Wall clock time and date at job start Tue Mar 31 2020 19:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47216 * 2 1 4 4 C 1.50699 * 109.46926 * 119.99798 * 2 1 3 5 5 H 1.08004 * 120.00156 * 119.99980 * 4 2 1 6 6 C 1.37875 * 120.00267 * 299.99809 * 4 2 1 7 7 N 1.31511 * 120.00625 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 119.99658 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.47379 * 89.99854 * 8 6 4 10 10 H 1.48503 * 109.46843 * 209.99656 * 8 6 4 11 11 H 1.48501 * 109.47035 * 329.99404 * 8 6 4 12 12 N 1.46503 * 109.47045 * 239.99796 * 2 1 3 13 13 C 1.34775 * 120.00016 * 85.00247 * 12 2 1 14 14 O 1.21618 * 120.00062 * 359.97438 * 13 12 2 15 15 C 1.47168 * 119.99747 * 179.97438 * 13 12 2 16 16 C 1.36622 * 125.15948 * 179.97438 * 15 13 12 17 17 C 1.36800 * 114.74332 * 179.76321 * 16 15 13 18 18 C 1.36615 * 114.74032 * 0.50406 * 17 16 15 19 19 C 1.47171 * 125.15533 * 179.78920 * 18 17 16 20 20 O 1.21624 * 120.00354 * 359.71588 * 19 18 17 21 21 N 1.34777 * 120.00033 * 179.72068 * 19 18 17 22 22 C 1.46500 * 120.00075 * 179.97438 * 21 19 18 23 23 H 1.09002 * 109.47092 * 324.99806 * 22 21 19 24 24 C 1.52997 * 109.47007 * 84.99755 * 22 21 19 25 25 C 1.53000 * 109.47023 * 204.99547 * 22 21 19 26 26 C 1.47204 * 109.46919 * 65.00187 * 25 22 21 27 27 N 9.39719 * 90.56657 * 220.17212 * 2 1 3 28 28 S 1.75825 * 109.68334 * 359.52192 * 18 17 16 29 29 H 1.09001 * 109.47482 * 300.00090 * 1 2 3 30 30 H 1.09002 * 109.47247 * 60.00229 * 1 2 3 31 31 H 1.08999 * 109.47216 * 180.02562 * 1 2 3 32 32 H 0.96998 * 120.00445 * 180.02562 * 7 6 4 33 33 H 0.97005 * 119.99456 * 264.99784 * 12 2 1 34 34 H 1.07994 * 122.62439 * 0.03361 * 16 15 13 35 35 H 1.08000 * 122.62748 * 180.30987 * 17 16 15 36 36 H 0.96997 * 119.99651 * 359.97438 * 21 19 18 37 37 H 1.08998 * 109.47533 * 179.97438 * 24 22 21 38 38 H 1.08996 * 109.47853 * 300.00060 * 24 22 21 39 39 H 1.09002 * 109.47153 * 60.00089 * 24 22 21 40 40 H 1.09002 * 109.47069 * 184.99840 * 25 22 21 41 41 H 1.08991 * 109.47625 * 305.00159 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4827 7 7 2.1379 -0.8589 3.5566 8 14 0.6247 1.2792 2.6540 9 1 -0.8029 0.8729 2.6997 10 1 0.9759 1.9952 3.9067 11 1 0.8471 2.1766 1.4919 12 7 2.0183 -0.6907 -1.1962 13 6 2.1471 -0.0184 -2.3571 14 8 1.8574 1.1616 -2.4119 15 6 2.6382 -0.7121 -3.5586 16 6 2.8083 -0.1357 -4.7855 17 6 3.2825 -0.9784 -5.7532 18 6 3.4986 -2.2619 -5.3379 19 6 4.0001 -3.3543 -6.1871 20 8 4.2514 -3.1473 -7.3589 21 7 4.1808 -4.5841 -5.6662 22 6 4.6794 -5.6717 -6.5116 23 1 4.2845 -5.5574 -7.5211 24 6 6.2081 -5.6250 -6.5537 25 6 4.2259 -7.0145 -5.9354 26 6 2.7586 -7.1081 -6.0057 27 7 1.6229 -7.1801 -6.0617 28 16 3.0940 -2.4087 -3.6331 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.9033 -0.5277 4.4376 33 1 2.2490 -1.6319 -1.1525 34 1 2.5898 0.9047 -4.9754 35 1 3.4684 -0.6552 -6.7668 36 1 3.9807 -4.7491 -4.7315 37 1 6.5792 -6.4344 -7.1824 38 1 6.5313 -4.6683 -6.9642 39 1 6.6031 -5.7392 -5.5442 40 1 4.6698 -7.8259 -6.5123 41 1 4.5454 -7.0905 -4.8962 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171284882.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:39 Heat of formation + Delta-G solvation = -39.582485 kcal Electronic energy + Delta-G solvation = -25083.756845 eV Core-core repulsion = 21282.506462 eV Total energy + Delta-G solvation = -3801.250383 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.13089 -40.84811 -38.59805 -37.92346 -36.87686 -36.47311 -34.49932 -33.14398 -32.23857 -30.52934 -29.03373 -27.30397 -26.89077 -23.95241 -23.29890 -21.96132 -21.75981 -20.52682 -20.30556 -18.79361 -18.54559 -17.86184 -17.60223 -17.22123 -16.74283 -16.36175 -16.22098 -15.97896 -15.54692 -15.21309 -14.97908 -14.95009 -14.66175 -14.47120 -14.33442 -14.13769 -13.89733 -13.66944 -13.45458 -13.30657 -13.21113 -13.16839 -12.80863 -12.66351 -12.54704 -12.27229 -12.17383 -11.87582 -11.67365 -11.35428 -11.33269 -11.12206 -10.89508 -10.41064 -10.18311 -9.88662 -9.75324 -8.39723 -6.46548 -1.06408 0.13538 0.51774 0.94150 1.27597 1.36055 1.44785 1.75311 1.81545 1.91436 1.94676 2.11265 2.15433 2.25143 2.96416 3.04338 3.55630 3.69846 3.82262 4.03826 4.21631 4.23878 4.35160 4.39764 4.50482 4.63673 4.68774 4.80548 4.81952 4.87588 4.90416 4.96944 5.09167 5.13728 5.24839 5.34141 5.38608 5.47946 5.48823 6.06820 6.23840 6.51491 6.64111 6.64391 6.94344 7.06177 7.23681 8.75119 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.015506 B = 0.002654 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.267308 B =10547.370931 C =11481.493149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.242 3.758 3 H 0.030 0.970 4 C -0.537 4.537 5 H 0.060 0.940 6 C 0.033 3.967 7 N -0.929 5.929 8 Si 0.935 3.065 9 H -0.259 1.259 10 H -0.292 1.292 11 H -0.261 1.261 12 N -0.693 5.693 13 C 0.575 3.425 14 O -0.572 6.572 15 C -0.244 4.244 16 C -0.069 4.069 17 C -0.066 4.066 18 C -0.247 4.247 19 C 0.596 3.404 20 O -0.552 6.552 21 N -0.718 5.718 22 C 0.143 3.857 23 H 0.084 0.916 24 C -0.159 4.159 25 C -0.028 4.028 26 C 0.223 3.777 27 N -0.502 5.502 28 S 0.241 5.759 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.271 0.729 33 H 0.403 0.597 34 H 0.163 0.837 35 H 0.172 0.828 36 H 0.409 0.591 37 H 0.100 0.900 38 H 0.042 0.958 39 H 0.081 0.919 40 H 0.172 0.828 41 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.055 -13.154 -20.504 25.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.138 3.862 3 H 0.048 0.952 4 C -0.575 4.575 5 H 0.078 0.922 6 C -0.167 4.167 7 N -0.568 5.568 8 Si 0.762 3.238 9 H -0.185 1.185 10 H -0.219 1.219 11 H -0.185 1.185 12 N -0.342 5.342 13 C 0.361 3.639 14 O -0.453 6.453 15 C -0.365 4.365 16 C -0.103 4.103 17 C -0.099 4.099 18 C -0.369 4.369 19 C 0.382 3.618 20 O -0.431 6.431 21 N -0.370 5.370 22 C 0.039 3.961 23 H 0.102 0.898 24 C -0.217 4.217 25 C -0.067 4.067 26 C -0.093 4.093 27 N -0.180 5.180 28 S 0.510 5.490 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.239 0.761 34 H 0.181 0.819 35 H 0.189 0.811 36 H 0.245 0.755 37 H 0.119 0.881 38 H 0.061 0.939 39 H 0.100 0.900 40 H 0.189 0.811 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.363 -13.591 -20.125 25.376 hybrid contribution -0.333 1.679 0.127 1.717 sum 7.030 -11.911 -19.999 24.315 Atomic orbital electron populations 1.22379 0.97545 1.01940 0.99785 1.18882 0.91416 0.93414 0.82523 0.95217 1.21190 1.32759 1.13823 0.89702 0.92197 1.25503 0.96695 0.99224 0.95280 1.69953 1.46356 1.41801 0.98681 0.86059 0.79851 0.80457 0.77391 1.18512 1.21886 1.18523 1.45964 1.65017 1.14023 1.09148 1.17507 0.77710 0.86088 0.82584 1.90753 1.52798 1.16574 1.85223 1.24863 1.13536 0.99594 0.98550 1.20700 0.97435 1.02481 0.89651 1.20638 0.97150 0.90409 1.01745 1.25030 1.13708 0.99426 0.98740 1.17004 0.76806 0.82136 0.85882 1.90809 1.52405 1.82994 1.16912 1.46079 1.66966 1.09025 1.14936 1.21170 0.96333 0.83688 0.94949 0.89813 1.22153 0.91777 1.03286 1.04456 1.20094 0.79215 0.98990 1.08433 1.30104 0.96093 0.91585 0.91536 1.81469 1.15327 1.10381 1.10851 1.83731 1.58134 1.04234 1.02922 0.93663 0.93377 0.91507 0.91924 0.76135 0.81947 0.81072 0.75466 0.88110 0.93873 0.90026 0.81104 0.83126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.78 8.96 71.98 0.65 -6.13 16 2 C 0.24 11.28 2.15 44.24 0.10 11.38 16 3 H 0.03 1.54 6.64 -2.39 -0.02 1.52 16 4 C -0.54 -28.52 9.31 25.60 0.24 -28.28 16 5 H 0.06 3.36 7.98 -2.91 -0.02 3.34 16 6 C 0.03 1.84 5.45 84.65 0.46 2.30 16 7 N -0.93 -54.31 13.96 21.45 0.30 -54.01 16 8 Si 0.94 43.60 24.37 68.60 1.67 45.27 16 9 H -0.26 -11.38 6.87 99.48 0.68 -10.69 16 10 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.26 -12.05 6.53 99.48 0.65 -11.40 16 12 N -0.69 -27.13 5.07 -449.63 -2.28 -29.40 16 13 C 0.57 21.68 7.77 86.59 0.67 22.35 16 14 O -0.57 -25.46 16.48 -4.09 -0.07 -25.52 16 15 C -0.24 -6.98 6.46 24.24 0.16 -6.83 16 16 C -0.07 -1.72 9.88 21.55 0.21 -1.51 16 17 C -0.07 -1.42 9.88 21.55 0.21 -1.21 16 18 C -0.25 -5.15 6.46 24.24 0.16 -5.00 16 19 C 0.60 11.83 7.77 86.59 0.67 12.50 16 20 O -0.55 -14.12 16.48 -4.11 -0.07 -14.19 16 21 N -0.72 -8.67 4.77 -446.05 -2.13 -10.80 16 22 C 0.14 0.94 2.55 44.99 0.11 1.05 16 23 H 0.08 0.90 7.57 -2.39 -0.02 0.88 16 24 C -0.16 -0.60 9.48 71.98 0.68 0.08 16 25 C -0.03 -0.01 5.25 28.79 0.15 0.14 16 26 C 0.22 2.77 15.16 89.41 1.35 4.13 16 27 N -0.50 -11.18 18.56 20.05 0.37 -10.81 16 28 S 0.24 5.00 21.40 -56.49 -1.21 3.79 16 29 H 0.04 1.97 3.27 -2.39 -0.01 1.96 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 33 H 0.40 13.84 7.64 -92.70 -0.71 13.13 16 34 H 0.16 3.88 8.04 -2.91 -0.02 3.86 16 35 H 0.17 3.17 8.04 -2.91 -0.02 3.15 16 36 H 0.41 3.58 7.70 -92.71 -0.71 2.87 16 37 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 38 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 40 H 0.17 -1.21 8.14 -2.39 -0.02 -1.22 16 41 H 0.15 -0.78 8.14 -2.39 -0.02 -0.80 16 Total: -1.00 -79.81 370.30 2.02 -77.79 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -0.40 Total: 12.90 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 5.83 Total: 4.98 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -3.73 Total: -105.02 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -0.14 Total: -39.71 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.67 Total: 45.27 kcal Atomic # 16 Polarization: 5.00 SS G_CDS: -1.21 Total: 3.79 kcal Total: -79.81 2.02 -77.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171284882.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.208 kcal (2) G-P(sol) polarization free energy of solvation -79.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds