Wall clock time and date at job start Tue Mar 31 2020 19:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47717 * 2 1 4 4 C 1.50701 * 109.47029 * 240.00428 * 2 1 3 5 5 H 1.08003 * 120.00253 * 240.00323 * 4 2 1 6 6 C 1.37874 * 120.00365 * 59.99920 * 4 2 1 7 7 N 1.31524 * 119.99643 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00469 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46614 * 89.99900 * 8 6 4 10 10 H 1.48498 * 109.47062 * 209.99848 * 8 6 4 11 11 H 1.48500 * 109.46690 * 330.00124 * 8 6 4 12 12 N 1.46502 * 109.47583 * 120.00452 * 2 1 3 13 13 C 1.34776 * 119.99800 * 275.00015 * 12 2 1 14 14 O 1.21629 * 120.00031 * 359.97438 * 13 12 2 15 15 C 1.47168 * 120.00049 * 179.97438 * 13 12 2 16 16 C 1.36605 * 125.16278 * 179.97438 * 15 13 12 17 17 C 1.36802 * 114.74787 * 179.97438 * 16 15 13 18 18 C 1.36611 * 114.74081 * 0.02562 * 17 16 15 19 19 C 1.47173 * 125.16039 * 179.97438 * 18 17 16 20 20 O 1.21620 * 119.99806 * 0.02562 * 19 18 17 21 21 N 1.34774 * 120.00189 * 180.02562 * 19 18 17 22 22 C 1.46494 * 120.00289 * 179.97438 * 21 19 18 23 23 H 1.09006 * 109.46799 * 35.00807 * 22 21 19 24 24 C 1.52994 * 109.47751 * 275.00306 * 22 21 19 25 25 C 1.53002 * 109.47305 * 155.00022 * 22 21 19 26 26 C 1.47206 * 109.47021 * 295.00530 * 25 22 21 27 27 N 9.39855 * 90.60077 * 139.82962 * 2 1 3 28 28 S 1.75837 * 109.67942 * 0.22974 * 18 17 16 29 29 H 1.08999 * 109.47160 * 299.99615 * 1 2 3 30 30 H 1.08997 * 109.47672 * 59.99540 * 1 2 3 31 31 H 1.08995 * 109.47237 * 179.97438 * 1 2 3 32 32 H 0.96995 * 119.99633 * 179.97438 * 7 6 4 33 33 H 0.96994 * 119.99833 * 94.99579 * 12 2 1 34 34 H 1.08005 * 122.63057 * 0.02562 * 16 15 13 35 35 H 1.07996 * 122.62798 * 180.02562 * 17 16 15 36 36 H 0.97004 * 119.99658 * 0.02562 * 21 19 18 37 37 H 1.08996 * 109.47496 * 179.97438 * 24 22 21 38 38 H 1.09002 * 109.46894 * 300.00118 * 24 22 21 39 39 H 1.09001 * 109.46976 * 59.99528 * 24 22 21 40 40 H 1.08996 * 109.47407 * 175.00117 * 25 22 21 41 41 H 1.09000 * 109.46986 * 55.00346 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6531 -1.5885 -1.1316 6 6 1.6992 -0.2393 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 1.3425 -2.1614 -4.4120 10 1 2.4864 -0.1411 -5.1123 11 1 3.6292 -1.7582 -3.7123 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8583 1.1618 2.4117 15 6 2.6373 -0.7123 3.5588 16 6 2.8082 -0.1358 4.7854 17 6 3.2759 -0.9802 5.7548 18 6 3.4966 -2.2624 5.3384 19 6 3.9974 -3.3551 6.1877 20 8 4.2482 -3.1482 7.3596 21 7 4.1780 -4.5849 5.6669 22 6 4.6770 -5.6724 6.5121 23 1 4.2823 -5.5581 7.5217 24 6 6.2057 -5.6257 6.5538 25 6 4.2233 -7.0153 5.9362 26 6 2.7559 -7.1089 6.0070 27 7 1.6285 -7.1813 6.0623 28 16 3.0983 -2.4076 3.6319 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 0.7086 1.1614 -3.4843 33 1 2.2490 -1.6318 1.1524 34 1 2.5903 0.9048 4.9753 35 1 3.4566 -0.6583 6.7697 36 1 3.9782 -4.7498 4.7320 37 1 6.5769 -6.4345 7.1830 38 1 6.6003 -5.7399 5.5441 39 1 6.5289 -4.6690 6.9641 40 1 4.6674 -7.8266 6.5129 41 1 4.5425 -7.0913 4.8968 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171284894.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:45 Heat of formation + Delta-G solvation = -20.861488 kcal Electronic energy + Delta-G solvation = -25032.303607 eV Core-core repulsion = 21231.865027 eV Total energy + Delta-G solvation = -3800.438580 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.31460 -39.20406 -37.82202 -37.00750 -35.86945 -34.90742 -32.59161 -32.40793 -30.25812 -28.87448 -28.60171 -25.77012 -25.31249 -22.96380 -21.92325 -21.28308 -20.01768 -19.50146 -18.95873 -18.07563 -17.22455 -16.62266 -16.23228 -15.73840 -15.42468 -15.23379 -14.84107 -14.71409 -14.47638 -14.23311 -14.09791 -13.91544 -13.55907 -13.04470 -13.00018 -12.77664 -12.59163 -12.50507 -12.39685 -12.26549 -12.16236 -11.78780 -11.54174 -11.24471 -11.17692 -11.02187 -10.84362 -10.46441 -10.38727 -10.31043 -9.69010 -9.45879 -9.15394 -8.94272 -8.78819 -8.64829 -8.09931 -6.19932 -4.30102 0.03746 1.18404 1.57386 2.02515 2.34251 2.38416 2.62327 2.89768 3.19762 3.26639 3.28521 3.44690 3.60787 3.78539 4.09907 4.29456 4.44608 4.48227 4.66812 4.86587 4.97246 5.08399 5.12623 5.16987 5.20483 5.26011 5.42617 5.72633 5.80089 5.92619 5.99104 6.15396 6.73177 6.85413 6.94283 7.03653 7.15318 7.25549 7.41368 7.58655 7.73565 7.79839 8.04544 8.43753 8.63345 8.86407 9.37187 10.86123 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013067 B = 0.002715 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.214297 B =10310.237781 C =11488.442198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.264 3.736 3 H 0.053 0.947 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.068 3.932 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.698 5.698 13 C 0.568 3.432 14 O -0.532 6.532 15 C -0.193 4.193 16 C -0.091 4.091 17 C -0.055 4.055 18 C -0.258 4.258 19 C 0.600 3.400 20 O -0.524 6.524 21 N -0.729 5.729 22 C 0.147 3.853 23 H 0.101 0.899 24 C -0.165 4.165 25 C -0.036 4.036 26 C 0.196 3.804 27 N -0.420 5.420 28 S 0.181 5.819 29 H 0.016 0.984 30 H 0.093 0.907 31 H 0.028 0.972 32 H 0.266 0.734 33 H 0.386 0.614 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.401 0.599 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.129 0.871 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.647 -15.040 16.420 24.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.071 0.929 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.136 4.136 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.345 5.345 13 C 0.350 3.650 14 O -0.411 6.411 15 C -0.316 4.316 16 C -0.123 4.123 17 C -0.089 4.089 18 C -0.379 4.379 19 C 0.387 3.613 20 O -0.401 6.401 21 N -0.382 5.382 22 C 0.042 3.958 23 H 0.119 0.881 24 C -0.223 4.223 25 C -0.076 4.076 26 C -0.122 4.122 27 N -0.097 5.097 28 S 0.448 5.552 29 H 0.035 0.965 30 H 0.112 0.888 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.219 0.781 34 H 0.178 0.822 35 H 0.174 0.826 36 H 0.236 0.764 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.147 0.853 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.864 -15.263 16.101 23.891 hybrid contribution 0.649 0.181 -0.435 0.802 sum 9.513 -15.083 15.666 23.736 Atomic orbital electron populations 1.22099 0.98088 0.99367 1.01186 1.18866 0.91266 0.94085 0.79436 0.92908 1.21173 1.32822 1.13393 0.90184 0.91991 1.24885 0.94712 0.94912 0.99088 1.69898 1.35615 1.22311 1.24069 0.86419 0.79187 0.79290 0.82059 1.20470 1.20982 1.19775 1.46536 1.64307 1.13286 1.10358 1.17136 0.79186 0.86590 0.82054 1.90796 1.51149 1.14824 1.84330 1.25434 1.09249 0.96953 0.99922 1.20591 0.99391 1.02173 0.90188 1.20550 0.96614 0.90487 1.01277 1.24652 1.15849 0.99047 0.98358 1.17012 0.76676 0.81298 0.86353 1.90812 1.50991 1.82448 1.15855 1.45982 1.68453 1.09535 1.14217 1.20952 0.95328 0.83526 0.96001 0.88147 1.22193 0.93268 1.03756 1.03070 1.19698 0.82711 0.99490 1.05737 1.28836 0.95211 0.94048 0.94124 1.81090 1.13171 1.07596 1.07794 1.83929 1.59732 1.07854 1.03650 0.96464 0.88838 0.95300 0.92430 0.78098 0.82189 0.82572 0.76438 0.90770 0.91571 0.91110 0.85348 0.86505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.15 0.34 -3.30 16 2 C 0.26 6.59 2.56 -69.08 -0.18 6.42 16 3 H 0.05 1.51 7.58 -51.93 -0.39 1.11 16 4 C -0.54 -13.88 8.73 -34.44 -0.30 -14.18 16 5 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.30 11.32 55.43 0.63 -23.67 16 8 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 12 N -0.70 -14.38 5.07 -56.09 -0.28 -14.66 16 13 C 0.57 11.36 7.77 -12.64 -0.10 11.26 16 14 O -0.53 -12.53 16.48 5.25 0.09 -12.44 16 15 C -0.19 -2.99 6.46 -36.55 -0.24 -3.23 16 16 C -0.09 -1.25 9.88 -40.69 -0.40 -1.65 16 17 C -0.06 -0.66 9.88 -40.69 -0.40 -1.07 16 18 C -0.26 -3.01 6.46 -36.54 -0.24 -3.25 16 19 C 0.60 6.62 7.77 -12.63 -0.10 6.53 16 20 O -0.52 -7.13 16.48 5.26 0.09 -7.05 16 21 N -0.73 -5.42 4.77 -54.97 -0.26 -5.68 16 22 C 0.15 0.72 2.55 -67.94 -0.17 0.55 16 23 H 0.10 0.65 7.57 -51.93 -0.39 0.26 16 24 C -0.16 -0.60 9.48 37.15 0.35 -0.25 16 25 C -0.04 -0.08 5.25 -29.51 -0.16 -0.24 16 26 C 0.20 1.44 15.13 -20.92 -0.32 1.12 16 27 N -0.42 -4.81 18.50 41.97 0.78 -4.03 16 28 S 0.18 2.11 21.40 -107.50 -2.30 -0.19 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 33 H 0.39 6.92 7.64 -40.82 -0.31 6.61 16 34 H 0.16 2.09 8.04 -52.48 -0.42 1.66 16 35 H 0.16 1.64 8.04 -52.49 -0.42 1.22 16 36 H 0.40 2.41 7.71 -40.82 -0.31 2.10 16 37 H 0.07 0.12 8.14 -51.93 -0.42 -0.30 16 38 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.13 -0.08 8.14 -51.93 -0.42 -0.51 16 41 H 0.12 0.02 8.14 -51.93 -0.42 -0.40 16 LS Contribution 377.04 15.07 5.68 5.68 Total: -1.00 -34.51 377.04 -7.67 -42.18 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.07 Total: 4.39 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -1.99 Total: 0.40 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: 0.86 Total: -48.04 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.17 Total: -19.49 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.30 Total: -0.19 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.51 -7.67 -42.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171284894.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.320 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds