Wall clock time and date at job start Tue Mar 31 2020 18:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09006 * 109.46852 * 54.99821 * 3 2 1 5 5 C 1.50694 * 109.47240 * 174.99849 * 3 2 1 6 6 H 1.08005 * 119.99762 * 120.00086 * 5 3 2 7 7 C 1.37874 * 120.00333 * 299.99954 * 5 3 2 8 8 N 1.31517 * 120.00041 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00262 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47017 * 90.00128 * 9 7 5 11 11 H 1.48493 * 109.47362 * 210.00130 * 9 7 5 12 12 H 1.48506 * 109.46886 * 330.00617 * 9 7 5 13 13 N 1.46503 * 109.47110 * 295.00414 * 3 2 1 14 14 C 1.34774 * 119.99968 * 84.99657 * 13 3 2 15 15 O 1.21686 * 120.00427 * 355.83436 * 14 13 3 16 16 C 1.46754 * 119.99801 * 176.10709 * 14 13 3 17 17 C 1.39970 * 120.85986 * 185.13136 * 16 14 13 18 18 N 1.31623 * 119.28941 * 179.76573 * 17 16 14 19 19 C 1.33680 * 122.37355 * 0.52957 * 18 17 16 20 20 S 1.71458 * 128.66009 * 179.69837 * 19 18 17 21 21 C 1.75591 * 91.30368 * 180.02562 * 20 19 18 22 22 C 1.50697 * 125.25300 * 180.02562 * 21 20 19 23 23 C 1.31036 * 109.49584 * 0.02562 * 21 20 19 24 24 C 1.50699 * 122.31332 * 179.97438 * 23 21 20 25 25 N 1.35123 * 121.39484 * 359.72906 * 19 18 17 26 26 C 1.36389 * 119.26420 * 359.97438 * 25 19 18 27 27 O 1.21882 * 120.29812 * 179.97438 * 26 25 19 28 28 H 1.09003 * 109.46697 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46657 * 299.99851 * 1 2 3 30 30 H 1.08995 * 109.47012 * 59.99887 * 1 2 3 31 31 H 1.09003 * 109.47247 * 239.99931 * 2 1 3 32 32 H 1.09004 * 109.47171 * 120.00210 * 2 1 3 33 33 H 0.97000 * 120.00268 * 179.97438 * 8 7 5 34 34 H 0.96996 * 119.99496 * 264.99631 * 13 3 2 35 35 H 1.07996 * 120.35575 * 359.97438 * 17 16 14 36 36 H 1.09007 * 109.47295 * 269.97749 * 22 21 20 37 37 H 1.08997 * 109.47385 * 29.97435 * 22 21 20 38 38 H 1.08998 * 109.47205 * 149.98156 * 22 21 20 39 39 H 1.08996 * 109.47576 * 270.02796 * 24 23 21 40 40 H 1.09004 * 109.46861 * 30.02928 * 24 23 21 41 41 H 1.08999 * 109.47021 * 150.02023 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4063 0.3365 2.1729 9 14 6.0051 0.8799 1.3812 10 1 6.4429 2.1128 2.0837 11 1 6.4391 -0.3111 2.1545 12 1 6.6132 0.8395 0.0269 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6644 -1.3669 15 8 -0.3698 2.5667 -0.4595 16 6 0.0783 3.3944 -2.5889 17 6 -1.1382 4.0798 -2.6864 18 7 -1.4248 4.7283 -3.7953 19 6 -0.5982 4.7505 -4.8456 20 16 -0.8090 5.5294 -6.3584 21 6 0.7487 4.9461 -6.9211 22 6 1.3443 5.2262 -8.2768 23 6 1.3133 4.2298 -5.9803 24 6 2.6644 3.5867 -6.1589 25 7 0.5892 4.1059 -4.8206 26 6 0.9513 3.4188 -3.6995 27 8 2.0177 2.8303 -3.6566 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8294 -0.0619 2.9495 34 1 2.2720 2.1231 -1.9977 35 1 -1.8327 4.0794 -1.8593 36 1 1.0373 4.4486 -8.9763 37 1 0.9949 6.1948 -8.6341 38 1 2.4316 5.2376 -8.2006 39 1 2.5390 2.5870 -6.5748 40 1 3.2670 4.1898 -6.8381 41 1 3.1647 3.5183 -5.1929 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183788803.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:00 Heat of formation + Delta-G solvation = -19.278512 kcal Electronic energy + Delta-G solvation = -26918.035779 eV Core-core repulsion = 23117.665842 eV Total energy + Delta-G solvation = -3800.369937 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.81969 -40.78540 -39.20371 -38.75799 -36.85977 -34.62521 -34.22636 -32.96372 -32.03541 -30.69733 -29.11898 -28.29138 -27.06603 -25.01883 -24.42163 -23.08088 -21.57913 -21.04436 -20.30830 -19.60357 -19.24872 -18.33949 -18.22767 -17.43593 -17.14945 -16.43364 -16.27621 -16.09642 -15.28819 -15.13807 -15.00661 -14.90532 -14.66584 -14.60994 -14.31925 -14.14872 -13.79739 -13.70460 -13.52608 -13.20378 -12.99262 -12.92880 -12.88565 -12.70817 -12.24421 -12.20278 -12.11654 -11.71359 -11.60388 -11.31634 -11.10467 -11.03319 -10.74584 -10.55036 -10.49543 -9.58254 -8.86043 -8.18248 -6.35716 -1.35147 -0.62656 -0.00960 0.15748 0.58947 0.85006 1.39408 1.41288 1.52460 1.63689 2.34912 2.57786 2.65982 2.82262 2.95100 3.09637 3.64307 3.70827 3.86198 3.97499 4.21543 4.32899 4.47377 4.52062 4.56789 4.63792 4.73542 4.76246 4.79460 4.85277 4.97751 5.05978 5.20890 5.23552 5.33768 5.44470 5.53760 5.62782 5.78894 5.95243 6.14879 6.16056 6.29061 6.70788 7.06845 7.30922 7.60721 8.87502 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.016762 B = 0.003432 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.015574 B = 8157.637198 C = 9386.839934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.119 4.119 3 C 0.277 3.723 4 H 0.001 0.999 5 C -0.553 4.553 6 H 0.057 0.943 7 C 0.018 3.982 8 N -0.912 5.912 9 Si 0.972 3.028 10 H -0.274 1.274 11 H -0.275 1.275 12 H -0.267 1.267 13 N -0.702 5.702 14 C 0.566 3.434 15 O -0.587 6.587 16 C -0.375 4.375 17 C 0.281 3.719 18 N -0.532 5.532 19 C 0.249 3.751 20 S 0.373 5.627 21 C -0.193 4.193 22 C -0.079 4.079 23 C 0.052 3.948 24 C -0.103 4.103 25 N -0.447 5.447 26 C 0.536 3.464 27 O -0.532 6.532 28 H 0.046 0.954 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.029 0.971 32 H 0.077 0.923 33 H 0.267 0.733 34 H 0.404 0.596 35 H 0.200 0.800 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.125 0.875 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.692 13.320 -28.146 31.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.158 4.158 3 C 0.173 3.827 4 H 0.019 0.981 5 C -0.591 4.591 6 H 0.075 0.925 7 C -0.183 4.183 8 N -0.550 5.550 9 Si 0.796 3.204 10 H -0.200 1.200 11 H -0.201 1.201 12 H -0.191 1.191 13 N -0.357 5.357 14 C 0.354 3.646 15 O -0.471 6.471 16 C -0.390 4.390 17 C 0.122 3.878 18 N -0.260 5.260 19 C -0.111 4.111 20 S 0.629 5.371 21 C -0.312 4.312 22 C -0.137 4.137 23 C -0.054 4.054 24 C -0.161 4.161 25 N -0.153 5.153 26 C 0.340 3.660 27 O -0.411 6.411 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.247 0.753 35 H 0.217 0.783 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.108 0.892 40 H 0.143 0.857 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.191 13.953 -27.937 32.284 hybrid contribution 2.703 -1.602 1.572 3.513 sum -5.488 12.351 -26.365 29.627 Atomic orbital electron populations 1.21676 0.96538 0.99033 1.00518 1.21765 0.94199 0.98988 1.00815 1.18417 0.93615 0.89400 0.81237 0.98124 1.21511 0.91563 1.39360 1.06634 0.92517 1.25775 1.03654 0.94104 0.94727 1.70039 1.37074 1.38088 1.09756 0.85350 0.78725 0.77886 0.78400 1.19981 1.20054 1.19121 1.46817 1.15777 1.54932 1.18213 1.17515 0.82424 0.78829 0.85869 1.90711 1.50603 1.63668 1.42158 1.21323 1.01512 1.18824 0.97376 1.23373 0.91022 0.80471 0.92897 1.68377 1.29531 1.28156 0.99925 1.26854 0.84553 0.94981 1.04700 1.84012 1.14154 1.46198 0.92713 1.24538 0.99574 1.04082 1.03043 1.20688 1.02128 1.04906 0.86004 1.20050 0.98539 1.02801 0.84034 1.20980 0.88631 1.01567 1.04949 1.45079 1.16462 1.38887 1.14876 1.17280 0.87531 0.79532 0.81652 1.90638 1.24555 1.45514 1.80365 0.93515 0.94833 0.94151 0.95217 0.90514 0.92364 0.75323 0.78303 0.87628 0.87794 0.88017 0.89211 0.85728 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.07 8.47 71.98 0.61 -5.46 16 2 C -0.12 -6.62 5.45 30.60 0.17 -6.45 16 3 C 0.28 16.30 2.24 44.24 0.10 16.40 16 4 H 0.00 0.06 7.64 -2.38 -0.02 0.04 16 5 C -0.55 -33.23 8.73 25.60 0.22 -33.00 16 6 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 7 C 0.02 1.02 5.29 84.65 0.45 1.47 16 8 N -0.91 -55.20 11.29 21.45 0.24 -54.96 16 9 Si 0.97 45.38 29.54 68.60 2.03 47.40 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 13 N -0.70 -36.89 4.93 -450.00 -2.22 -39.11 16 14 C 0.57 27.54 6.45 86.47 0.56 28.10 16 15 O -0.59 -30.80 13.24 -4.30 -0.06 -30.85 16 16 C -0.37 -14.56 5.91 -19.88 -0.12 -14.68 16 17 C 0.28 8.79 10.85 85.14 0.92 9.72 16 18 N -0.53 -13.90 10.39 -196.86 -2.04 -15.95 16 19 C 0.25 5.53 8.07 179.29 1.45 6.98 16 20 S 0.37 3.72 23.13 -56.49 -1.31 2.42 16 21 C -0.19 -1.79 6.42 25.61 0.16 -1.63 16 22 C -0.08 -0.02 10.02 71.23 0.71 0.69 16 23 C 0.05 0.93 6.62 41.63 0.28 1.21 16 24 C -0.10 -1.72 9.15 71.24 0.65 -1.07 16 25 N -0.45 -11.63 2.82 -470.06 -1.32 -12.96 16 26 C 0.54 19.28 7.54 84.73 0.64 19.92 16 27 O -0.53 -21.54 11.46 -4.93 -0.06 -21.60 16 28 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.03 1.76 7.80 -2.39 -0.02 1.74 16 30 H 0.04 2.02 5.55 -2.39 -0.01 2.01 16 31 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 4.60 5.95 -2.38 -0.01 4.59 16 33 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 34 H 0.40 20.75 5.17 -92.72 -0.48 20.27 16 35 H 0.20 5.72 7.72 -2.91 -0.02 5.70 16 36 H 0.11 -0.22 8.14 -2.38 -0.02 -0.24 16 37 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 38 H 0.10 -0.11 6.57 -2.39 -0.02 -0.13 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.12 1.02 6.52 -2.39 -0.02 1.00 16 41 H 0.07 1.72 5.95 -2.39 -0.01 1.71 16 Total: -1.00 -81.81 344.96 2.68 -79.13 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.62 Total: 24.30 kcal Atomic # 6 Polarization: 15.38 SS G_CDS: 6.80 Total: 22.18 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -5.35 Total: -122.97 kcal Atomic # 8 Polarization: -52.34 SS G_CDS: -0.11 Total: -52.45 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -1.31 Total: 2.42 kcal Total: -81.81 2.68 -79.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183788803.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.853 kcal (2) G-P(sol) polarization free energy of solvation -81.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds