Wall clock time and date at job start Tue Mar 31 2020 18:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46893 * 2 1 4 4 H 1.09003 * 109.46430 * 181.22786 * 3 2 1 5 5 C 1.50697 * 109.47083 * 301.22260 * 3 2 1 6 6 H 1.07998 * 120.00003 * 114.81958 * 5 3 2 7 7 C 1.37876 * 120.00078 * 294.81505 * 5 3 2 8 8 N 1.31514 * 120.00505 * 354.25345 * 7 5 3 9 9 Si 1.86804 * 119.99842 * 174.25735 * 7 5 3 10 10 H 1.48499 * 109.46788 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.47064 * 299.99737 * 9 7 5 12 12 H 1.48498 * 109.47304 * 59.99935 * 9 7 5 13 13 N 1.46495 * 109.47514 * 61.22999 * 3 2 1 14 14 S 1.65596 * 120.00505 * 95.18421 * 13 3 2 15 15 O 1.42100 * 106.40490 * 178.53183 * 14 13 3 16 16 O 1.42103 * 106.40101 * 311.44661 * 14 13 3 17 17 C 1.76193 * 107.21930 * 64.98856 * 14 13 3 18 18 C 1.39919 * 126.03551 * 90.02234 * 17 14 13 19 19 N 1.30877 * 108.24380 * 179.97438 * 18 17 14 20 20 N 1.40084 * 108.21952 * 0.02562 * 19 18 17 21 21 C 1.40186 * 126.05159 * 180.02562 * 20 19 18 22 22 C 1.38838 * 120.06463 * 179.69225 * 21 20 19 23 23 C 1.38118 * 119.93488 * 179.74540 * 22 21 20 24 24 C 1.38278 * 120.06449 * 0.53115 * 23 22 21 25 25 C 1.38278 * 120.13455 * 359.74391 * 24 23 22 26 26 C 1.38127 * 120.06705 * 359.97438 * 25 24 23 27 27 C 1.35226 * 107.89130 * 359.76311 * 20 19 18 28 28 H 1.09007 * 109.46714 * 305.12263 * 1 2 3 29 29 H 1.08995 * 109.47058 * 65.11435 * 1 2 3 30 30 H 1.08993 * 109.47566 * 185.12067 * 1 2 3 31 31 H 1.08997 * 109.46738 * 239.99524 * 2 1 3 32 32 H 1.08996 * 109.46563 * 119.99791 * 2 1 3 33 33 H 0.97004 * 119.99247 * 355.57209 * 8 7 5 34 34 H 0.97003 * 119.99692 * 275.18452 * 13 3 2 35 35 H 1.08002 * 125.87730 * 359.95077 * 18 17 14 36 36 H 1.08003 * 120.03284 * 0.02562 * 22 21 20 37 37 H 1.08000 * 119.97478 * 180.29962 * 23 22 21 38 38 H 1.07998 * 119.93571 * 179.76665 * 24 23 22 39 39 H 1.08000 * 119.97351 * 179.97438 * 25 24 23 40 40 H 1.07995 * 120.03710 * 180.02562 * 26 25 24 41 41 H 1.08002 * 126.13919 * 180.22479 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1298 1.4425 -0.0220 5 6 1.5131 2.1616 -1.2150 6 1 0.8271 2.9876 -1.0984 7 6 1.9067 1.7650 -2.4755 8 7 2.8268 0.8358 -2.6152 9 14 1.1332 2.5478 -3.9849 10 1 1.7249 1.9520 -5.2097 11 1 -0.3316 2.3040 -3.9733 12 1 1.3918 4.0101 -3.9718 13 7 1.5761 2.1246 1.2106 14 16 2.5544 2.2011 2.5445 15 8 1.8419 2.9459 3.5226 16 8 3.0319 0.8815 2.7681 17 6 3.9587 3.1708 2.1063 18 6 4.0762 4.5583 2.2436 19 7 5.2600 4.9138 1.8134 20 7 5.9351 3.7627 1.3872 21 6 7.2323 3.7153 0.8580 22 6 7.7851 2.4993 0.4794 23 6 9.0615 2.4564 -0.0466 24 6 9.7928 3.6217 -0.1862 25 6 9.2471 4.8336 0.1952 26 6 7.9689 4.8836 0.7165 27 6 5.1159 2.7046 1.5823 28 1 -0.3633 0.5913 0.8406 29 1 -0.3633 0.4324 -0.9322 30 1 -0.3634 -1.0235 0.0917 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.2744 0.4752 -1.8338 34 1 0.6957 2.5314 1.2309 35 1 3.3200 5.2217 2.6365 36 1 7.2160 1.5884 0.5920 37 1 9.4903 1.5114 -0.3458 38 1 10.7920 3.5853 -0.5943 39 1 9.8207 5.7421 0.0854 40 1 7.5430 5.8305 1.0139 41 1 5.3436 1.6729 1.3578 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186429756.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:16 Heat of formation + Delta-G solvation = 3.836757 kcal Electronic energy + Delta-G solvation = -26849.956214 eV Core-core repulsion = 23050.588631 eV Total energy + Delta-G solvation = -3799.367583 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.84959 -40.03141 -38.44244 -37.90708 -36.89074 -34.78208 -34.14465 -32.46855 -32.13605 -31.51988 -30.22146 -27.75067 -25.61859 -24.98625 -24.33148 -22.41118 -22.07494 -21.89780 -20.42569 -19.55395 -19.36392 -18.40015 -17.70041 -17.04940 -16.72738 -16.60811 -16.43736 -15.74710 -15.58016 -15.46004 -15.12722 -15.03792 -14.80361 -14.67372 -14.44512 -14.17206 -13.94139 -13.26400 -13.24292 -13.11248 -13.09155 -12.82491 -12.71643 -12.63194 -12.27692 -12.16673 -12.05001 -11.95195 -11.83958 -11.68775 -11.66412 -10.85065 -10.75545 -10.42935 -10.13127 -10.04050 -9.40709 -8.51791 -6.24959 -0.53563 -0.39022 0.22676 0.80058 1.05829 1.11373 1.57787 1.62374 1.80726 2.24161 2.60587 2.67429 2.81968 2.98933 3.24674 3.40139 3.54152 3.78172 3.81390 4.04490 4.13003 4.25887 4.30510 4.32601 4.43084 4.50396 4.52481 4.65413 4.76106 4.91774 5.01467 5.12372 5.22876 5.28351 5.29784 5.40615 5.41325 5.57824 5.58706 5.63618 5.92320 5.95394 6.14308 6.25765 6.44655 6.66909 7.48943 8.84848 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.009821 B = 0.004745 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.387295 B = 5900.088538 C = 7532.329271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.138 4.138 3 C 0.274 3.726 4 H 0.015 0.985 5 C -0.596 4.596 6 H 0.058 0.942 7 C -0.016 4.016 8 N -0.931 5.931 9 Si 1.101 2.899 10 H -0.290 1.290 11 H -0.270 1.270 12 H -0.280 1.280 13 N -1.093 6.093 14 S 2.744 3.256 15 O -0.986 6.986 16 O -0.989 6.989 17 C -0.811 4.811 18 C 0.137 3.863 19 N -0.306 5.306 20 N -0.312 5.312 21 C 0.109 3.891 22 C -0.150 4.150 23 C -0.092 4.092 24 C -0.116 4.116 25 C -0.096 4.096 26 C -0.129 4.129 27 C 0.173 3.827 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.263 0.737 34 H 0.419 0.581 35 H 0.228 0.772 36 H 0.135 0.865 37 H 0.163 0.837 38 H 0.166 0.834 39 H 0.162 0.838 40 H 0.130 0.870 41 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.043 5.040 5.312 13.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.178 4.178 3 C 0.168 3.832 4 H 0.033 0.967 5 C -0.636 4.636 6 H 0.076 0.924 7 C -0.217 4.217 8 N -0.569 5.569 9 Si 0.925 3.075 10 H -0.215 1.215 11 H -0.195 1.195 12 H -0.206 1.206 13 N -0.853 5.853 14 S 2.831 3.169 15 O -0.976 6.976 16 O -0.979 6.979 17 C -0.909 4.909 18 C -0.052 4.052 19 N -0.124 5.124 20 N -0.082 5.082 21 C 0.019 3.981 22 C -0.170 4.170 23 C -0.111 4.111 24 C -0.134 4.134 25 C -0.114 4.114 26 C -0.149 4.149 27 C 0.023 3.977 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.254 0.746 35 H 0.244 0.756 36 H 0.153 0.847 37 H 0.180 0.820 38 H 0.184 0.816 39 H 0.180 0.820 40 H 0.148 0.852 41 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 11.973 5.539 4.237 13.856 hybrid contribution -0.679 -0.132 1.334 1.503 sum 11.293 5.407 5.571 13.704 Atomic orbital electron populations 1.21467 0.95082 1.00050 1.01535 1.21978 0.97840 0.98286 0.99674 1.18343 0.92956 0.89376 0.82571 0.96740 1.22263 1.30530 1.18561 0.92216 0.92390 1.26756 0.95766 0.95642 1.03505 1.70903 1.24403 1.27695 1.33886 0.83111 0.76147 0.75234 0.73006 1.21543 1.19473 1.20634 1.55231 1.29251 1.70736 1.30076 1.00111 0.72247 0.72643 0.71887 1.93498 1.72207 1.73711 1.58195 1.93514 1.82243 1.37239 1.84894 1.31752 1.20009 1.09188 1.29905 1.24099 0.94833 0.92704 0.93606 1.77340 1.08127 1.06449 1.20459 1.46506 1.11785 1.05114 1.44844 1.18131 0.81369 0.97175 1.01474 1.21214 0.98247 0.95500 1.02080 1.21423 0.92124 1.00937 0.96578 1.21748 1.01624 0.91540 0.98446 1.21470 0.93346 1.00238 0.96370 1.21080 0.95771 0.96539 1.01485 1.22807 0.88456 0.95491 0.90995 0.92739 0.93344 0.93369 0.93181 0.93596 0.92672 0.74598 0.75602 0.84727 0.81975 0.81622 0.82014 0.85169 0.77774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.85 9.47 71.98 0.68 -4.16 16 2 C -0.14 -6.07 5.59 30.60 0.17 -5.90 16 3 C 0.27 12.33 2.09 44.25 0.09 12.42 16 4 H 0.01 0.71 7.00 -2.39 -0.02 0.69 16 5 C -0.60 -29.57 7.47 25.60 0.19 -29.38 16 6 H 0.06 2.83 7.82 -2.91 -0.02 2.80 16 7 C -0.02 -0.85 5.26 84.65 0.45 -0.40 16 8 N -0.93 -51.64 12.90 21.45 0.28 -51.36 16 9 Si 1.10 47.20 29.91 68.60 2.05 49.25 16 10 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 11 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 12 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 13 N -1.09 -41.63 4.80 -172.53 -0.83 -42.46 16 14 S 2.74 99.33 5.79 -56.49 -0.33 99.00 16 15 O -0.99 -36.98 17.87 -128.00 -2.29 -39.27 16 16 O -0.99 -39.84 17.11 -128.00 -2.19 -42.03 16 17 C -0.81 -28.28 6.00 22.00 0.13 -28.15 16 18 C 0.14 4.47 11.82 85.24 1.01 5.47 16 19 N -0.31 -10.50 11.87 -56.97 -0.68 -11.18 16 20 N -0.31 -10.48 3.80 -187.76 -0.71 -11.19 16 21 C 0.11 3.16 6.69 38.09 0.25 3.42 16 22 C -0.15 -3.65 9.46 22.38 0.21 -3.44 16 23 C -0.09 -1.63 10.04 22.25 0.22 -1.41 16 24 C -0.12 -1.71 10.04 22.29 0.22 -1.49 16 25 C -0.10 -1.66 10.04 22.25 0.22 -1.43 16 26 C -0.13 -3.19 9.66 22.39 0.22 -2.98 16 27 C 0.17 5.89 10.31 83.50 0.86 6.75 16 28 H 0.05 1.93 7.25 -2.38 -0.02 1.91 16 29 H 0.05 2.02 7.37 -2.39 -0.02 2.00 16 30 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.05 2.42 6.27 -2.39 -0.01 2.40 16 32 H 0.05 1.95 7.64 -2.39 -0.02 1.93 16 33 H 0.26 14.51 6.03 -92.71 -0.56 13.95 16 34 H 0.42 14.49 8.48 -96.75 -0.82 13.67 16 35 H 0.23 5.76 8.06 -2.91 -0.02 5.74 16 36 H 0.13 3.10 6.74 -2.91 -0.02 3.08 16 37 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 38 H 0.17 1.26 8.06 -2.91 -0.02 1.24 16 39 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 40 H 0.13 3.31 7.70 -2.91 -0.02 3.29 16 41 H 0.21 6.11 7.04 -2.91 -0.02 6.09 16 Total: -1.00 -69.40 359.02 0.70 -68.70 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 0.46 Total: 31.21 kcal Atomic # 6 Polarization: -55.61 SS G_CDS: 4.94 Total: -50.67 kcal Atomic # 7 Polarization: -114.25 SS G_CDS: -1.94 Total: -116.19 kcal Atomic # 8 Polarization: -76.82 SS G_CDS: -4.48 Total: -81.30 kcal Atomic # 14 Polarization: 47.20 SS G_CDS: 2.05 Total: 49.25 kcal Atomic # 16 Polarization: 99.33 SS G_CDS: -0.33 Total: 99.00 kcal Total: -69.40 0.70 -68.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186429756.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.538 kcal (2) G-P(sol) polarization free energy of solvation -69.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds