Wall clock time and date at job start Tue Mar 31 2020 18:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 S 1.75595 * 125.25496 * 2 1 4 4 C 1.71467 * 91.30611 * 180.02562 * 3 2 1 5 5 N 1.33673 * 128.66405 * 179.97438 * 4 3 2 6 6 C 1.31621 * 122.37241 * 180.02562 * 5 4 3 7 7 C 1.39979 * 119.29085 * 359.65727 * 6 5 4 8 8 C 1.46746 * 120.85880 * 180.31393 * 7 6 5 9 9 O 1.21695 * 120.00151 * 101.53051 * 8 7 6 10 10 N 1.34784 * 119.99930 * 281.53503 * 8 7 6 11 11 C 1.46489 * 120.00013 * 4.33461 * 10 8 7 12 12 C 1.46501 * 119.99504 * 184.33164 * 10 8 7 13 13 H 1.09000 * 109.47550 * 359.97438 * 12 10 8 14 14 C 1.52996 * 109.46981 * 120.00305 * 12 10 8 15 15 C 1.50706 * 109.47052 * 239.99728 * 12 10 8 16 16 H 1.08004 * 119.99855 * 0.02562 * 15 12 10 17 17 C 1.37872 * 120.00140 * 180.02562 * 15 12 10 18 18 N 1.31512 * 120.00081 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99825 * 179.97438 * 17 15 12 20 20 H 1.48505 * 109.46746 * 90.00236 * 19 17 15 21 21 H 1.48503 * 109.46874 * 209.99846 * 19 17 15 22 22 H 1.48490 * 109.47393 * 330.00327 * 19 17 15 23 23 C 1.41281 * 118.28034 * 0.61608 * 7 6 5 24 24 O 1.21879 * 120.30337 * 179.70228 * 23 7 6 25 25 N 1.35124 * 109.93954 * 0.02562 * 4 3 2 26 26 C 1.31040 * 125.25350 * 180.02562 * 2 1 3 27 27 C 1.50705 * 122.30929 * 359.95302 * 26 2 1 28 28 H 1.09005 * 109.47186 * 269.97624 * 1 2 3 29 29 H 1.08999 * 109.47137 * 29.97066 * 1 2 3 30 30 H 1.08999 * 109.47146 * 149.97558 * 1 2 3 31 31 H 1.07996 * 120.35131 * 180.02562 * 6 5 4 32 32 H 1.08999 * 109.47510 * 89.00161 * 11 10 8 33 33 H 1.08999 * 109.47117 * 209.00545 * 11 10 8 34 34 H 1.09006 * 109.47392 * 329.00229 * 11 10 8 35 35 H 1.09002 * 109.46938 * 299.99453 * 14 12 10 36 36 H 1.09000 * 109.47452 * 59.99360 * 14 12 10 37 37 H 1.08996 * 109.47355 * 179.97438 * 14 12 10 38 38 H 0.97005 * 119.99972 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.47132 * 270.02837 * 27 26 2 40 40 H 1.09005 * 109.46681 * 30.02419 * 27 26 2 41 41 H 1.08995 * 109.47181 * 150.02043 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5205 1.4339 0.0000 4 6 3.9429 0.4763 -0.0008 5 7 5.2186 0.8758 -0.0016 6 6 6.2233 0.0255 -0.0026 7 6 5.9574 -1.3488 0.0045 8 6 7.0512 -2.3270 0.0105 9 8 7.3636 -2.8842 1.0463 10 7 7.7100 -2.6083 -1.1312 11 6 7.3989 -1.8698 -2.3575 12 6 8.7374 -3.6527 -1.1458 13 1 8.8285 -4.0866 -0.1500 14 6 8.3421 -4.7430 -2.1436 15 6 10.0580 -3.0526 -1.5545 16 1 10.1254 -1.9986 -1.7804 17 6 11.1801 -3.8491 -1.6400 18 7 11.0980 -5.1326 -1.3654 19 14 12.8169 -3.1053 -2.1473 20 1 13.5442 -2.6388 -0.9395 21 1 13.6300 -4.1305 -2.8496 22 1 12.5777 -1.9554 -3.0560 23 6 4.6088 -1.7697 -0.0009 24 8 4.3352 -2.9574 -0.0005 25 7 3.6158 -0.8347 -0.0016 26 6 2.2633 -1.0701 -0.0005 27 6 1.6881 -2.4630 -0.0001 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 7.2419 0.3844 -0.0028 32 1 8.0233 -0.9781 -2.4130 33 1 7.5929 -2.5038 -3.2226 34 1 6.3486 -1.5778 -2.3493 35 1 7.3869 -5.1770 -1.8480 36 1 8.2512 -4.3087 -3.1393 37 1 9.1066 -5.5198 -2.1548 38 1 11.8876 -5.6929 -1.4253 39 1 1.5497 -2.7987 1.0277 40 1 0.7267 -2.4592 -0.5137 41 1 2.3719 -3.1386 -0.5140 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180381458.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:55 Heat of formation + Delta-G solvation = -11.159542 kcal Electronic energy + Delta-G solvation = -26905.544624 eV Core-core repulsion = 23105.526753 eV Total energy + Delta-G solvation = -3800.017872 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.78970 -40.86421 -39.14370 -38.73585 -37.16721 -34.93855 -34.53906 -32.60801 -31.07716 -30.68822 -28.42012 -27.76604 -27.36123 -27.04347 -24.51066 -23.68255 -21.82813 -20.32215 -20.26267 -19.65049 -18.75788 -18.40019 -18.27982 -17.71146 -17.32606 -16.56362 -16.31662 -15.74795 -15.29320 -15.25609 -15.00769 -14.75086 -14.65639 -14.50384 -14.30886 -14.15114 -13.93713 -13.73201 -13.53979 -13.27453 -12.99180 -12.95587 -12.91030 -12.76494 -12.68972 -12.23132 -12.21404 -12.11800 -11.88520 -11.32229 -11.23014 -11.08386 -10.85296 -10.55449 -10.44375 -9.43128 -8.81338 -8.14587 -6.32233 -1.26470 -0.58831 0.02904 0.18069 0.59618 0.78909 1.42429 1.44511 1.54685 1.66965 2.02913 2.30160 2.48204 2.83703 2.96553 3.13194 3.58672 3.69632 3.73822 3.88780 4.15437 4.26473 4.33065 4.48082 4.56964 4.59032 4.68541 4.77947 4.79693 4.81057 4.84046 4.89530 4.96173 4.99876 5.21302 5.32725 5.41162 5.54349 5.63582 5.97227 6.11859 6.15250 6.34616 6.69214 6.74627 7.22695 7.41704 8.90765 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.025020 B = 0.003060 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.837713 B = 9148.033347 C = 9765.200782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.190 4.190 3 S 0.366 5.634 4 C 0.247 3.753 5 N -0.524 5.524 6 C 0.256 3.744 7 C -0.354 4.354 8 C 0.580 3.420 9 O -0.599 6.599 10 N -0.588 5.588 11 C 0.094 3.906 12 C 0.263 3.737 13 H 0.006 0.994 14 C -0.132 4.132 15 C -0.537 4.537 16 H 0.067 0.933 17 C 0.012 3.988 18 N -0.921 5.921 19 Si 0.972 3.028 20 H -0.281 1.281 21 H -0.280 1.280 22 H -0.258 1.258 23 C 0.538 3.462 24 O -0.547 6.547 25 N -0.447 5.447 26 C 0.048 3.952 27 C -0.101 4.101 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.200 0.800 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.009 0.991 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.265 0.735 39 H 0.085 0.915 40 H 0.128 0.872 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.802 18.569 -1.837 32.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.309 4.309 3 S 0.622 5.378 4 C -0.114 4.114 5 N -0.252 5.252 6 C 0.100 3.900 7 C -0.371 4.371 8 C 0.366 3.634 9 O -0.481 6.481 10 N -0.317 5.317 11 C -0.048 4.048 12 C 0.161 3.839 13 H 0.024 0.976 14 C -0.190 4.190 15 C -0.575 4.575 16 H 0.085 0.915 17 C -0.187 4.187 18 N -0.560 5.560 19 Si 0.796 3.204 20 H -0.207 1.207 21 H -0.206 1.206 22 H -0.182 1.182 23 C 0.341 3.659 24 O -0.426 6.426 25 N -0.154 5.154 26 C -0.058 4.058 27 C -0.160 4.160 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.216 0.784 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.029 0.971 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.146 0.854 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.760 19.499 -1.350 33.138 hybrid contribution 1.860 -2.781 0.112 3.348 sum -24.900 16.717 -1.238 30.017 Atomic orbital electron populations 1.20690 0.81182 1.06211 1.05621 1.24519 1.03976 0.93352 1.09046 1.83978 0.82196 1.00473 1.71150 1.26764 1.02421 0.86097 0.96092 1.68293 0.94528 1.34548 1.27867 1.23270 0.99241 0.86140 0.81386 1.20958 0.92012 0.96635 1.27465 1.17657 0.81273 0.81137 0.83299 1.90704 1.69041 1.54724 1.33661 1.48172 1.37271 1.37011 1.09261 1.21652 0.99790 0.96875 0.86504 1.18612 0.85255 0.84889 0.95145 0.97596 1.21891 0.98227 1.00212 0.98710 1.21552 0.93242 0.95695 1.47060 0.91460 1.25827 1.02811 0.95155 0.94901 1.70044 1.30684 1.06003 1.49234 0.85353 0.78350 0.78385 0.78303 1.20683 1.20583 1.18168 1.16947 0.84757 0.85147 0.79013 1.90875 1.83110 1.16222 1.52429 1.45055 1.08646 1.08322 1.53405 1.20004 0.79516 1.01295 1.05016 1.20945 1.02493 0.87917 1.04596 0.87737 0.87665 0.87997 0.78365 0.91157 0.90695 0.91938 0.97141 0.93100 0.90785 0.92575 0.89655 0.85432 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.05 10.02 71.24 0.71 0.67 16 2 C -0.19 -1.88 6.42 25.61 0.16 -1.72 16 3 S 0.37 3.82 23.13 -56.49 -1.31 2.51 16 4 C 0.25 5.60 8.07 179.29 1.45 7.05 16 5 N -0.52 -13.61 10.39 -196.85 -2.04 -15.65 16 6 C 0.26 7.85 10.81 85.15 0.92 8.77 16 7 C -0.35 -14.14 3.85 -19.88 -0.08 -14.21 16 8 C 0.58 29.41 6.69 86.47 0.58 29.98 16 9 O -0.60 -36.55 16.45 -4.33 -0.07 -36.62 16 10 N -0.59 -28.91 2.75 -831.43 -2.29 -31.20 16 11 C 0.09 3.54 9.33 127.77 1.19 4.73 16 12 C 0.26 15.06 2.63 44.25 0.12 15.17 16 13 H 0.01 0.41 6.91 -2.39 -0.02 0.40 16 14 C -0.13 -7.07 8.95 71.98 0.64 -6.42 16 15 C -0.54 -30.65 8.37 25.60 0.21 -30.43 16 16 H 0.07 3.65 7.65 -2.91 -0.02 3.63 16 17 C 0.01 0.70 5.30 84.65 0.45 1.15 16 18 N -0.92 -55.43 11.32 21.45 0.24 -55.19 16 19 Si 0.97 44.22 29.54 68.60 2.03 46.24 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 22 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 23 C 0.54 20.72 7.54 84.73 0.64 21.36 16 24 O -0.55 -24.86 14.29 -4.92 -0.07 -24.93 16 25 N -0.45 -12.28 2.82 -470.06 -1.32 -13.60 16 26 C 0.05 0.92 6.62 41.63 0.28 1.19 16 27 C -0.10 -1.83 9.15 71.24 0.65 -1.18 16 28 H 0.10 -0.16 8.14 -2.38 -0.02 -0.18 16 29 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 30 H 0.10 -0.10 6.57 -2.39 -0.02 -0.12 16 31 H 0.20 5.26 8.06 -2.91 -0.02 5.23 16 32 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.07 2.79 6.43 -2.39 -0.02 2.77 16 34 H 0.06 2.10 6.84 -2.38 -0.02 2.08 16 35 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.05 2.45 6.66 -2.39 -0.02 2.43 16 37 H 0.07 4.27 6.07 -2.39 -0.01 4.26 16 38 H 0.27 15.03 8.31 -92.70 -0.77 14.26 16 39 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.13 1.10 6.52 -2.38 -0.02 1.08 16 41 H 0.06 1.71 5.95 -2.39 -0.01 1.70 16 Total: -1.00 -89.05 352.40 4.18 -84.87 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 1.08 Total: 7.45 kcal Atomic # 6 Polarization: 28.19 SS G_CDS: 7.93 Total: 36.12 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -5.41 Total: -115.65 kcal Atomic # 8 Polarization: -61.41 SS G_CDS: -0.14 Total: -61.55 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -1.31 Total: 2.51 kcal Total: -89.05 4.18 -84.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180381458.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.714 kcal (2) G-P(sol) polarization free energy of solvation -89.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds