Wall clock time and date at job start Tue Mar 31 2020 18:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 S 1.75595 * 125.25496 * 2 1 4 4 C 1.71467 * 91.30611 * 180.02562 * 3 2 1 5 5 N 1.33673 * 128.66405 * 179.97438 * 4 3 2 6 6 C 1.31621 * 122.37241 * 180.02562 * 5 4 3 7 7 C 1.39979 * 119.29085 * 359.65727 * 6 5 4 8 8 C 1.46746 * 120.85880 * 180.31393 * 7 6 5 9 9 O 1.21695 * 120.00151 * 101.53051 * 8 7 6 10 10 N 1.34784 * 119.99930 * 281.53503 * 8 7 6 11 11 C 1.46489 * 120.00013 * 4.33461 * 10 8 7 12 12 C 1.46501 * 119.99504 * 184.33164 * 10 8 7 13 13 H 1.09000 * 109.47550 * 359.97438 * 12 10 8 14 14 C 1.52996 * 109.46981 * 120.00305 * 12 10 8 15 15 C 1.50706 * 109.47052 * 239.99728 * 12 10 8 16 16 H 1.08004 * 119.99855 * 0.02562 * 15 12 10 17 17 C 1.37872 * 120.00140 * 180.02562 * 15 12 10 18 18 N 1.31512 * 120.00081 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99825 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.46746 * 90.00236 * 19 17 15 21 21 H 1.48503 * 109.46874 * 209.99846 * 19 17 15 22 22 H 1.48490 * 109.47393 * 330.00327 * 19 17 15 23 23 C 1.41281 * 118.28034 * 0.61608 * 7 6 5 24 24 O 1.21879 * 120.30337 * 179.70228 * 23 7 6 25 25 N 1.35124 * 109.93954 * 0.02562 * 4 3 2 26 26 C 1.31040 * 125.25350 * 180.02562 * 2 1 3 27 27 C 1.50705 * 122.30929 * 359.95302 * 26 2 1 28 28 H 1.09005 * 109.47186 * 269.97624 * 1 2 3 29 29 H 1.08999 * 109.47137 * 29.97066 * 1 2 3 30 30 H 1.08999 * 109.47146 * 149.97558 * 1 2 3 31 31 H 1.07996 * 120.35131 * 180.02562 * 6 5 4 32 32 H 1.08999 * 109.47510 * 89.00161 * 11 10 8 33 33 H 1.08999 * 109.47117 * 209.00545 * 11 10 8 34 34 H 1.09006 * 109.47392 * 329.00229 * 11 10 8 35 35 H 1.09002 * 109.46938 * 299.99453 * 14 12 10 36 36 H 1.09000 * 109.47452 * 59.99360 * 14 12 10 37 37 H 1.08996 * 109.47355 * 179.97438 * 14 12 10 38 38 H 0.97005 * 119.99972 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.47132 * 270.02837 * 27 26 2 40 40 H 1.09005 * 109.46681 * 30.02419 * 27 26 2 41 41 H 1.08995 * 109.47181 * 150.02043 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5205 1.4339 0.0000 4 6 3.9429 0.4763 -0.0008 5 7 5.2186 0.8758 -0.0016 6 6 6.2233 0.0255 -0.0026 7 6 5.9574 -1.3488 0.0045 8 6 7.0512 -2.3270 0.0105 9 8 7.3636 -2.8842 1.0463 10 7 7.7100 -2.6083 -1.1312 11 6 7.3989 -1.8698 -2.3575 12 6 8.7374 -3.6527 -1.1458 13 1 8.8285 -4.0866 -0.1500 14 6 8.3421 -4.7430 -2.1436 15 6 10.0580 -3.0526 -1.5545 16 1 10.1254 -1.9986 -1.7804 17 6 11.1801 -3.8491 -1.6400 18 7 11.0980 -5.1326 -1.3654 19 14 12.8169 -3.1053 -2.1473 20 1 13.5442 -2.6388 -0.9395 21 1 13.6300 -4.1305 -2.8496 22 1 12.5777 -1.9554 -3.0560 23 6 4.6088 -1.7697 -0.0009 24 8 4.3352 -2.9574 -0.0005 25 7 3.6158 -0.8347 -0.0016 26 6 2.2633 -1.0701 -0.0005 27 6 1.6881 -2.4630 -0.0001 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 7.2419 0.3844 -0.0028 32 1 8.0233 -0.9781 -2.4130 33 1 7.5929 -2.5038 -3.2226 34 1 6.3486 -1.5778 -2.3493 35 1 7.3869 -5.1770 -1.8480 36 1 8.2512 -4.3087 -3.1393 37 1 9.1066 -5.5198 -2.1548 38 1 11.8876 -5.6929 -1.4253 39 1 1.5497 -2.7987 1.0277 40 1 0.7267 -2.4592 -0.5137 41 1 2.3719 -3.1386 -0.5140 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180381458.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:55 Heat of formation + Delta-G solvation = 13.677730 kcal Electronic energy + Delta-G solvation = -26904.467600 eV Core-core repulsion = 23105.526753 eV Total energy + Delta-G solvation = -3798.940847 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.71135 -39.25475 -37.81475 -37.65008 -35.22070 -33.81936 -32.80565 -31.17511 -30.05994 -29.20889 -27.55385 -26.28877 -25.84161 -25.14266 -23.46018 -22.10131 -20.50909 -19.35965 -18.69574 -18.53125 -17.46218 -17.15854 -16.55872 -16.03482 -15.56826 -15.26847 -14.60908 -14.39735 -14.32657 -14.10800 -13.89260 -13.69679 -13.57477 -13.35878 -13.22534 -12.92298 -12.56471 -12.46804 -12.17309 -12.07671 -11.59732 -11.52426 -11.49101 -11.01690 -10.79690 -10.66676 -10.61826 -10.28455 -10.20587 -10.13006 -10.09561 -9.54570 -9.13906 -9.00295 -8.38729 -7.77669 -7.54762 -6.02484 -4.10617 -0.19668 0.27226 0.96195 0.98116 1.66924 1.83797 3.21238 3.30431 3.36672 3.37609 3.38888 3.81853 3.88772 4.14176 4.35417 4.44141 4.48085 4.70351 4.88194 4.98205 4.99421 5.18337 5.24679 5.28865 5.36221 5.40107 5.66155 5.74764 5.79057 5.96290 6.09207 6.20317 6.31537 6.82960 6.90881 7.11858 7.26669 7.48020 7.55117 7.58376 7.75831 8.06228 8.23782 8.55100 8.86945 9.07085 9.55565 11.02904 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.025020 B = 0.003060 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.837713 B = 9148.033347 C = 9765.200782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.227 4.227 3 S 0.255 5.745 4 C 0.272 3.728 5 N -0.514 5.514 6 C 0.216 3.784 7 C -0.296 4.296 8 C 0.580 3.420 9 O -0.536 6.536 10 N -0.582 5.582 11 C 0.092 3.908 12 C 0.259 3.741 13 H 0.064 0.936 14 C -0.147 4.147 15 C -0.524 4.524 16 H 0.060 0.940 17 C 0.064 3.936 18 N -0.888 5.888 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.542 3.458 24 O -0.497 6.497 25 N -0.451 5.451 26 C 0.098 3.902 27 C -0.106 4.106 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.185 0.815 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.013 0.987 36 H 0.030 0.970 37 H 0.095 0.905 38 H 0.263 0.737 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.755 14.189 -0.455 27.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.346 4.346 3 S 0.509 5.491 4 C -0.092 4.092 5 N -0.242 5.242 6 C 0.066 3.934 7 C -0.312 4.312 8 C 0.364 3.636 9 O -0.414 6.414 10 N -0.312 5.312 11 C -0.052 4.052 12 C 0.159 3.841 13 H 0.082 0.918 14 C -0.205 4.205 15 C -0.563 4.563 16 H 0.078 0.922 17 C -0.138 4.138 18 N -0.526 5.526 19 Si 0.727 3.273 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 C 0.343 3.657 24 O -0.372 6.372 25 N -0.161 5.161 26 C -0.010 4.010 27 C -0.165 4.165 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.202 0.798 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.032 0.968 36 H 0.049 0.951 37 H 0.113 0.887 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -23.587 15.041 0.071 27.975 hybrid contribution 1.306 -1.687 -0.363 2.165 sum -22.281 13.354 -0.292 25.978 Atomic orbital electron populations 1.20321 0.84837 1.04122 1.03730 1.23763 1.02002 0.94304 1.14539 1.84119 0.86211 1.02758 1.76055 1.25654 1.00928 0.85567 0.97041 1.68175 0.94240 1.35596 1.26217 1.23124 0.97986 0.87592 0.84711 1.21642 0.93069 0.96555 1.19900 1.17025 0.80922 0.81248 0.84427 1.90776 1.67122 1.51958 1.31513 1.48172 1.38090 1.37442 1.07514 1.21486 0.98048 0.96839 0.88798 1.18988 0.83607 0.83443 0.98040 0.91787 1.22095 0.99307 1.01119 0.98029 1.21317 0.92749 0.95326 1.46922 0.92179 1.24897 0.98966 0.94819 0.95129 1.69888 1.29587 1.04552 1.48576 0.86485 0.83421 0.78781 0.78630 1.20602 1.21170 1.19914 1.17103 0.84147 0.85242 0.79178 1.90912 1.82238 1.14401 1.49617 1.45196 1.07748 1.08436 1.54679 1.19650 0.80809 0.99617 1.00932 1.20991 1.01745 0.89022 1.04724 0.89793 0.90293 0.89544 0.79795 0.93115 0.90634 0.93957 0.96822 0.95135 0.88685 0.92699 0.89337 0.89449 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.24 10.02 36.00 0.36 0.12 16 2 C -0.23 -1.66 6.42 -36.04 -0.23 -1.89 16 3 S 0.25 1.97 23.13 -107.50 -2.49 -0.51 16 4 C 0.27 3.40 8.07 -87.59 -0.71 2.69 16 5 N -0.51 -7.11 10.39 -13.57 -0.14 -7.25 16 6 C 0.22 3.32 10.81 -16.99 -0.18 3.13 16 7 C -0.30 -5.59 3.85 -104.65 -0.40 -6.00 16 8 C 0.58 13.63 6.69 -12.82 -0.09 13.55 16 9 O -0.54 -14.86 16.45 5.19 0.09 -14.77 16 10 N -0.58 -13.52 2.75 -176.78 -0.49 -14.00 16 11 C 0.09 1.72 9.33 59.84 0.56 2.28 16 12 C 0.26 6.97 2.63 -69.08 -0.18 6.79 16 13 H 0.06 1.99 6.91 -51.93 -0.36 1.63 16 14 C -0.15 -3.73 8.95 37.16 0.33 -3.40 16 15 C -0.52 -14.51 8.37 -34.44 -0.29 -14.80 16 16 H 0.06 1.62 7.65 -52.48 -0.40 1.22 16 17 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 18 N -0.89 -25.70 11.32 55.43 0.63 -25.08 16 19 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 23 C 0.54 9.88 7.54 -14.37 -0.11 9.77 16 24 O -0.50 -10.34 14.29 5.03 0.07 -10.27 16 25 N -0.45 -6.31 2.82 -62.88 -0.18 -6.48 16 26 C 0.10 1.03 6.62 -81.88 -0.54 0.49 16 27 C -0.11 -0.99 9.15 36.01 0.33 -0.66 16 28 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 0.22 6.57 -51.93 -0.34 -0.12 16 31 H 0.19 2.46 8.06 -52.49 -0.42 2.04 16 32 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.40 6.43 -51.93 -0.33 1.07 16 34 H 0.04 0.70 6.84 -51.93 -0.35 0.35 16 35 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.03 0.71 6.66 -51.93 -0.35 0.36 16 37 H 0.09 2.60 6.07 -51.93 -0.32 2.28 16 38 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.09 0.50 6.52 -51.93 -0.34 0.16 16 41 H 0.10 1.30 5.95 -51.93 -0.31 0.99 16 LS Contribution 352.40 15.07 5.31 5.31 Total: -1.00 -36.19 352.40 -8.23 -44.42 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: -4.77 Total: -1.46 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: -1.24 Total: 13.77 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: -0.18 Total: -52.81 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: 0.16 Total: -25.04 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.49 Total: -0.51 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -36.19 -8.23 -44.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180381458.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.102 kcal (2) G-P(sol) polarization free energy of solvation -36.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds