Wall clock time and date at job start Tue Mar 31 2020 18:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47109 * 2 1 4 4 N 1.46492 * 109.47030 * 184.23331 * 3 2 1 5 5 C 1.36959 * 120.00166 * 271.02388 * 4 3 2 6 6 H 1.08000 * 120.00102 * 174.34962 * 5 4 3 7 7 C 1.38961 * 119.99539 * 354.34699 * 5 4 3 8 8 N 1.31424 * 120.00486 * 33.43524 * 7 5 4 9 9 Si 1.86807 * 119.99899 * 213.43490 * 7 5 4 10 10 H 1.48505 * 109.46852 * 94.99497 * 9 7 5 11 11 H 1.48495 * 109.47150 * 215.00185 * 9 7 5 12 12 H 1.48501 * 109.46998 * 335.00182 * 9 7 5 13 13 C 1.34777 * 120.00200 * 91.02250 * 4 3 2 14 14 O 1.21721 * 120.00086 * 184.65378 * 13 4 3 15 15 C 1.46661 * 119.99960 * 4.65928 * 13 4 3 16 16 C 1.40028 * 120.86177 * 80.92912 * 15 13 4 17 17 N 1.31613 * 119.27775 * 179.97438 * 16 15 13 18 18 C 1.33681 * 122.38765 * 0.02562 * 17 16 15 19 19 S 1.71461 * 128.64377 * 180.02562 * 18 17 16 20 20 C 1.75596 * 91.30326 * 179.82511 * 19 18 17 21 21 C 1.50699 * 125.25330 * 180.18007 * 20 19 18 22 22 C 1.31037 * 109.49478 * 0.29656 * 20 19 18 23 23 C 1.50700 * 122.31156 * 179.90864 * 22 20 19 24 24 N 1.35129 * 121.41251 * 359.97438 * 18 17 16 25 25 C 1.36392 * 119.26150 * 0.02562 * 24 18 17 26 26 O 1.21871 * 120.30106 * 180.02562 * 25 24 18 27 27 H 1.08999 * 109.47823 * 304.97107 * 1 2 3 28 28 H 1.09003 * 109.47084 * 64.97035 * 1 2 3 29 29 H 1.09000 * 109.47454 * 184.96634 * 1 2 3 30 30 H 1.08991 * 109.47521 * 239.99389 * 2 1 3 31 31 H 1.09003 * 109.46513 * 119.99019 * 2 1 3 32 32 H 1.08999 * 109.47083 * 64.22544 * 3 2 1 33 33 H 1.09005 * 109.46478 * 304.23058 * 3 2 1 34 34 H 0.97002 * 120.00093 * 179.97438 * 8 7 5 35 35 H 1.07997 * 120.36289 * 359.97438 * 16 15 13 36 36 H 1.08996 * 109.47672 * 270.13550 * 21 20 19 37 37 H 1.09007 * 109.46970 * 30.13855 * 21 20 19 38 38 H 1.09001 * 109.47056 * 150.13498 * 21 20 19 39 39 H 1.09004 * 109.47272 * 265.85123 * 23 22 20 40 40 H 1.08997 * 109.47537 * 145.84676 * 23 22 20 41 41 H 1.09006 * 109.47157 * 25.84991 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5014 1.4438 -0.1020 5 6 4.2670 1.3940 1.0325 6 1 5.3405 1.3028 0.9560 7 6 3.6627 1.4609 2.2820 8 7 2.4728 0.9339 2.4656 9 14 4.5416 2.2999 3.7010 10 1 4.0886 3.7107 3.7990 11 1 4.2276 1.5899 4.9669 12 1 6.0073 2.2659 3.4648 13 6 4.0924 1.4939 -1.3122 14 8 5.3034 1.4096 -1.4020 15 6 3.2766 1.6502 -2.5208 16 6 2.8093 2.9103 -2.9141 17 7 2.0799 3.0147 -4.0046 18 6 1.7638 1.9571 -4.7586 19 16 0.8330 1.9080 -6.1978 20 6 1.0461 0.1695 -6.3239 21 6 0.4833 -0.6986 -7.4196 22 6 1.7680 -0.2567 -5.3167 23 6 2.1256 -1.7099 -5.1401 24 7 2.1815 0.7128 -4.4372 25 6 2.9415 0.5328 -3.3190 26 8 3.3289 -0.5810 -3.0116 27 1 -0.3635 0.5890 0.8421 28 1 -0.3633 0.4348 -0.9312 29 1 -0.3634 -1.0238 0.0890 30 1 1.8933 -0.5139 -0.8898 31 1 1.8932 -0.5137 0.8901 32 1 1.7398 1.9341 0.9254 33 1 1.6160 1.9777 -0.8497 34 1 2.0511 0.9803 3.3380 35 1 3.0449 3.7869 -2.3289 36 1 -0.5072 -1.0508 -7.1316 37 1 0.4097 -0.1196 -8.3402 38 1 1.1405 -1.5534 -7.5796 39 1 1.3965 -2.1865 -4.4847 40 1 3.1184 -1.7886 -4.6971 41 1 2.1206 -2.2060 -6.1107 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179933107.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:14 Heat of formation + Delta-G solvation = -3.497005 kcal Electronic energy + Delta-G solvation = -27670.465476 eV Core-core repulsion = 23870.779877 eV Total energy + Delta-G solvation = -3799.685599 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.69132 -40.63338 -39.01455 -38.63767 -37.21844 -34.63441 -34.24196 -33.30816 -32.13542 -30.68014 -28.58446 -27.72915 -27.15133 -26.05973 -24.35696 -22.75287 -22.33186 -20.75134 -20.24559 -19.52977 -18.99379 -18.60253 -18.17029 -17.74911 -16.83363 -16.38245 -16.09053 -15.47822 -15.39094 -15.23998 -15.12249 -14.96003 -14.67956 -14.59743 -14.27583 -14.11819 -14.01622 -13.72419 -13.66719 -13.29221 -13.02918 -12.90283 -12.82075 -12.58026 -12.21085 -12.16293 -12.13005 -12.12239 -11.75662 -11.53763 -11.24583 -11.02515 -10.72899 -10.57916 -10.30691 -9.84880 -8.69392 -8.47254 -5.83147 -1.17162 -0.53048 0.10405 0.23363 0.65596 0.88638 1.34517 1.42404 1.54527 1.91701 2.15118 2.30208 2.86917 2.90973 2.93190 3.20928 3.68537 3.75161 3.91097 3.97306 4.19557 4.25448 4.33455 4.42390 4.48429 4.51031 4.62070 4.70173 4.80965 4.85282 4.89755 4.92859 4.97822 5.09747 5.20801 5.24454 5.35232 5.40777 5.49720 5.75403 6.00688 6.22890 6.46376 6.48068 7.11835 7.40620 8.01238 8.53820 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.019959 B = 0.003827 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.573347 B = 7315.555933 C = 7552.810741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 C 0.131 3.869 4 N -0.430 5.430 5 C -0.367 4.367 6 H 0.071 0.929 7 C 0.020 3.980 8 N -0.848 5.848 9 Si 0.979 3.021 10 H -0.262 1.262 11 H -0.270 1.270 12 H -0.281 1.281 13 C 0.495 3.505 14 O -0.643 6.643 15 C -0.322 4.322 16 C 0.232 3.768 17 N -0.523 5.523 18 C 0.241 3.759 19 S 0.354 5.646 20 C -0.190 4.190 21 C -0.077 4.077 22 C 0.046 3.954 23 C -0.096 4.096 24 N -0.448 5.448 25 C 0.534 3.466 26 O -0.546 6.546 27 H 0.062 0.938 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.011 0.989 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.046 0.954 34 H 0.279 0.721 35 H 0.194 0.806 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.934 0.303 -20.621 25.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.153 4.153 3 C 0.009 3.991 4 N -0.145 5.145 5 C -0.494 4.494 6 H 0.089 0.911 7 C -0.186 4.186 8 N -0.483 5.483 9 Si 0.802 3.198 10 H -0.187 1.187 11 H -0.195 1.195 12 H -0.206 1.206 13 C 0.284 3.716 14 O -0.533 6.533 15 C -0.339 4.339 16 C 0.078 3.922 17 N -0.252 5.252 18 C -0.120 4.120 19 S 0.609 5.391 20 C -0.309 4.309 21 C -0.135 4.135 22 C -0.060 4.060 23 C -0.155 4.155 24 N -0.156 5.156 25 C 0.337 3.663 26 O -0.425 6.425 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.211 0.789 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -15.196 1.211 -21.197 26.110 hybrid contribution 2.159 -1.491 2.481 3.611 sum -13.036 -0.280 -18.716 22.811 Atomic orbital electron populations 1.21485 0.93729 1.01655 1.01163 1.21669 0.96727 0.97115 0.99784 1.21687 0.78894 0.97435 1.01130 1.43929 1.06666 1.59574 1.04348 1.19523 0.91754 1.53844 0.84276 0.91090 1.25896 0.97265 0.95439 1.00002 1.70263 1.17406 1.35308 1.25368 0.85182 0.78475 0.79276 0.76869 1.18688 1.19502 1.20638 1.17174 0.86533 0.85024 0.82908 1.90544 1.16635 1.59215 1.86915 1.21151 1.14791 0.94816 1.03093 1.23242 0.84202 0.95891 0.88864 1.68213 1.22988 1.24661 1.09332 1.26706 0.98608 0.83030 1.03626 1.83791 1.45988 1.00294 1.09037 1.24488 1.05064 0.99266 1.02057 1.20683 1.02387 0.97753 0.92708 1.20004 1.00913 0.94036 0.91093 1.20881 1.02815 0.86287 1.05489 1.45102 1.39742 1.08623 1.22157 1.17156 0.79195 0.90236 0.79755 1.90845 1.54856 1.26475 1.70309 0.91940 0.93373 0.92333 0.97043 0.91579 0.88500 0.93577 0.91019 0.78925 0.87618 0.87682 0.88107 0.89884 0.92452 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.46 9.91 71.98 0.71 -3.74 16 2 C -0.11 -5.47 5.86 30.60 0.18 -5.29 16 3 C 0.13 6.48 4.54 86.38 0.39 6.87 16 4 N -0.43 -24.85 2.62 -640.05 -1.68 -26.52 16 5 C -0.37 -22.44 9.40 84.07 0.79 -21.65 16 6 H 0.07 4.76 7.35 -2.91 -0.02 4.74 16 7 C 0.02 1.06 4.92 84.93 0.42 1.48 16 8 N -0.85 -43.94 8.74 21.67 0.19 -43.75 16 9 Si 0.98 42.89 29.66 68.60 2.03 44.92 16 10 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 11 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 C 0.49 29.08 6.64 86.44 0.57 29.65 16 14 O -0.64 -43.48 16.70 -4.42 -0.07 -43.55 16 15 C -0.32 -15.39 4.08 -19.88 -0.08 -15.47 16 16 C 0.23 8.81 10.28 85.16 0.88 9.68 16 17 N -0.52 -16.77 10.39 -196.81 -2.04 -18.81 16 18 C 0.24 6.85 8.07 179.28 1.45 8.29 16 19 S 0.35 5.25 23.13 -56.49 -1.31 3.94 16 20 C -0.19 -2.68 6.42 25.61 0.16 -2.51 16 21 C -0.08 -0.30 10.01 71.24 0.71 0.42 16 22 C 0.05 1.10 6.62 41.63 0.28 1.38 16 23 C -0.10 -2.18 9.08 71.24 0.65 -1.54 16 24 N -0.45 -14.97 2.82 -470.00 -1.32 -16.29 16 25 C 0.53 24.25 7.36 84.75 0.62 24.88 16 26 O -0.55 -28.52 13.73 -4.90 -0.07 -28.58 16 27 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.01 0.57 7.30 -2.39 -0.02 0.55 16 31 H 0.07 3.56 6.49 -2.39 -0.02 3.54 16 32 H 0.10 4.89 5.66 -2.39 -0.01 4.88 16 33 H 0.05 2.07 6.15 -2.38 -0.01 2.05 16 34 H 0.28 13.24 8.31 -92.71 -0.77 12.47 16 35 H 0.19 6.50 8.06 -2.91 -0.02 6.48 16 36 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.10 -0.03 8.14 -2.38 -0.02 -0.05 16 38 H 0.10 0.22 6.51 -2.39 -0.02 0.21 16 39 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 40 H 0.06 1.84 6.19 -2.39 -0.01 1.82 16 41 H 0.13 1.60 6.38 -2.38 -0.02 1.58 16 Total: -1.00 -87.62 349.55 4.54 -83.08 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 1.08 Total: 13.13 kcal Atomic # 6 Polarization: 24.71 SS G_CDS: 7.73 Total: 32.45 kcal Atomic # 7 Polarization: -100.52 SS G_CDS: -4.86 Total: -105.38 kcal Atomic # 8 Polarization: -72.00 SS G_CDS: -0.14 Total: -72.14 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 16 Polarization: 5.25 SS G_CDS: -1.31 Total: 3.94 kcal Total: -87.62 4.54 -83.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179933107.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.579 kcal (2) G-P(sol) polarization free energy of solvation -87.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds