14249 1.20960 0.95360 0.83508 0.95971 0.88137 1.22194 0.93224 1.03755 1.03129 1.19696 0.82553 0.99467 1.05783 1.29187 0.95249 0.93942 0.94003 1.81437 1.12633 1.07718 1.07943 1.84003 1.59475 1.07321 1.03622 0.93145 0.94358 0.92644 0.92151 0.77336 0.82194 0.82512 0.76403 0.90748 0.91108 0.91528 0.85297 0.86431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.57 8.96 37.16 0.33 -3.24 16 2 C 0.24 5.53 2.15 -69.08 -0.15 5.38 16 3 H 0.05 1.34 6.64 -51.93 -0.34 1.00 16 4 C -0.54 -14.19 9.31 -34.44 -0.32 -14.51 16 5 H 0.08 2.22 7.98 -52.48 -0.42 1.81 16 6 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 7 N -0.89 -25.72 13.96 55.43 0.77 -24.94 16 8 Si 0.88 21.25 24.37 -169.99 -4.14 17.10 16 9 H -0.28 -6.40 6.87 56.52 0.39 -6.02 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 11 H -0.26 -6.21 6.53 56.52 0.37 -5.85 16 12 N -0.69 -13.56 5.07 -56.09 -0.28 -13.84 16 13 C 0.57 10.78 7.77 -12.64 -0.10 10.68 16 14 O -0.53 -11.75 16.48 5.26 0.09 -11.66 16 15 C -0.20 -2.92 6.46 -36.54 -0.24 -3.16 16 16 C -0.09 -1.13 9.88 -40.69 -0.40 -1.53 16 17 C -0.06 -0.66 9.88 -40.69 -0.40 -1.06 16 18 C -0.25 -2.87 6.46 -36.54 -0.24 -3.11 16 19 C 0.60 6.44 7.77 -12.63 -0.10 6.34 16 20 O -0.52 -6.97 16.48 5.26 0.09 -6.89 16 21 N -0.73 -5.28 4.77 -54.96 -0.26 -5.54 16 22 C 0.15 0.70 2.55 -67.93 -0.17 0.53 16 23 H 0.10 0.64 7.57 -51.93 -0.39 0.24 16 24 C -0.16 -0.59 9.48 37.16 0.35 -0.24 16 25 C -0.03 -0.08 5.25 -29.52 -0.16 -0.23 16 26 C 0.19 1.41 15.16 -20.65 -0.31 1.10 16 27 N -0.42 -4.80 18.56 42.28 0.78 -4.01 16 28 S 0.19 2.11 21.40 -107.50 -2.30 -0.19 16 29 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 33 H 0.39 6.82 7.64 -40.82 -0.31 6.51 16 34 H 0.16 1.95 8.04 -52.49 -0.42 1.53 16 35 H 0.16 1.57 8.04 -52.49 -0.42 1.14 16 36 H 0.40 2.35 7.70 -40.82 -0.31 2.04 16 37 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.13 -0.09 8.14 -51.93 -0.42 -0.51 16 41 H 0.12 0.02 8.14 -51.93 -0.42 -0.40 16 LS Contribution 370.30 15.07 5.58 5.58 Total: -1.00 -35.38 370.30 -6.61 -41.99 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -4.94 Total: 3.34 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -1.99 Total: -0.93 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 1.01 Total: -48.34 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: 0.17 Total: -18.55 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.14 Total: 17.10 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.30 Total: -0.19 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.38 -6.61 -41.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171284882.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.868 kcal (2) G-P(sol) polarization free energy of solvation -35.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds