Wall clock time and date at job start Tue Mar 31 2020 19:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47717 * 2 1 4 4 C 1.50701 * 109.47029 * 240.00428 * 2 1 3 5 5 H 1.08003 * 120.00253 * 240.00323 * 4 2 1 6 6 C 1.37874 * 120.00365 * 59.99920 * 4 2 1 7 7 N 1.31524 * 119.99643 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00469 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46614 * 89.99900 * 8 6 4 10 10 H 1.48498 * 109.47062 * 209.99848 * 8 6 4 11 11 H 1.48500 * 109.46690 * 330.00124 * 8 6 4 12 12 N 1.46502 * 109.47583 * 120.00452 * 2 1 3 13 13 C 1.34776 * 119.99800 * 275.00015 * 12 2 1 14 14 O 1.21629 * 120.00031 * 359.97438 * 13 12 2 15 15 C 1.47168 * 120.00049 * 179.97438 * 13 12 2 16 16 C 1.36605 * 125.16278 * 179.97438 * 15 13 12 17 17 C 1.36802 * 114.74787 * 179.97438 * 16 15 13 18 18 C 1.36611 * 114.74081 * 0.02562 * 17 16 15 19 19 C 1.47173 * 125.16039 * 179.97438 * 18 17 16 20 20 O 1.21620 * 119.99806 * 0.02562 * 19 18 17 21 21 N 1.34774 * 120.00189 * 180.02562 * 19 18 17 22 22 C 1.46494 * 120.00289 * 179.97438 * 21 19 18 23 23 H 1.09006 * 109.46799 * 35.00807 * 22 21 19 24 24 C 1.52994 * 109.47751 * 275.00306 * 22 21 19 25 25 C 1.53002 * 109.47305 * 155.00022 * 22 21 19 26 26 C 1.47206 * 109.47021 * 295.00530 * 25 22 21 27 27 N 9.39855 * 90.60077 * 139.82962 * 2 1 3 28 28 S 1.75837 * 109.67942 * 0.22974 * 18 17 16 29 29 H 1.08999 * 109.47160 * 299.99615 * 1 2 3 30 30 H 1.08997 * 109.47672 * 59.99540 * 1 2 3 31 31 H 1.08995 * 109.47237 * 179.97438 * 1 2 3 32 32 H 0.96995 * 119.99633 * 179.97438 * 7 6 4 33 33 H 0.96994 * 119.99833 * 94.99579 * 12 2 1 34 34 H 1.08005 * 122.63057 * 0.02562 * 16 15 13 35 35 H 1.07996 * 122.62798 * 180.02562 * 17 16 15 36 36 H 0.97004 * 119.99658 * 0.02562 * 21 19 18 37 37 H 1.08996 * 109.47496 * 179.97438 * 24 22 21 38 38 H 1.09002 * 109.46894 * 300.00118 * 24 22 21 39 39 H 1.09001 * 109.46976 * 59.99528 * 24 22 21 40 40 H 1.08996 * 109.47407 * 175.00117 * 25 22 21 41 41 H 1.09000 * 109.46986 * 55.00346 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6531 -1.5885 -1.1316 6 6 1.6992 -0.2393 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 1.3425 -2.1614 -4.4120 10 1 2.4864 -0.1411 -5.1123 11 1 3.6292 -1.7582 -3.7123 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8583 1.1618 2.4117 15 6 2.6373 -0.7123 3.5588 16 6 2.8082 -0.1358 4.7854 17 6 3.2759 -0.9802 5.7548 18 6 3.4966 -2.2624 5.3384 19 6 3.9974 -3.3551 6.1877 20 8 4.2482 -3.1482 7.3596 21 7 4.1780 -4.5849 5.6669 22 6 4.6770 -5.6724 6.5121 23 1 4.2823 -5.5581 7.5217 24 6 6.2057 -5.6257 6.5538 25 6 4.2233 -7.0153 5.9362 26 6 2.7559 -7.1089 6.0070 27 7 1.6285 -7.1813 6.0623 28 16 3.0983 -2.4076 3.6319 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 0.7086 1.1614 -3.4843 33 1 2.2490 -1.6318 1.1524 34 1 2.5903 0.9048 4.9753 35 1 3.4566 -0.6583 6.7697 36 1 3.9782 -4.7498 4.7320 37 1 6.5769 -6.4345 7.1830 38 1 6.6003 -5.7399 5.5441 39 1 6.5289 -4.6690 6.9641 40 1 4.6674 -7.8266 6.5129 41 1 4.5425 -7.0913 4.8968 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171284894.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:44 Heat of formation + Delta-G solvation = -45.416866 kcal Electronic energy + Delta-G solvation = -25033.368408 eV Core-core repulsion = 21231.865027 eV Total energy + Delta-G solvation = -3801.503381 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.12356 -40.76366 -38.60925 -37.97460 -36.77069 -36.53710 -34.44280 -33.12034 -31.68564 -30.24556 -29.02478 -27.39540 -26.84361 -23.89973 -23.27683 -21.95606 -21.73067 -20.50568 -20.25931 -18.66628 -18.44932 -17.70299 -17.53551 -17.03927 -16.72665 -16.35031 -16.09005 -16.00209 -15.52402 -15.24589 -14.98925 -14.68517 -14.50013 -14.45606 -14.26189 -13.91747 -13.64516 -13.47957 -13.32280 -13.17331 -13.02343 -12.89193 -12.74730 -12.66406 -12.56813 -12.32824 -12.27510 -12.14907 -11.87580 -11.35939 -11.15780 -11.09834 -10.63317 -10.40291 -10.11194 -9.82058 -9.73604 -8.19561 -6.37850 -1.05384 0.14207 0.51853 0.95425 1.46138 1.46829 1.57502 1.80058 1.85818 1.93813 1.96222 2.14769 2.21234 2.47084 3.06354 3.11446 3.56963 3.76574 3.83682 4.04250 4.22183 4.24261 4.35703 4.68548 4.69583 4.80631 4.82367 4.86820 4.90399 4.92820 5.03282 5.09434 5.13658 5.34794 5.39079 5.48256 5.49585 5.61442 5.81586 6.03846 6.24457 6.65057 6.65438 6.73913 6.94940 7.18669 7.37015 8.87005 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013067 B = 0.002715 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.214297 B =10310.237781 C =11488.442198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.271 3.729 3 H 0.006 0.994 4 C -0.550 4.550 5 H 0.076 0.924 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.974 3.026 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.261 1.261 12 N -0.696 5.696 13 C 0.569 3.431 14 O -0.579 6.579 15 C -0.242 4.242 16 C -0.074 4.074 17 C -0.066 4.066 18 C -0.248 4.248 19 C 0.597 3.403 20 O -0.552 6.552 21 N -0.717 5.717 22 C 0.143 3.857 23 H 0.083 0.917 24 C -0.158 4.158 25 C -0.029 4.029 26 C 0.225 3.775 27 N -0.502 5.502 28 S 0.247 5.753 29 H 0.013 0.987 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.267 0.733 33 H 0.401 0.599 34 H 0.159 0.841 35 H 0.171 0.829 36 H 0.409 0.591 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.041 0.959 40 H 0.171 0.829 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.930 -18.580 16.602 28.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.168 3.832 3 H 0.024 0.976 4 C -0.588 4.588 5 H 0.094 0.906 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.798 3.202 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.185 1.185 12 N -0.344 5.344 13 C 0.355 3.645 14 O -0.461 6.461 15 C -0.364 4.364 16 C -0.107 4.107 17 C -0.099 4.099 18 C -0.370 4.370 19 C 0.382 3.618 20 O -0.431 6.431 21 N -0.370 5.370 22 C 0.038 3.962 23 H 0.101 0.899 24 C -0.217 4.217 25 C -0.068 4.068 26 C -0.092 4.092 27 N -0.179 5.179 28 S 0.516 5.484 29 H 0.032 0.968 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.236 0.764 34 H 0.177 0.823 35 H 0.189 0.811 36 H 0.246 0.754 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.061 0.939 40 H 0.188 0.812 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 11.168 -18.881 16.280 27.318 hybrid contribution 0.024 1.221 -0.364 1.274 sum 11.192 -17.660 15.916 26.277 Atomic orbital electron populations 1.21934 0.98036 0.99689 0.99895 1.18470 0.91304 0.92177 0.81248 0.97648 1.21507 1.32973 1.13769 0.90547 0.90589 1.25811 0.94755 0.95523 1.02356 1.70050 1.36785 1.23846 1.24777 0.85311 0.79110 0.78013 0.77735 1.19630 1.21293 1.18471 1.46231 1.64691 1.13856 1.09633 1.17606 0.77920 0.86148 0.82837 1.90757 1.53049 1.16999 1.85289 1.24919 1.13163 0.99785 0.98545 1.20690 0.97765 1.02415 0.89845 1.20612 0.97191 0.90452 1.01639 1.25025 1.13817 0.99396 0.98773 1.16983 0.76788 0.82131 0.85852 1.90808 1.52400 1.83003 1.16926 1.46062 1.66983 1.08965 1.14941 1.21169 0.96341 0.83718 0.94939 0.89905 1.22153 0.91766 1.03259 1.04476 1.20093 0.79344 0.98930 1.08462 1.29755 0.96080 0.91705 0.91668 1.81123 1.15877 1.10239 1.10687 1.83557 1.58048 1.04066 1.02759 0.96789 0.91040 0.93970 0.92429 0.76394 0.82335 0.81116 0.75428 0.88135 0.89939 0.93929 0.81172 0.83060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.90 9.26 71.98 0.67 -6.23 16 2 C 0.27 13.91 2.56 44.24 0.11 14.03 16 3 H 0.01 0.34 7.58 -2.39 -0.02 0.32 16 4 C -0.55 -28.43 8.73 25.60 0.22 -28.21 16 5 H 0.08 3.62 7.74 -2.91 -0.02 3.60 16 6 C 0.02 0.84 5.30 84.65 0.45 1.29 16 7 N -0.92 -51.67 11.32 21.45 0.24 -51.42 16 8 Si 0.97 40.71 29.54 68.60 2.03 42.74 16 9 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 10 H -0.29 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 12 N -0.70 -29.07 5.07 -449.63 -2.28 -31.35 16 13 C 0.57 23.41 7.77 86.59 0.67 24.08 16 14 O -0.58 -28.68 16.48 -4.12 -0.07 -28.75 16 15 C -0.24 -7.45 6.46 24.23 0.16 -7.29 16 16 C -0.07 -1.99 9.88 21.55 0.21 -1.78 16 17 C -0.07 -1.50 9.88 21.55 0.21 -1.29 16 18 C -0.25 -5.35 6.46 24.24 0.16 -5.20 16 19 C 0.60 12.02 7.77 86.59 0.67 12.69 16 20 O -0.55 -14.34 16.48 -4.09 -0.07 -14.41 16 21 N -0.72 -8.60 4.77 -446.07 -2.13 -10.73 16 22 C 0.14 0.92 2.55 44.99 0.11 1.03 16 23 H 0.08 0.89 7.57 -2.38 -0.02 0.88 16 24 C -0.16 -0.57 9.48 71.98 0.68 0.12 16 25 C -0.03 0.00 5.25 28.79 0.15 0.15 16 26 C 0.22 2.73 15.13 89.50 1.35 4.09 16 27 N -0.50 -11.04 18.50 19.95 0.37 -10.67 16 28 S 0.25 5.26 21.40 -56.49 -1.21 4.05 16 29 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 3.93 6.07 -2.39 -0.01 3.91 16 31 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 33 H 0.40 14.07 7.64 -92.71 -0.71 13.36 16 34 H 0.16 4.23 8.04 -2.91 -0.02 4.21 16 35 H 0.17 3.38 8.04 -2.91 -0.02 3.36 16 36 H 0.41 3.44 7.71 -92.71 -0.71 2.73 16 37 H 0.10 -0.13 8.14 -2.39 -0.02 -0.15 16 38 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 39 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.17 -1.24 8.14 -2.39 -0.02 -1.26 16 41 H 0.15 -0.87 8.14 -2.39 -0.02 -0.89 16 Total: -1.00 -80.11 377.04 2.40 -77.71 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -0.33 Total: 15.35 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 5.84 Total: 7.48 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -3.79 Total: -104.17 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -0.14 Total: -43.16 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Atomic # 16 Polarization: 5.26 SS G_CDS: -1.21 Total: 4.05 kcal Total: -80.11 2.40 -77.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171284894.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.294 kcal (2) G-P(sol) polarization free energy of solvation -80.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds