Wall clock time and date at job start Tue Mar 31 2020 18:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 C 1.53001 * 109.47399 * 180.02562 * 16 14 13 18 18 N 1.46496 * 109.47030 * 180.02562 * 17 16 14 19 19 C 1.35786 * 119.81300 * 269.72276 * 18 17 16 20 20 N 1.29984 * 121.86690 * 179.64233 * 19 18 17 21 21 C 1.35029 * 121.70239 * 0.69997 * 20 19 18 22 22 S 1.75873 * 130.81695 * 179.64026 * 21 20 19 23 23 C 1.75349 * 92.15566 * 179.97438 * 22 21 20 24 24 C 1.32028 * 111.25158 * 0.02562 * 23 22 21 25 25 C 1.39187 * 119.55846 * 359.60192 * 21 20 19 26 26 C 1.34750 * 119.81916 * 89.99983 * 18 17 16 27 27 O 1.21895 * 120.64348 * 359.97329 * 26 18 17 28 28 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 30 30 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 31 31 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 32 32 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 33 33 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 34 34 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 35 35 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 36 36 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 37 37 H 1.09007 * 109.46448 * 299.99850 * 17 16 14 38 38 H 1.08991 * 109.47125 * 59.99679 * 17 16 14 39 39 H 1.08000 * 119.06864 * 359.97438 * 19 18 17 40 40 H 1.07998 * 124.37486 * 179.97438 * 23 22 21 41 41 H 1.08002 * 122.59514 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 6 -1.3598 3.8852 2.5606 18 7 -1.7358 4.5362 3.8180 19 6 -2.3471 3.8169 4.7941 20 7 -2.6917 4.3522 5.9274 21 6 -2.4727 5.6582 6.1910 22 16 -2.8418 6.6211 7.6157 23 6 -2.1618 8.0680 6.8954 24 6 -1.7003 7.8271 5.6821 25 6 -1.8553 6.4578 5.2335 26 6 -1.4782 5.8466 3.9974 27 8 -0.9338 6.4981 3.1227 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 5.9548 0.8552 -0.5318 34 1 2.2902 2.1166 1.9978 35 1 0.0991 2.6017 3.4901 36 1 0.7539 4.1436 2.8885 37 1 -1.3986 4.6125 1.7496 38 1 -2.0528 3.0704 2.3514 39 1 -2.5480 2.7691 4.6261 40 1 -2.1259 9.0319 7.3812 41 1 -1.2424 8.5912 5.0714 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183954297.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:08 Heat of formation + Delta-G solvation = -41.836743 kcal Electronic energy + Delta-G solvation = -25884.123993 eV Core-core repulsion = 22082.775858 eV Total energy + Delta-G solvation = -3801.348135 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.84522 -40.82487 -38.85047 -38.05403 -37.08787 -35.45515 -34.47137 -33.37098 -31.98028 -30.57520 -29.16547 -26.97419 -25.51466 -24.64053 -24.06202 -22.38116 -21.88543 -21.18541 -20.22528 -19.82054 -18.99056 -18.38130 -17.44630 -17.29347 -17.04346 -16.83575 -16.62584 -16.00130 -15.68644 -15.09642 -15.05048 -14.87204 -14.74144 -14.49654 -14.46853 -14.28701 -14.02796 -13.87645 -13.75535 -13.46254 -12.98379 -12.66891 -12.46256 -12.36157 -12.22659 -12.21992 -11.77932 -11.46454 -11.37086 -11.26521 -11.11715 -11.09635 -10.71460 -10.48836 -9.79407 -9.67674 -9.19186 -8.80311 -6.45522 -0.82262 0.09203 0.47747 0.81806 1.08605 1.24016 1.44150 1.50124 1.68310 1.74972 2.32469 2.40645 2.54812 3.00734 3.08343 3.35714 3.63133 3.68234 3.78872 3.87544 4.04970 4.11296 4.35878 4.36871 4.45380 4.55112 4.60237 4.62395 4.77819 4.89514 4.91656 5.07257 5.16178 5.16717 5.26828 5.34852 5.39596 5.58257 5.66156 5.71237 5.99906 6.49517 6.51831 6.59480 6.83661 7.28229 7.43138 8.58843 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.026184 B = 0.002316 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.106876 B =12089.184610 C =12442.122029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.136 4.136 3 C 0.251 3.749 4 H 0.021 0.979 5 C -0.614 4.614 6 H 0.037 0.963 7 C -0.008 4.008 8 N -0.930 5.930 9 Si 1.072 2.928 10 H -0.285 1.285 11 H -0.239 1.239 12 H -0.277 1.277 13 N -0.704 5.704 14 C 0.509 3.491 15 O -0.576 6.576 16 C -0.144 4.144 17 C 0.117 3.883 18 N -0.527 5.527 19 C 0.399 3.601 20 N -0.520 5.520 21 C 0.064 3.936 22 S 0.229 5.771 23 C -0.213 4.213 24 C -0.092 4.092 25 C -0.267 4.267 26 C 0.543 3.457 27 O -0.565 6.565 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.257 0.743 34 H 0.402 0.598 35 H 0.135 0.865 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.141 0.859 39 H 0.265 0.735 40 H 0.210 0.790 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.320 7.707 20.359 29.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.175 4.175 3 C 0.146 3.854 4 H 0.039 0.961 5 C -0.652 4.652 6 H 0.055 0.945 7 C -0.208 4.208 8 N -0.565 5.565 9 Si 0.894 3.106 10 H -0.211 1.211 11 H -0.163 1.163 12 H -0.202 1.202 13 N -0.352 5.352 14 C 0.296 3.704 15 O -0.457 6.457 16 C -0.185 4.185 17 C -0.005 4.005 18 N -0.245 5.245 19 C 0.111 3.889 20 N -0.242 5.242 21 C -0.169 4.169 22 S 0.492 5.508 23 C -0.347 4.347 24 C -0.121 4.121 25 C -0.285 4.285 26 C 0.340 3.660 27 O -0.444 6.444 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.236 0.764 35 H 0.153 0.847 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.159 0.841 39 H 0.280 0.720 40 H 0.226 0.774 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -21.486 7.046 19.708 29.995 hybrid contribution 2.279 1.631 -0.265 2.815 sum -19.207 8.677 19.444 28.675 Atomic orbital electron populations 1.21770 0.94961 1.00515 1.01762 1.22234 0.95883 0.97896 1.01479 1.18751 0.93145 0.90009 0.83526 0.96099 1.22325 0.91875 1.47925 1.03068 0.94511 1.26844 0.97714 0.92170 1.04073 1.70978 1.08124 1.43466 1.33982 0.83721 0.75262 0.78605 0.72996 1.21072 1.16312 1.20241 1.46112 1.15703 1.56238 1.17170 1.20698 0.81704 0.78169 0.89843 1.90677 1.51526 1.60843 1.42624 1.21892 0.97834 1.02119 0.96623 1.21719 0.96412 0.99246 0.83118 1.46714 1.49501 1.10080 1.18222 1.26112 0.83038 0.99586 0.80191 1.68031 1.26985 1.09500 1.19698 1.24415 0.98444 0.94320 0.99701 1.83985 1.58605 0.97189 1.11018 1.25594 1.06362 1.04123 0.98651 1.20601 1.01139 0.93705 0.96666 1.20988 1.13515 0.97541 0.96481 1.17084 0.79616 0.81767 0.87582 1.90922 1.44664 1.63027 1.45813 0.92492 0.92327 0.94269 0.92669 0.92580 0.93378 0.76350 0.84680 0.89461 0.90116 0.84130 0.71998 0.77362 0.83448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.57 8.53 71.98 0.61 -3.95 16 2 C -0.14 -5.54 5.28 30.59 0.16 -5.38 16 3 C 0.25 11.34 1.82 44.24 0.08 11.42 16 4 H 0.02 1.05 6.26 -2.39 -0.01 1.04 16 5 C -0.61 -32.99 9.01 25.60 0.23 -32.76 16 6 H 0.04 2.10 7.96 -2.91 -0.02 2.08 16 7 C -0.01 -0.43 5.32 84.66 0.45 0.02 16 8 N -0.93 -56.29 13.69 21.45 0.29 -56.00 16 9 Si 1.07 49.90 26.27 68.60 1.80 51.71 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.24 -9.92 5.67 99.48 0.56 -9.35 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 N -0.70 -25.67 5.03 -446.11 -2.24 -27.91 16 14 C 0.51 16.22 6.42 87.66 0.56 16.78 16 15 O -0.58 -21.62 13.12 -3.03 -0.04 -21.66 16 16 C -0.14 -3.08 6.02 29.85 0.18 -2.90 16 17 C 0.12 2.31 4.65 86.38 0.40 2.71 16 18 N -0.53 -10.04 2.59 -653.07 -1.69 -11.73 16 19 C 0.40 5.02 11.48 180.17 2.07 7.08 16 20 N -0.52 -8.93 10.42 -193.78 -2.02 -10.95 16 21 C 0.06 1.26 7.70 84.43 0.65 1.91 16 22 S 0.23 3.08 23.24 -56.49 -1.31 1.77 16 23 C -0.21 -2.74 11.04 66.90 0.74 -2.00 16 24 C -0.09 -1.81 10.31 23.06 0.24 -1.57 16 25 C -0.27 -6.31 6.08 -20.16 -0.12 -6.44 16 26 C 0.54 14.69 7.51 85.43 0.64 15.33 16 27 O -0.56 -19.87 16.68 -4.98 -0.08 -19.96 16 28 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.06 1.87 5.63 -2.38 -0.01 1.86 16 30 H 0.04 1.44 7.88 -2.39 -0.02 1.42 16 31 H 0.05 2.39 4.74 -2.38 -0.01 2.38 16 32 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.26 15.60 8.73 -92.71 -0.81 14.79 16 34 H 0.40 13.19 8.53 -92.71 -0.79 12.40 16 35 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.08 2.18 7.39 -2.38 -0.02 2.16 16 38 H 0.14 1.86 7.96 -2.39 -0.02 1.85 16 39 H 0.26 0.30 8.02 -2.91 -0.02 0.28 16 40 H 0.21 1.16 8.06 -2.91 -0.02 1.14 16 41 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -78.07 353.85 1.72 -76.36 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.11 Total: 18.12 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 6.89 Total: 0.26 kcal Atomic # 7 Polarization: -100.94 SS G_CDS: -5.66 Total: -106.60 kcal Atomic # 8 Polarization: -41.49 SS G_CDS: -0.12 Total: -41.61 kcal Atomic # 14 Polarization: 49.90 SS G_CDS: 1.80 Total: 51.71 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -1.31 Total: 1.77 kcal Total: -78.07 1.72 -76.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183954297.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.523 kcal (2) G-P(sol) polarization free energy of solvation -78.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds