Wall clock time and date at job start Tue Mar 31 2020 19:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47014 * 2 1 4 4 C 1.50694 * 109.47696 * 120.00010 * 2 1 3 5 5 H 1.08009 * 120.00332 * 119.99835 * 4 2 1 6 6 C 1.37874 * 120.00209 * 300.00248 * 4 2 1 7 7 N 1.31516 * 119.99858 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00379 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46790 * 90.00167 * 8 6 4 10 10 H 1.48497 * 109.47555 * 210.00097 * 8 6 4 11 11 H 1.48498 * 109.47041 * 330.00262 * 8 6 4 12 12 N 1.46504 * 109.47127 * 240.00278 * 2 1 3 13 13 C 1.46489 * 120.00051 * 299.99795 * 12 2 1 14 14 S 1.65606 * 119.99819 * 119.99548 * 12 2 1 15 15 O 1.42105 * 106.40008 * 156.45998 * 14 12 2 16 16 O 1.42098 * 106.40370 * 23.54183 * 14 12 2 17 17 C 1.76193 * 107.21910 * 270.00154 * 14 12 2 18 18 C 1.39918 * 126.03791 * 90.02985 * 17 14 12 19 19 N 1.30869 * 108.24824 * 179.97438 * 18 17 14 20 20 N 1.40090 * 108.21859 * 359.97438 * 19 18 17 21 21 C 1.40184 * 126.05610 * 180.02562 * 20 19 18 22 22 C 1.38833 * 120.06689 * 179.70162 * 21 20 19 23 23 C 1.38126 * 119.93117 * 179.74397 * 22 21 20 24 24 C 1.38272 * 120.06550 * 0.52704 * 23 22 21 25 25 C 1.38280 * 120.13664 * 359.74441 * 24 23 22 26 26 C 1.38116 * 120.06533 * 359.97438 * 25 24 23 27 27 C 1.35226 * 107.89088 * 359.77246 * 20 19 18 28 28 H 1.09001 * 109.47014 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47209 * 299.99422 * 1 2 3 30 30 H 1.08997 * 109.47853 * 59.99970 * 1 2 3 31 31 H 0.97005 * 120.00258 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47302 * 269.99851 * 13 12 2 33 33 H 1.09005 * 109.47350 * 29.99843 * 13 12 2 34 34 H 1.08996 * 109.47412 * 149.99906 * 13 12 2 35 35 H 1.08004 * 125.87310 * 359.93463 * 18 17 14 36 36 H 1.07999 * 120.03725 * 359.97438 * 22 21 20 37 37 H 1.07995 * 119.96614 * 180.28961 * 23 22 21 38 38 H 1.08002 * 119.93296 * 179.76786 * 24 23 22 39 39 H 1.07999 * 119.97120 * 180.02562 * 25 24 23 40 40 H 1.08004 * 120.03630 * 180.02562 * 26 25 24 41 41 H 1.08003 * 126.14370 * 180.21961 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3216 -1.1203 4.0079 9 1 3.6299 -0.5457 4.4122 10 1 1.3435 -0.9494 5.1120 11 1 2.4862 -2.5662 3.7118 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0930 -1.4281 14 16 2.9703 0.1144 -2.2863 15 8 3.7118 -0.8787 -2.9816 16 8 3.5793 1.1831 -1.5749 17 6 1.8959 0.8537 -3.4710 18 6 1.3345 2.1326 -3.3880 19 7 0.5961 2.3258 -4.4511 20 7 0.6641 1.1747 -5.2467 21 6 0.0133 0.9796 -6.4729 22 6 0.1737 -0.2142 -7.1632 23 6 -0.4731 -0.4055 -8.3686 24 6 -1.2709 0.5947 -8.8931 25 6 -1.4280 1.7870 -8.2106 26 6 -0.7885 1.9820 -7.0021 27 6 1.4733 0.2873 -4.6251 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3635 0.5138 -0.8899 31 1 0.7090 1.1613 3.4845 32 1 2.4157 -2.7376 -0.9719 33 1 0.6904 -2.3002 -0.9847 34 1 1.6238 -2.2851 -2.5002 35 1 1.4842 2.8386 -2.5845 36 1 0.8004 -0.9939 -6.7564 37 1 -0.3525 -1.3358 -8.9038 38 1 -1.7726 0.4442 -9.8376 39 1 -2.0521 2.5663 -8.6226 40 1 -0.9119 2.9133 -6.4692 41 1 1.7332 -0.6977 -4.9838 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171709345.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:43 Heat of formation + Delta-G solvation = 22.336615 kcal Electronic energy + Delta-G solvation = -26561.000944 eV Core-core repulsion = 22762.435575 eV Total energy + Delta-G solvation = -3798.565369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.81879 -39.98899 -38.23211 -37.84913 -36.79787 -34.75287 -34.48752 -32.41562 -31.47987 -30.87981 -30.16988 -27.25786 -26.95239 -24.90461 -24.29474 -22.66839 -22.13752 -21.96759 -20.11382 -19.37495 -18.51296 -18.25523 -17.62268 -17.05557 -16.89439 -16.60083 -16.46096 -16.24021 -15.54181 -15.22108 -15.00030 -14.75354 -14.62022 -14.53638 -14.13224 -13.90460 -13.68014 -13.30324 -13.19932 -13.11693 -12.95979 -12.93554 -12.76870 -12.67073 -12.55572 -12.22959 -12.15818 -12.09200 -11.88717 -11.73494 -11.62181 -11.11501 -10.73973 -10.46506 -10.08220 -9.62609 -9.35946 -8.07722 -6.20908 -0.50482 -0.36358 0.27562 0.84374 1.07940 1.13782 1.45695 1.47901 1.56597 2.28510 2.48237 2.72073 2.89511 3.07680 3.20988 3.45024 3.56028 3.81946 3.86647 4.09042 4.15782 4.17917 4.31549 4.37156 4.47398 4.58260 4.72930 4.89495 4.97005 5.00091 5.03041 5.06346 5.17105 5.24398 5.25061 5.32507 5.46013 5.63473 5.65275 5.76926 5.91811 5.98401 6.15521 6.16983 6.33677 6.86865 7.47829 8.96612 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.021970 B = 0.003048 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.144525 B = 9184.969521 C = 9417.416895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.272 3.728 3 H 0.031 0.969 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.955 3.045 9 H -0.282 1.282 10 H -0.281 1.281 11 H -0.265 1.265 12 N -0.988 5.988 13 C 0.099 3.901 14 S 2.730 3.270 15 O -0.984 6.984 16 O -0.993 6.993 17 C -0.811 4.811 18 C 0.133 3.867 19 N -0.308 5.308 20 N -0.311 5.311 21 C 0.110 3.890 22 C -0.142 4.142 23 C -0.090 4.090 24 C -0.117 4.117 25 C -0.099 4.099 26 C -0.133 4.133 27 C 0.181 3.819 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.026 0.974 31 H 0.264 0.736 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.207 0.793 36 H 0.150 0.850 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.155 0.845 40 H 0.123 0.877 41 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.278 -3.704 -23.617 24.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.168 3.832 3 H 0.049 0.951 4 C -0.575 4.575 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.554 5.554 8 Si 0.781 3.219 9 H -0.208 1.208 10 H -0.207 1.207 11 H -0.190 1.190 12 N -0.828 5.828 13 C -0.046 4.046 14 S 2.820 3.180 15 O -0.974 6.974 16 O -0.984 6.984 17 C -0.909 4.909 18 C -0.056 4.056 19 N -0.125 5.125 20 N -0.082 5.082 21 C 0.019 3.981 22 C -0.162 4.162 23 C -0.109 4.109 24 C -0.135 4.135 25 C -0.118 4.118 26 C -0.153 4.153 27 C 0.031 3.969 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.223 0.777 36 H 0.168 0.832 37 H 0.185 0.815 38 H 0.180 0.820 39 H 0.172 0.828 40 H 0.141 0.859 41 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -6.307 -2.715 -24.205 25.160 hybrid contribution 0.279 -0.185 1.662 1.695 sum -6.028 -2.900 -22.543 23.515 Atomic orbital electron populations 1.21924 0.97361 1.00147 1.00121 1.18428 0.91865 0.91790 0.81092 0.95097 1.21655 1.31501 1.13060 0.91240 0.92169 1.25634 0.95244 0.95733 1.01647 1.69981 1.37377 1.23790 1.24287 0.85608 0.77901 0.79276 0.79164 1.20807 1.20672 1.18966 1.57305 1.70484 1.20801 1.34187 1.21420 1.01832 0.80068 1.01304 1.00486 0.73198 0.72302 0.72025 1.93473 1.69086 1.59639 1.75197 1.93507 1.74776 1.57462 1.72628 1.31800 1.31806 1.09029 1.18294 1.23897 0.91041 0.94656 0.96028 1.77413 1.24291 1.05597 1.05227 1.46554 1.34013 1.11473 1.16151 1.18131 0.98327 0.97899 0.83696 1.21261 1.02861 0.95131 0.96943 1.21450 0.94883 1.00804 0.93715 1.21740 0.98048 0.92635 1.01112 1.21415 0.98310 0.99081 0.92947 1.21065 0.97852 0.98536 0.97810 1.22975 0.87409 0.96818 0.89728 0.93762 0.91388 0.95493 0.92704 0.93315 0.90618 0.89664 0.77660 0.83220 0.81522 0.82013 0.82760 0.85872 0.75438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.21 8.95 71.98 0.64 -5.56 16 2 C 0.27 13.35 2.62 44.24 0.12 13.47 16 3 H 0.03 1.71 6.91 -2.39 -0.02 1.69 16 4 C -0.53 -28.76 8.37 25.60 0.21 -28.54 16 5 H 0.06 3.19 7.65 -2.91 -0.02 3.17 16 6 C 0.02 0.93 5.30 84.65 0.45 1.38 16 7 N -0.92 -51.52 11.32 21.45 0.24 -51.27 16 8 Si 0.95 43.18 29.54 68.60 2.03 45.21 16 9 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 12 N -0.99 -40.08 3.06 -520.49 -1.59 -41.67 16 13 C 0.10 3.26 9.53 127.77 1.22 4.47 16 14 S 2.73 105.76 5.78 -56.49 -0.33 105.43 16 15 O -0.98 -37.68 16.92 -128.00 -2.17 -39.84 16 16 O -0.99 -46.65 16.43 -128.00 -2.10 -48.76 16 17 C -0.81 -26.53 6.17 22.00 0.14 -26.40 16 18 C 0.13 4.47 11.81 85.24 1.01 5.48 16 19 N -0.31 -9.98 11.87 -56.97 -0.68 -10.66 16 20 N -0.31 -8.64 3.80 -187.75 -0.71 -9.35 16 21 C 0.11 2.45 6.69 38.09 0.25 2.71 16 22 C -0.14 -2.18 9.46 22.39 0.21 -1.97 16 23 C -0.09 -0.91 10.04 22.25 0.22 -0.69 16 24 C -0.12 -1.11 10.04 22.29 0.22 -0.89 16 25 C -0.10 -1.31 10.04 22.25 0.22 -1.09 16 26 C -0.13 -2.71 9.66 22.39 0.22 -2.50 16 27 C 0.18 4.80 10.54 83.50 0.88 5.68 16 28 H 0.04 1.87 6.66 -2.39 -0.02 1.85 16 29 H 0.07 3.47 6.07 -2.38 -0.01 3.46 16 30 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.26 14.13 8.31 -92.70 -0.77 13.36 16 32 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.08 2.43 6.43 -2.38 -0.02 2.41 16 34 H 0.08 2.13 7.79 -2.39 -0.02 2.11 16 35 H 0.21 6.51 8.06 -2.91 -0.02 6.48 16 36 H 0.15 1.67 6.74 -2.91 -0.02 1.65 16 37 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 38 H 0.16 0.50 8.06 -2.91 -0.02 0.48 16 39 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 40 H 0.12 2.81 7.70 -2.91 -0.02 2.79 16 41 H 0.23 4.01 7.04 -2.91 -0.02 3.99 16 Total: -1.00 -73.75 359.09 1.76 -71.99 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 1.05 Total: 13.37 kcal Atomic # 6 Polarization: -40.46 SS G_CDS: 6.02 Total: -34.44 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -2.74 Total: -112.96 kcal Atomic # 8 Polarization: -84.33 SS G_CDS: -4.27 Total: -88.60 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 105.76 SS G_CDS: -0.33 Total: 105.43 kcal Total: -73.75 1.76 -71.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171709345.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.327 kcal (2) G-P(sol) polarization free energy of solvation -73.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds