Wall clock time and date at job start Tue Mar 31 2020 18:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47109 * 2 1 4 4 N 1.46492 * 109.47030 * 184.23331 * 3 2 1 5 5 C 1.36959 * 120.00166 * 271.02388 * 4 3 2 6 6 H 1.08000 * 120.00102 * 174.34962 * 5 4 3 7 7 C 1.38961 * 119.99539 * 354.34699 * 5 4 3 8 8 N 1.31424 * 120.00486 * 33.43524 * 7 5 4 9 9 Si 1.86807 * 119.99899 * 213.43490 * 7 5 4 10 10 H 1.48505 * 109.46852 * 94.99497 * 9 7 5 11 11 H 1.48495 * 109.47150 * 215.00185 * 9 7 5 12 12 H 1.48501 * 109.46998 * 335.00182 * 9 7 5 13 13 C 1.34777 * 120.00200 * 91.02250 * 4 3 2 14 14 O 1.21721 * 120.00086 * 184.65378 * 13 4 3 15 15 C 1.46661 * 119.99960 * 4.65928 * 13 4 3 16 16 C 1.40028 * 120.86177 * 80.92912 * 15 13 4 17 17 N 1.31613 * 119.27775 * 179.97438 * 16 15 13 18 18 C 1.33681 * 122.38765 * 0.02562 * 17 16 15 19 19 S 1.71461 * 128.64377 * 180.02562 * 18 17 16 20 20 C 1.75596 * 91.30326 * 179.82511 * 19 18 17 21 21 C 1.50699 * 125.25330 * 180.18007 * 20 19 18 22 22 C 1.31037 * 109.49478 * 0.29656 * 20 19 18 23 23 C 1.50700 * 122.31156 * 179.90864 * 22 20 19 24 24 N 1.35129 * 121.41251 * 359.97438 * 18 17 16 25 25 C 1.36392 * 119.26150 * 0.02562 * 24 18 17 26 26 O 1.21871 * 120.30106 * 180.02562 * 25 24 18 27 27 H 1.08999 * 109.47823 * 304.97107 * 1 2 3 28 28 H 1.09003 * 109.47084 * 64.97035 * 1 2 3 29 29 H 1.09000 * 109.47454 * 184.96634 * 1 2 3 30 30 H 1.08991 * 109.47521 * 239.99389 * 2 1 3 31 31 H 1.09003 * 109.46513 * 119.99019 * 2 1 3 32 32 H 1.08999 * 109.47083 * 64.22544 * 3 2 1 33 33 H 1.09005 * 109.46478 * 304.23058 * 3 2 1 34 34 H 0.97002 * 120.00093 * 179.97438 * 8 7 5 35 35 H 1.07997 * 120.36289 * 359.97438 * 16 15 13 36 36 H 1.08996 * 109.47672 * 270.13550 * 21 20 19 37 37 H 1.09007 * 109.46970 * 30.13855 * 21 20 19 38 38 H 1.09001 * 109.47056 * 150.13498 * 21 20 19 39 39 H 1.09004 * 109.47272 * 265.85123 * 23 22 20 40 40 H 1.08997 * 109.47537 * 145.84676 * 23 22 20 41 41 H 1.09006 * 109.47157 * 25.84991 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5014 1.4438 -0.1020 5 6 4.2670 1.3940 1.0325 6 1 5.3405 1.3028 0.9560 7 6 3.6627 1.4609 2.2820 8 7 2.4728 0.9339 2.4656 9 14 4.5416 2.2999 3.7010 10 1 4.0886 3.7107 3.7990 11 1 4.2276 1.5899 4.9669 12 1 6.0073 2.2659 3.4648 13 6 4.0924 1.4939 -1.3122 14 8 5.3034 1.4096 -1.4020 15 6 3.2766 1.6502 -2.5208 16 6 2.8093 2.9103 -2.9141 17 7 2.0799 3.0147 -4.0046 18 6 1.7638 1.9571 -4.7586 19 16 0.8330 1.9080 -6.1978 20 6 1.0461 0.1695 -6.3239 21 6 0.4833 -0.6986 -7.4196 22 6 1.7680 -0.2567 -5.3167 23 6 2.1256 -1.7099 -5.1401 24 7 2.1815 0.7128 -4.4372 25 6 2.9415 0.5328 -3.3190 26 8 3.3289 -0.5810 -3.0116 27 1 -0.3635 0.5890 0.8421 28 1 -0.3633 0.4348 -0.9312 29 1 -0.3634 -1.0238 0.0890 30 1 1.8933 -0.5139 -0.8898 31 1 1.8932 -0.5137 0.8901 32 1 1.7398 1.9341 0.9254 33 1 1.6160 1.9777 -0.8497 34 1 2.0511 0.9803 3.3380 35 1 3.0449 3.7869 -2.3289 36 1 -0.5072 -1.0508 -7.1316 37 1 0.4097 -0.1196 -8.3402 38 1 1.1405 -1.5534 -7.5796 39 1 1.3965 -2.1865 -4.4847 40 1 3.1184 -1.7886 -4.6971 41 1 2.1206 -2.2060 -6.1107 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179933107.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:15 Heat of formation + Delta-G solvation = 19.257459 kcal Electronic energy + Delta-G solvation = -27669.478768 eV Core-core repulsion = 23870.779877 eV Total energy + Delta-G solvation = -3798.698892 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.39617 -38.87855 -37.47446 -37.33653 -35.20677 -33.53825 -32.37938 -31.40874 -30.60055 -29.84203 -27.45912 -26.13288 -25.60365 -24.27651 -23.10149 -21.22250 -20.62759 -19.24427 -19.07571 -18.19303 -17.32275 -16.91480 -16.78066 -16.05932 -15.16544 -14.73919 -14.37388 -14.20362 -14.04613 -13.88968 -13.64272 -13.47695 -13.34527 -13.26728 -13.11721 -13.03053 -12.85578 -12.28278 -12.20056 -11.77643 -11.71510 -11.44293 -11.38737 -11.03014 -10.87703 -10.41695 -10.32578 -10.26914 -10.11214 -10.02718 -9.80829 -9.66035 -9.23029 -8.71000 -8.45604 -7.84078 -7.41766 -6.45951 -3.71155 0.11714 0.54225 1.22304 1.23966 1.97032 2.14119 3.15009 3.28195 3.34158 3.60457 3.77854 4.11146 4.17800 4.22787 4.55276 4.68710 4.89529 4.95509 5.03665 5.05182 5.15554 5.26408 5.43802 5.52429 5.61583 5.75171 5.91791 5.95584 5.98599 6.03981 6.22002 6.26501 6.38925 6.50452 6.68725 6.83557 6.88863 7.33121 7.49263 7.57409 7.71694 7.90177 8.10552 8.50704 9.16934 9.42440 10.00828 10.55806 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.019959 B = 0.003827 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.573347 B = 7315.555933 C = 7552.810741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.125 4.125 3 C 0.122 3.878 4 N -0.423 5.423 5 C -0.314 4.314 6 H 0.109 0.891 7 C 0.040 3.960 8 N -0.846 5.846 9 Si 0.911 3.089 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.502 3.498 14 O -0.582 6.582 15 C -0.253 4.253 16 C 0.192 3.808 17 N -0.512 5.512 18 C 0.266 3.734 19 S 0.236 5.764 20 C -0.231 4.231 21 C -0.069 4.069 22 C 0.101 3.899 23 C -0.103 4.103 24 N -0.452 5.452 25 C 0.538 3.462 26 O -0.495 6.495 27 H 0.054 0.946 28 H 0.030 0.970 29 H 0.041 0.959 30 H 0.035 0.965 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.028 0.972 34 H 0.269 0.731 35 H 0.181 0.819 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.763 -0.611 -17.578 20.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.163 4.163 3 C -0.002 4.002 4 N -0.139 5.139 5 C -0.440 4.440 6 H 0.127 0.873 7 C -0.165 4.165 8 N -0.484 5.484 9 Si 0.737 3.263 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.192 1.192 13 C 0.288 3.712 14 O -0.467 6.467 15 C -0.269 4.269 16 C 0.043 3.957 17 N -0.240 5.240 18 C -0.099 4.099 19 S 0.489 5.511 20 C -0.350 4.350 21 C -0.128 4.128 22 C -0.008 4.008 23 C -0.161 4.161 24 N -0.163 5.163 25 C 0.338 3.662 26 O -0.370 6.370 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.116 0.884 32 H 0.124 0.876 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.198 0.802 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.118 0.882 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.906 0.326 -18.075 21.112 hybrid contribution 1.126 -1.198 1.916 2.525 sum -9.780 -0.872 -16.158 18.907 Atomic orbital electron populations 1.21600 0.97507 1.00229 1.00004 1.21838 0.93566 0.98245 1.02649 1.21721 0.80433 0.96947 1.01096 1.43746 1.05554 1.60101 1.04475 1.19715 0.92825 1.49187 0.82322 0.87292 1.25203 0.96260 0.96440 0.98592 1.70226 1.16964 1.36980 1.24212 0.86162 0.80506 0.79840 0.79830 1.20302 1.21190 1.19173 1.16526 0.86734 0.86336 0.81580 1.90641 1.13777 1.56687 1.85632 1.21788 1.09732 0.92625 1.02784 1.23096 0.86537 0.97064 0.89022 1.68083 1.22058 1.24397 1.09446 1.25466 0.98735 0.83704 1.01997 1.83951 1.51209 1.01345 1.14617 1.23660 1.09316 0.98473 1.03509 1.20289 1.01280 0.97627 0.93631 1.19623 0.97443 0.93924 0.89781 1.20932 1.05444 0.86221 1.03547 1.45254 1.41069 1.07050 1.22892 1.17389 0.78832 0.91214 0.78719 1.90890 1.52426 1.25133 1.68501 0.92653 0.95058 0.93953 0.94645 0.88357 0.87570 0.95407 0.92105 0.80232 0.89979 0.90477 0.89730 0.89417 0.88183 0.89661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.91 37.16 0.37 -2.14 16 2 C -0.12 -2.84 5.86 -26.73 -0.16 -3.00 16 3 C 0.12 2.86 4.54 -4.04 -0.02 2.84 16 4 N -0.42 -11.29 2.62 -116.29 -0.30 -11.59 16 5 C -0.31 -8.86 9.40 -14.99 -0.14 -9.00 16 6 H 0.11 3.29 7.35 -52.49 -0.39 2.90 16 7 C 0.04 1.04 4.92 -17.46 -0.09 0.95 16 8 N -0.85 -21.48 8.74 55.50 0.48 -21.00 16 9 Si 0.91 20.32 29.66 -169.99 -5.04 15.28 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 C 0.50 13.44 6.64 -12.86 -0.09 13.35 16 14 O -0.58 -17.73 16.70 5.17 0.09 -17.64 16 15 C -0.25 -5.64 4.08 -104.65 -0.43 -6.07 16 16 C 0.19 3.53 10.28 -16.97 -0.17 3.36 16 17 N -0.51 -8.48 10.39 -13.56 -0.14 -8.62 16 18 C 0.27 4.03 8.07 -87.57 -0.71 3.32 16 19 S 0.24 2.36 23.13 -107.50 -2.49 -0.12 16 20 C -0.23 -2.19 6.42 -36.04 -0.23 -2.42 16 21 C -0.07 -0.37 10.01 36.01 0.36 0.00 16 22 C 0.10 1.30 6.62 -81.88 -0.54 0.76 16 23 C -0.10 -1.19 9.08 36.01 0.33 -0.86 16 24 N -0.45 -7.56 2.82 -62.86 -0.18 -7.74 16 25 C 0.54 11.43 7.36 -14.34 -0.11 11.32 16 26 O -0.49 -11.74 13.73 5.04 0.07 -11.67 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.03 0.86 7.30 -51.93 -0.38 0.48 16 31 H 0.10 2.51 6.49 -51.93 -0.34 2.18 16 32 H 0.11 2.61 5.66 -51.93 -0.29 2.31 16 33 H 0.03 0.60 6.15 -51.93 -0.32 0.28 16 34 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 35 H 0.18 2.93 8.06 -52.49 -0.42 2.51 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 38 H 0.08 0.36 6.51 -51.93 -0.34 0.03 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.10 1.48 6.19 -51.93 -0.32 1.16 16 41 H 0.08 0.65 6.38 -51.93 -0.33 0.31 16 LS Contribution 349.55 15.07 5.27 5.27 Total: -1.00 -34.44 349.55 -8.66 -43.10 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -4.80 Total: 2.31 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: -1.62 Total: 12.41 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.14 Total: -48.94 kcal Atomic # 8 Polarization: -29.47 SS G_CDS: 0.16 Total: -29.31 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.04 Total: 15.28 kcal Atomic # 16 Polarization: 2.36 SS G_CDS: -2.49 Total: -0.12 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.44 -8.66 -43.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179933107.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.361 kcal (2) G-P(sol) polarization free energy of solvation -34.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds