Wall clock time and date at job start Tue Mar 31 2020 18:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53001 * 109.47065 * 2 1 4 4 H 1.09002 * 109.46814 * 54.99900 * 3 2 1 5 5 C 1.50697 * 109.47272 * 174.99910 * 3 2 1 6 6 H 1.08002 * 119.99963 * 120.00672 * 5 3 2 7 7 C 1.37876 * 120.00011 * 299.99926 * 5 3 2 8 8 N 1.31519 * 119.99934 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00127 * 0.02562 * 7 5 3 10 10 H 1.48503 * 109.47143 * 89.99566 * 9 7 5 11 11 H 1.48496 * 109.47144 * 209.99843 * 9 7 5 12 12 H 1.48497 * 109.47049 * 329.99911 * 9 7 5 13 13 N 1.46505 * 109.47401 * 294.99961 * 3 2 1 14 14 C 1.34776 * 119.99708 * 84.99541 * 13 3 2 15 15 O 1.21283 * 120.00289 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00042 * 180.02562 * 14 13 3 17 17 C 1.52997 * 109.47343 * 180.02562 * 16 14 13 18 18 N 1.46503 * 109.47007 * 180.02562 * 17 16 14 19 19 C 1.35798 * 119.81083 * 270.01728 * 18 17 16 20 20 N 1.29990 * 121.86016 * 179.42631 * 19 18 17 21 21 C 1.35025 * 121.70418 * 0.87165 * 20 19 18 22 22 S 1.75871 * 130.82100 * 179.10270 * 21 20 19 23 23 C 1.75344 * 92.15792 * 179.97438 * 22 21 20 24 24 C 1.32031 * 111.25446 * 359.97438 * 23 22 21 25 25 C 1.39199 * 119.55545 * 359.39106 * 21 20 19 26 26 C 1.34741 * 119.81647 * 90.00158 * 18 17 16 27 27 O 1.21895 * 120.64900 * 0.03617 * 26 18 17 28 28 H 1.08996 * 109.47738 * 299.99729 * 1 2 3 29 29 H 1.09004 * 109.47554 * 60.00467 * 1 2 3 30 30 H 1.09000 * 109.46785 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47437 * 240.00610 * 2 1 3 32 32 H 1.08998 * 109.47324 * 120.00189 * 2 1 3 33 33 H 0.97002 * 120.00126 * 180.02562 * 8 7 5 34 34 H 0.96997 * 120.00098 * 265.00068 * 13 3 2 35 35 H 1.09006 * 109.47122 * 59.99777 * 16 14 13 36 36 H 1.09000 * 109.46712 * 300.00391 * 16 14 13 37 37 H 1.08996 * 109.47290 * 60.00180 * 17 16 14 38 38 H 1.09000 * 109.47279 * 299.99729 * 17 16 14 39 39 H 1.07992 * 119.06702 * 359.97438 * 19 18 17 40 40 H 1.07998 * 124.37379 * 179.97438 * 23 22 21 41 41 H 1.08002 * 122.59670 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8891 -0.6522 7 6 4.1431 0.8785 1.2280 8 7 5.4539 0.8797 1.3358 9 14 3.0963 0.1089 2.5701 10 1 2.8755 -1.3272 2.2633 11 1 3.7935 0.2348 3.8751 12 1 1.7876 0.8073 2.6387 13 7 1.6524 2.0976 -1.2518 14 6 0.4350 2.6644 -1.3670 15 8 -0.3394 2.6326 -0.4341 16 6 0.0361 3.3377 -2.6548 17 6 -1.3827 3.8945 -2.5210 18 7 -1.7706 4.5486 -3.7732 19 6 -1.5115 5.8694 -3.9535 20 7 -1.8284 6.4870 -5.0525 21 6 -2.4491 5.8520 -6.0697 22 16 -2.9995 6.4461 -7.6308 23 6 -3.6101 4.8680 -8.0905 24 6 -3.4070 3.9794 -7.1353 25 6 -2.7501 4.4980 -5.9522 26 6 -2.3822 3.8362 -4.7396 27 8 -2.6176 2.6505 -4.5830 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.8770 0.4813 2.1125 34 1 2.2718 2.1233 -1.9978 35 1 0.0672 2.6130 -3.4685 36 1 0.7275 4.1530 -2.8678 37 1 -1.4133 4.6193 -1.7075 38 1 -2.0743 3.0795 -2.3078 39 1 -1.0205 6.4201 -3.1649 40 1 -4.0902 4.6508 -9.0332 41 1 -3.7123 2.9474 -7.2262 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183954282.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:06 Heat of formation + Delta-G solvation = -11.042175 kcal Electronic energy + Delta-G solvation = -25911.930864 eV Core-core repulsion = 22111.918081 eV Total energy + Delta-G solvation = -3800.012782 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.01169 -39.42489 -37.92237 -37.22871 -35.53973 -34.57780 -32.51100 -31.89188 -30.85842 -29.81523 -27.66300 -26.08007 -24.69998 -23.67128 -22.63059 -21.49724 -20.65769 -19.66971 -19.47065 -18.16437 -17.72038 -16.80800 -16.47509 -16.38041 -15.82801 -15.55036 -15.38910 -15.14160 -14.46858 -14.30348 -14.03370 -13.76725 -13.66259 -13.40778 -13.20128 -13.06938 -12.83840 -12.36628 -12.20630 -11.96364 -11.82705 -11.52531 -11.37452 -11.09717 -10.94282 -10.67067 -10.55485 -10.41966 -10.27740 -9.96824 -9.62914 -9.29428 -9.22604 -8.94998 -8.80233 -8.45654 -8.15488 -6.25435 -4.28439 -0.10829 0.76342 1.33349 1.48494 1.76951 2.08112 3.08443 3.18214 3.20784 3.32526 3.36702 3.72468 3.82754 4.06777 4.27518 4.38835 4.58741 4.64098 4.65234 4.82383 5.08050 5.13289 5.25724 5.35943 5.49493 5.59024 5.66202 5.77033 5.91879 5.93828 6.00246 6.15016 6.20041 6.62177 6.66629 6.79989 6.91629 7.18998 7.24330 7.24821 7.45429 7.49379 8.06653 8.44730 8.69415 8.82607 9.35047 10.86533 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.028541 B = 0.002294 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.800889 B =12201.156500 C =12540.336056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.243 3.757 4 H 0.050 0.950 5 C -0.537 4.537 6 H 0.080 0.920 7 C 0.079 3.921 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.260 1.260 13 N -0.697 5.697 14 C 0.510 3.490 15 O -0.551 6.551 16 C -0.159 4.159 17 C 0.110 3.890 18 N -0.531 5.531 19 C 0.393 3.607 20 N -0.510 5.510 21 C 0.080 3.920 22 S 0.188 5.812 23 C -0.232 4.232 24 C -0.063 4.063 25 C -0.238 4.238 26 C 0.555 3.445 27 O -0.515 6.515 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.031 0.969 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.268 0.732 34 H 0.396 0.604 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.215 0.785 40 H 0.177 0.823 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.285 11.373 -16.832 26.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.068 0.932 5 C -0.575 4.575 6 H 0.098 0.902 7 C -0.125 4.125 8 N -0.528 5.528 9 Si 0.713 3.287 10 H -0.202 1.202 11 H -0.222 1.222 12 H -0.184 1.184 13 N -0.345 5.345 14 C 0.294 3.706 15 O -0.430 6.430 16 C -0.201 4.201 17 C -0.012 4.012 18 N -0.251 5.251 19 C 0.103 3.897 20 N -0.232 5.232 21 C -0.153 4.153 22 S 0.450 5.550 23 C -0.367 4.367 24 C -0.092 4.092 25 C -0.256 4.256 26 C 0.349 3.651 27 O -0.391 6.391 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.229 0.771 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.127 0.873 38 H 0.130 0.870 39 H 0.231 0.769 40 H 0.194 0.806 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -16.718 12.675 -16.994 26.999 hybrid contribution -0.131 -2.659 1.087 2.876 sum -16.849 10.016 -15.907 25.244 Atomic orbital electron populations 1.21871 0.96861 0.99159 1.02204 1.22293 0.94415 0.99937 1.01158 1.19173 0.95657 0.88536 0.82710 0.93193 1.21038 0.88579 1.39973 1.07866 0.90208 1.24839 0.94873 0.95100 0.97700 1.69867 1.08697 1.44391 1.29851 0.86897 0.80925 0.80008 0.80869 1.20238 1.22155 1.18438 1.46169 1.14707 1.55505 1.18092 1.20000 0.82757 0.79376 0.88475 1.90694 1.51371 1.60321 1.40623 1.21990 0.96821 1.02404 0.98851 1.21815 0.96808 1.00288 0.82299 1.46788 1.49455 1.10531 1.18340 1.25106 0.88980 0.81031 0.94601 1.67952 1.19841 1.35484 0.99963 1.24024 0.98706 0.93283 0.99250 1.84119 1.56080 1.09594 1.05182 1.25182 1.10363 0.96329 1.04808 1.20505 0.97436 1.01122 0.90153 1.20841 1.12415 0.94058 0.98276 1.16684 0.78523 0.86904 0.82956 1.90952 1.54310 1.14037 1.79779 0.92849 0.92945 0.94939 0.92300 0.92747 0.92237 0.77089 0.88509 0.88533 0.87274 0.86981 0.76922 0.80614 0.83072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.51 37.15 0.32 -2.53 16 2 C -0.14 -3.03 5.11 -26.73 -0.14 -3.17 16 3 C 0.24 5.49 1.83 -69.08 -0.13 5.37 16 4 H 0.05 1.25 6.64 -51.93 -0.34 0.90 16 5 C -0.54 -14.04 9.31 -34.44 -0.32 -14.36 16 6 H 0.08 2.20 7.98 -52.49 -0.42 1.78 16 7 C 0.08 2.16 5.45 -17.82 -0.10 2.07 16 8 N -0.89 -25.96 13.96 55.43 0.77 -25.19 16 9 Si 0.88 21.35 24.41 -169.99 -4.15 17.20 16 10 H -0.28 -6.50 6.83 56.52 0.39 -6.12 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 12 H -0.26 -6.18 6.53 56.52 0.37 -5.81 16 13 N -0.70 -12.72 5.02 -54.93 -0.28 -12.99 16 14 C 0.51 8.33 6.40 -10.99 -0.07 8.26 16 15 O -0.55 -10.60 13.12 5.56 0.07 -10.53 16 16 C -0.16 -1.83 6.02 -27.89 -0.17 -1.99 16 17 C 0.11 1.16 4.65 -4.04 -0.02 1.14 16 18 N -0.53 -5.42 2.59 -120.43 -0.31 -5.73 16 19 C 0.39 3.11 11.48 -90.10 -1.03 2.08 16 20 N -0.51 -5.06 10.42 -12.60 -0.13 -5.19 16 21 C 0.08 0.85 7.70 -15.79 -0.12 0.73 16 22 S 0.19 1.48 23.24 -107.50 -2.50 -1.02 16 23 C -0.23 -1.69 11.04 28.81 0.32 -1.38 16 24 C -0.06 -0.61 10.31 -38.86 -0.40 -1.01 16 25 C -0.24 -2.79 6.08 -105.07 -0.64 -3.43 16 26 C 0.55 7.27 7.50 -14.45 -0.11 7.16 16 27 O -0.52 -8.36 16.68 5.01 0.08 -8.28 16 28 H 0.05 1.10 7.85 -51.93 -0.41 0.70 16 29 H 0.05 1.01 5.65 -51.93 -0.29 0.72 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.05 1.25 3.21 -51.93 -0.17 1.08 16 33 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.40 6.40 8.54 -40.82 -0.35 6.05 16 35 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.11 0.93 7.97 -51.93 -0.41 0.51 16 38 H 0.11 1.46 7.39 -51.93 -0.38 1.07 16 39 H 0.21 0.74 8.02 -52.49 -0.42 0.31 16 40 H 0.18 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 351.53 15.07 5.30 5.30 Total: -1.00 -33.97 351.53 -8.66 -42.63 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.92 Total: 4.86 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -2.61 Total: -1.07 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: 0.05 Total: -49.10 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.16 Total: -18.80 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.15 Total: 17.20 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.50 Total: -1.02 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.97 -8.66 -42.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183954282.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.592 kcal (2) G-P(sol) polarization free energy of solvation -33.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds