Wall clock time and date at job start Tue Mar 31 2020 19:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47014 * 2 1 4 4 C 1.50694 * 109.47696 * 120.00010 * 2 1 3 5 5 H 1.08009 * 120.00332 * 119.99835 * 4 2 1 6 6 C 1.37874 * 120.00209 * 300.00248 * 4 2 1 7 7 N 1.31516 * 119.99858 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00379 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46790 * 90.00167 * 8 6 4 10 10 H 1.48497 * 109.47555 * 210.00097 * 8 6 4 11 11 H 1.48498 * 109.47041 * 330.00262 * 8 6 4 12 12 N 1.46504 * 109.47127 * 240.00278 * 2 1 3 13 13 C 1.46489 * 120.00051 * 299.99795 * 12 2 1 14 14 S 1.65606 * 119.99819 * 119.99548 * 12 2 1 15 15 O 1.42105 * 106.40008 * 156.45998 * 14 12 2 16 16 O 1.42098 * 106.40370 * 23.54183 * 14 12 2 17 17 C 1.76193 * 107.21910 * 270.00154 * 14 12 2 18 18 C 1.39918 * 126.03791 * 90.02985 * 17 14 12 19 19 N 1.30869 * 108.24824 * 179.97438 * 18 17 14 20 20 N 1.40090 * 108.21859 * 359.97438 * 19 18 17 21 21 C 1.40184 * 126.05610 * 180.02562 * 20 19 18 22 22 C 1.38833 * 120.06689 * 179.70162 * 21 20 19 23 23 C 1.38126 * 119.93117 * 179.74397 * 22 21 20 24 24 C 1.38272 * 120.06550 * 0.52704 * 23 22 21 25 25 C 1.38280 * 120.13664 * 359.74441 * 24 23 22 26 26 C 1.38116 * 120.06533 * 359.97438 * 25 24 23 27 27 C 1.35226 * 107.89088 * 359.77246 * 20 19 18 28 28 H 1.09001 * 109.47014 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47209 * 299.99422 * 1 2 3 30 30 H 1.08997 * 109.47853 * 59.99970 * 1 2 3 31 31 H 0.97005 * 120.00258 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47302 * 269.99851 * 13 12 2 33 33 H 1.09005 * 109.47350 * 29.99843 * 13 12 2 34 34 H 1.08996 * 109.47412 * 149.99906 * 13 12 2 35 35 H 1.08004 * 125.87310 * 359.93463 * 18 17 14 36 36 H 1.07999 * 120.03725 * 359.97438 * 22 21 20 37 37 H 1.07995 * 119.96614 * 180.28961 * 23 22 21 38 38 H 1.08002 * 119.93296 * 179.76786 * 24 23 22 39 39 H 1.07999 * 119.97120 * 180.02562 * 25 24 23 40 40 H 1.08004 * 120.03630 * 180.02562 * 26 25 24 41 41 H 1.08003 * 126.14370 * 180.21961 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3216 -1.1203 4.0079 9 1 3.6299 -0.5457 4.4122 10 1 1.3435 -0.9494 5.1120 11 1 2.4862 -2.5662 3.7118 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0930 -1.4281 14 16 2.9703 0.1144 -2.2863 15 8 3.7118 -0.8787 -2.9816 16 8 3.5793 1.1831 -1.5749 17 6 1.8959 0.8537 -3.4710 18 6 1.3345 2.1326 -3.3880 19 7 0.5961 2.3258 -4.4511 20 7 0.6641 1.1747 -5.2467 21 6 0.0133 0.9796 -6.4729 22 6 0.1737 -0.2142 -7.1632 23 6 -0.4731 -0.4055 -8.3686 24 6 -1.2709 0.5947 -8.8931 25 6 -1.4280 1.7870 -8.2106 26 6 -0.7885 1.9820 -7.0021 27 6 1.4733 0.2873 -4.6251 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3635 0.5138 -0.8899 31 1 0.7090 1.1613 3.4845 32 1 2.4157 -2.7376 -0.9719 33 1 0.6904 -2.3002 -0.9847 34 1 1.6238 -2.2851 -2.5002 35 1 1.4842 2.8386 -2.5845 36 1 0.8004 -0.9939 -6.7564 37 1 -0.3525 -1.3358 -8.9038 38 1 -1.7726 0.4442 -9.8376 39 1 -2.0521 2.5663 -8.6226 40 1 -0.9119 2.9133 -6.4692 41 1 1.7332 -0.6977 -4.9838 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171709345.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:44 Heat of formation + Delta-G solvation = 43.878099 kcal Electronic energy + Delta-G solvation = -26560.066835 eV Core-core repulsion = 22762.435575 eV Total energy + Delta-G solvation = -3797.631260 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.72860 -39.27948 -36.62305 -36.15244 -35.18486 -33.83640 -32.56737 -31.64685 -30.45474 -29.30211 -29.07867 -25.58677 -25.12694 -23.98704 -23.47568 -21.35374 -21.05320 -20.59137 -19.03066 -17.93154 -16.90768 -16.76991 -16.39365 -15.89549 -15.60382 -15.50417 -15.19425 -14.71620 -14.50330 -14.19595 -13.93140 -13.54344 -13.21148 -13.13584 -13.01489 -12.78940 -12.07446 -12.02946 -11.85561 -11.71361 -11.49904 -11.34092 -11.29820 -11.20169 -10.95137 -10.80843 -10.71472 -10.55794 -10.39705 -10.24460 -9.98563 -9.55897 -9.45068 -9.23820 -8.51627 -8.43165 -7.95141 -6.05362 -4.11773 0.42639 0.90136 1.04687 1.80466 2.12633 2.31645 3.31262 3.37732 3.38135 3.40376 3.78197 4.10119 4.33928 4.39928 4.44569 4.48601 4.57044 4.72201 4.91420 4.93418 5.04820 5.22984 5.26225 5.36305 5.56445 5.58929 5.59314 5.89801 5.91098 6.05407 6.14178 6.31361 6.34146 6.35814 6.63148 6.78992 6.81799 6.84133 7.03898 7.30662 7.45447 7.65052 7.80493 8.05553 8.29083 8.90435 9.53904 11.00376 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.021970 B = 0.003048 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.144525 B = 9184.969521 C = 9417.416895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.267 3.733 3 H 0.062 0.938 4 C -0.519 4.519 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.980 5.980 13 C 0.109 3.891 14 S 2.712 3.288 15 O -0.979 6.979 16 O -0.950 6.950 17 C -0.795 4.795 18 C 0.149 3.851 19 N -0.291 5.291 20 N -0.318 5.318 21 C 0.154 3.846 22 C -0.141 4.141 23 C -0.092 4.092 24 C -0.129 4.129 25 C -0.097 4.097 26 C -0.115 4.115 27 C 0.170 3.830 28 H 0.033 0.967 29 H 0.094 0.906 30 H 0.010 0.990 31 H 0.263 0.737 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.206 0.794 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.133 0.867 40 H 0.140 0.860 41 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.291 -1.597 -20.760 21.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.165 3.835 3 H 0.080 0.920 4 C -0.558 4.558 5 H 0.082 0.918 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.821 5.821 13 C -0.037 4.037 14 S 2.799 3.201 15 O -0.969 6.969 16 O -0.940 6.940 17 C -0.889 4.889 18 C -0.041 4.041 19 N -0.108 5.108 20 N -0.090 5.090 21 C 0.062 3.938 22 C -0.161 4.161 23 C -0.111 4.111 24 C -0.147 4.147 25 C -0.115 4.115 26 C -0.135 4.135 27 C 0.022 3.978 28 H 0.052 0.948 29 H 0.112 0.888 30 H 0.029 0.971 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.223 0.777 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.158 0.842 41 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -5.325 -0.583 -21.346 22.008 hybrid contribution 0.063 -0.841 1.057 1.352 sum -5.262 -1.424 -20.290 21.010 Atomic orbital electron populations 1.22133 0.98383 0.99728 1.00647 1.18781 0.91222 0.93231 0.80291 0.91990 1.21324 1.31568 1.13028 0.89910 0.91838 1.24901 0.94962 0.95027 0.98974 1.69858 1.36525 1.22736 1.23777 0.86499 0.78667 0.79959 0.82292 1.20521 1.21249 1.19889 1.57437 1.70487 1.19448 1.34682 1.21167 1.01892 0.81941 0.98744 1.01396 0.73400 0.73133 0.72219 1.93495 1.68565 1.59478 1.75359 1.93565 1.73217 1.56111 1.71146 1.32390 1.30333 1.08584 1.17632 1.23772 0.90537 0.94262 0.95541 1.77468 1.24103 1.04171 1.05079 1.46389 1.34607 1.12262 1.15722 1.17684 0.96337 0.95982 0.83810 1.20925 1.02775 0.95916 0.96512 1.20994 0.96030 0.99507 0.94567 1.21269 0.99328 0.93688 1.00464 1.21105 0.98666 0.97747 0.94004 1.20976 0.96931 0.99048 0.96549 1.22467 0.88691 0.95799 0.90862 0.94787 0.88790 0.97132 0.92701 0.92915 0.90924 0.93412 0.77747 0.84906 0.84774 0.85313 0.84951 0.84247 0.79120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 8.95 37.15 0.33 -3.03 16 2 C 0.27 6.40 2.62 -69.09 -0.18 6.22 16 3 H 0.06 1.62 6.91 -51.93 -0.36 1.26 16 4 C -0.52 -13.71 8.37 -34.44 -0.29 -14.00 16 5 H 0.06 1.67 7.65 -52.48 -0.40 1.26 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.49 11.32 55.43 0.63 -23.86 16 8 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 N -0.98 -19.83 3.06 -115.87 -0.35 -20.19 16 13 C 0.11 1.86 9.53 59.84 0.57 2.43 16 14 S 2.71 52.07 5.78 -107.50 -0.62 51.45 16 15 O -0.98 -19.19 16.92 -57.17 -0.97 -20.15 16 16 O -0.95 -21.38 16.43 -57.17 -0.94 -22.32 16 17 C -0.80 -13.04 6.17 -39.99 -0.25 -13.28 16 18 C 0.15 2.41 11.81 -17.33 -0.20 2.21 16 19 N -0.29 -4.64 11.87 30.64 0.36 -4.27 16 20 N -0.32 -4.55 3.80 -10.70 -0.04 -4.59 16 21 C 0.15 1.83 6.69 -83.59 -0.56 1.27 16 22 C -0.14 -1.30 9.46 -39.40 -0.37 -1.68 16 23 C -0.09 -0.67 10.04 -39.61 -0.40 -1.07 16 24 C -0.13 -0.89 10.04 -39.55 -0.40 -1.28 16 25 C -0.10 -0.76 10.04 -39.61 -0.40 -1.16 16 26 C -0.12 -1.23 9.66 -39.40 -0.38 -1.61 16 27 C 0.17 2.39 10.54 -17.09 -0.18 2.21 16 28 H 0.03 0.72 6.66 -51.93 -0.35 0.37 16 29 H 0.09 2.34 6.07 -51.93 -0.32 2.03 16 30 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.21 6.43 -51.93 -0.33 0.88 16 34 H 0.05 0.66 7.79 -51.93 -0.40 0.25 16 35 H 0.21 2.99 8.06 -52.48 -0.42 2.56 16 36 H 0.13 1.00 6.74 -52.49 -0.35 0.65 16 37 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 38 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 39 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.14 1.54 7.70 -52.48 -0.40 1.14 16 41 H 0.19 1.99 7.04 -52.48 -0.37 1.62 16 LS Contribution 359.09 15.07 5.41 5.41 Total: -1.00 -33.21 359.09 -9.30 -42.51 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -4.96 Total: 1.28 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -2.80 Total: -21.17 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: 0.60 Total: -52.91 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -1.91 Total: -42.47 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 52.07 SS G_CDS: -0.62 Total: 51.45 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.21 -9.30 -42.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171709345.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.386 kcal (2) G-P(sol) polarization free energy of solvation -33.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds