Wall clock time and date at job start Tue Mar 31 2020 18:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47201 * 2 1 4 4 H 1.09008 * 109.47230 * 303.39207 * 3 2 1 5 5 C 1.50699 * 109.47465 * 183.38981 * 3 2 1 6 6 H 1.08001 * 120.00450 * 240.00308 * 5 3 2 7 7 C 1.37884 * 119.99732 * 59.99798 * 5 3 2 8 8 N 1.31513 * 119.99955 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99832 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47087 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47215 * 120.00002 * 9 7 5 12 12 H 1.48511 * 109.47011 * 240.00052 * 9 7 5 13 13 N 1.46501 * 109.47139 * 63.38931 * 3 2 1 14 14 S 1.65601 * 120.00019 * 215.83740 * 13 3 2 15 15 O 1.42101 * 106.40033 * 178.94132 * 14 13 3 16 16 O 1.42103 * 106.40140 * 311.85971 * 14 13 3 17 17 C 1.76201 * 107.21918 * 65.40130 * 14 13 3 18 18 C 1.39920 * 126.03183 * 93.95888 * 17 14 13 19 19 N 1.30878 * 108.24402 * 179.97438 * 18 17 14 20 20 N 1.40089 * 108.21431 * 359.97438 * 19 18 17 21 21 C 1.40185 * 126.04896 * 180.02562 * 20 19 18 22 22 C 1.38842 * 120.06434 * 179.70370 * 21 20 19 23 23 C 1.38121 * 119.93261 * 179.74908 * 22 21 20 24 24 C 1.38277 * 120.06542 * 0.52393 * 23 22 21 25 25 C 1.38280 * 120.13252 * 359.74761 * 24 23 22 26 26 C 1.38121 * 120.07180 * 359.97438 * 25 24 23 27 27 C 1.35220 * 107.89417 * 359.77477 * 20 19 18 28 28 H 1.08995 * 109.47221 * 294.89755 * 1 2 3 29 29 H 1.08996 * 109.46927 * 174.89277 * 1 2 3 30 30 H 1.08998 * 109.46632 * 54.89409 * 1 2 3 31 31 H 1.09003 * 109.46698 * 119.99603 * 2 1 3 32 32 H 1.09000 * 109.47373 * 239.99882 * 2 1 3 33 33 H 0.96997 * 119.99760 * 179.97438 * 8 7 5 34 34 H 0.96999 * 120.00083 * 35.84110 * 13 3 2 35 35 H 1.08001 * 125.87792 * 359.94172 * 18 17 14 36 36 H 1.08000 * 120.03298 * 359.97438 * 22 21 20 37 37 H 1.07994 * 119.96545 * 180.29619 * 23 22 21 38 38 H 1.07993 * 119.93602 * 179.76980 * 24 23 22 39 39 H 1.08004 * 119.96831 * 179.97438 * 25 24 23 40 40 H 1.07995 * 120.03959 * 180.02562 * 26 25 24 41 41 H 1.07998 * 126.14440 * 180.21785 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6279 1.9736 -0.8581 5 6 3.5447 1.4433 -0.0840 6 1 4.1293 1.8952 0.7037 7 6 4.1750 0.8671 -1.1665 8 7 3.4631 0.3173 -2.1259 9 14 6.0401 0.8676 -1.2703 10 1 6.6023 1.5440 -0.0739 11 1 6.5332 -0.5320 -1.3257 12 1 6.4676 1.5918 -2.4944 13 7 1.6195 2.1091 1.2349 14 16 1.2031 3.7117 1.2103 15 8 0.8244 4.0483 2.5379 16 8 2.2360 4.3838 0.5026 17 6 -0.2510 3.8577 0.2259 18 6 -1.5683 3.8516 0.6976 19 7 -2.3712 3.9817 -0.3277 20 7 -1.5899 4.0756 -1.4866 21 6 -2.0698 4.2250 -2.7953 22 6 -1.1794 4.3117 -3.8570 23 6 -1.6554 4.4536 -5.1459 24 6 -3.0169 4.5203 -5.3781 25 6 -3.9060 4.4399 -4.3221 26 6 -3.4363 4.2922 -3.0316 27 6 -0.2907 4.0022 -1.1189 28 1 -0.3633 0.4326 0.9321 29 1 -0.3633 -1.0236 -0.0915 30 1 -0.3632 0.5910 -0.8407 31 1 1.8933 -0.5138 0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 3.9066 -0.0877 -2.8876 34 1 1.5850 1.6118 2.0670 35 1 -1.8704 3.7555 1.7300 36 1 -0.1158 4.2645 -3.6757 37 1 -0.9634 4.5163 -5.9726 38 1 -3.3866 4.6351 -6.3862 39 1 -4.9688 4.4927 -4.5065 40 1 -4.1311 4.2290 -2.2073 41 1 0.5620 4.0476 -1.7801 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186429769.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:20 Heat of formation + Delta-G solvation = 28.755713 kcal Electronic energy + Delta-G solvation = -26936.446058 eV Core-core repulsion = 23138.159041 eV Total energy + Delta-G solvation = -3798.287016 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.62650 -39.13259 -36.55150 -35.91181 -35.11614 -33.71349 -32.17836 -31.49081 -30.61622 -30.33762 -29.18321 -26.63244 -23.88874 -23.34414 -23.05823 -21.20788 -20.95343 -20.17864 -19.08299 -18.23445 -16.92853 -16.77152 -16.32261 -15.79789 -15.49673 -15.41576 -15.23842 -14.57134 -14.50660 -14.08325 -13.78953 -13.68747 -13.16627 -13.02552 -12.97120 -12.90263 -11.93285 -11.90083 -11.76576 -11.63823 -11.43409 -11.29208 -11.22928 -11.21632 -10.92883 -10.80146 -10.59698 -10.46057 -10.21431 -9.86461 -9.82206 -9.72960 -9.41156 -9.28473 -8.46000 -8.39232 -8.21971 -6.09468 -4.15305 0.58269 1.06633 1.16283 1.95579 2.23824 2.35697 3.28470 3.36791 3.43431 3.53961 3.92937 4.22397 4.38854 4.45819 4.56874 4.65218 4.74123 4.85864 5.08041 5.10651 5.14371 5.20658 5.36718 5.49948 5.72219 5.73975 6.03058 6.06864 6.07048 6.13515 6.20745 6.30013 6.39529 6.46701 6.49852 6.76306 6.90532 6.96483 7.09148 7.38497 7.55494 7.63207 7.88610 8.09562 8.22756 8.89013 9.51112 10.95019 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011112 B = 0.004439 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.191586 B = 6306.271067 C = 7606.112167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.283 3.717 4 H 0.037 0.963 5 C -0.517 4.517 6 H 0.066 0.934 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.283 1.283 13 N -1.101 6.101 14 S 2.720 3.280 15 O -0.985 6.985 16 O -0.952 6.952 17 C -0.797 4.797 18 C 0.141 3.859 19 N -0.294 5.294 20 N -0.316 5.316 21 C 0.153 3.847 22 C -0.136 4.136 23 C -0.091 4.091 24 C -0.128 4.128 25 C -0.100 4.100 26 C -0.117 4.117 27 C 0.186 3.814 28 H 0.039 0.961 29 H 0.035 0.965 30 H 0.038 0.962 31 H 0.043 0.957 32 H 0.105 0.895 33 H 0.262 0.738 34 H 0.406 0.594 35 H 0.202 0.798 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.138 0.862 41 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.936 5.437 -4.074 14.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.166 4.166 3 C 0.179 3.821 4 H 0.055 0.945 5 C -0.557 4.557 6 H 0.084 0.916 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.862 5.862 14 S 2.804 3.196 15 O -0.975 6.975 16 O -0.942 6.942 17 C -0.892 4.892 18 C -0.049 4.049 19 N -0.111 5.111 20 N -0.088 5.088 21 C 0.061 3.939 22 C -0.156 4.156 23 C -0.109 4.109 24 C -0.147 4.147 25 C -0.118 4.118 26 C -0.136 4.136 27 C 0.038 3.962 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.123 0.877 33 H 0.072 0.928 34 H 0.239 0.761 35 H 0.218 0.782 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.156 0.844 41 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -13.778 6.228 -4.512 15.779 hybrid contribution 1.233 -0.699 0.006 1.417 sum -12.545 5.529 -4.506 14.431 Atomic orbital electron populations 1.21805 0.99068 0.99424 0.99953 1.21879 0.91773 0.99523 1.03418 1.18503 0.94378 0.89852 0.79366 0.94521 1.21595 0.91148 1.36563 1.06377 0.91601 1.24892 0.98574 0.94981 0.95405 1.69849 1.35108 1.38539 1.09919 0.86462 0.85350 0.77513 0.78264 1.19564 1.21110 1.20953 1.55520 1.82052 1.30052 1.18537 1.01061 0.72741 0.73232 0.72539 1.93500 1.84625 1.83416 1.35964 1.93592 1.52920 1.72886 1.74782 1.32129 1.19660 1.30448 1.06997 1.23638 0.88886 0.93467 0.98948 1.77392 1.18403 1.25082 0.90173 1.46328 1.04556 1.52775 1.05105 1.17670 0.93960 1.02160 0.80114 1.21023 0.99933 1.02846 0.91795 1.21021 0.95873 0.98202 0.95843 1.21260 0.93303 1.00725 0.99414 1.21066 1.00184 0.98910 0.91665 1.20917 0.93109 1.01329 0.98279 1.22632 0.88071 0.90454 0.95049 0.94224 0.94596 0.94282 0.93854 0.87726 0.92824 0.76054 0.78169 0.84547 0.84679 0.85373 0.85098 0.84440 0.78695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.72 37.16 0.36 -2.28 16 2 C -0.13 -2.68 5.37 -26.73 -0.14 -2.82 16 3 C 0.28 6.36 2.17 -69.08 -0.15 6.21 16 4 H 0.04 0.86 7.45 -51.92 -0.39 0.48 16 5 C -0.52 -13.38 8.84 -34.44 -0.30 -13.68 16 6 H 0.07 1.74 7.81 -52.49 -0.41 1.33 16 7 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 8 N -0.89 -23.59 11.30 55.43 0.63 -22.97 16 9 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 13 N -1.10 -21.09 4.93 -5.88 -0.03 -21.12 16 14 S 2.72 51.07 5.79 -107.50 -0.62 50.45 16 15 O -0.98 -19.13 17.84 -57.17 -1.02 -20.15 16 16 O -0.95 -21.11 17.63 -57.17 -1.01 -22.12 16 17 C -0.80 -13.38 6.04 -39.99 -0.24 -13.62 16 18 C 0.14 2.15 11.78 -17.33 -0.20 1.94 16 19 N -0.29 -4.65 11.87 30.64 0.36 -4.28 16 20 N -0.32 -4.93 3.80 -10.70 -0.04 -4.97 16 21 C 0.15 2.09 6.69 -83.59 -0.56 1.53 16 22 C -0.14 -1.63 9.46 -39.40 -0.37 -2.00 16 23 C -0.09 -0.88 10.04 -39.61 -0.40 -1.28 16 24 C -0.13 -1.12 10.04 -39.55 -0.40 -1.51 16 25 C -0.10 -0.92 10.04 -39.61 -0.40 -1.32 16 26 C -0.12 -1.38 9.66 -39.40 -0.38 -1.76 16 27 C 0.19 3.03 10.15 -17.10 -0.17 2.86 16 28 H 0.04 0.65 7.85 -51.93 -0.41 0.24 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.10 2.51 5.99 -51.93 -0.31 2.20 16 33 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 34 H 0.41 6.86 8.85 -34.47 -0.30 6.55 16 35 H 0.20 2.43 8.06 -52.49 -0.42 2.01 16 36 H 0.14 1.56 6.74 -52.49 -0.35 1.21 16 37 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 40 H 0.14 1.62 7.70 -52.49 -0.40 1.21 16 41 H 0.20 2.92 7.04 -52.49 -0.37 2.55 16 LS Contribution 363.70 15.07 5.48 5.48 Total: -1.00 -32.15 363.70 -9.77 -41.92 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -5.04 Total: 8.23 kcal Atomic # 6 Polarization: -22.73 SS G_CDS: -3.46 Total: -26.19 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: 0.92 Total: -53.34 kcal Atomic # 8 Polarization: -40.24 SS G_CDS: -2.03 Total: -42.27 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 51.07 SS G_CDS: -0.62 Total: 50.45 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.15 -9.77 -41.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186429769.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.677 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds