Wall clock time and date at job start Tue Mar 31 2020 18:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47201 * 2 1 4 4 H 1.09008 * 109.47230 * 303.39207 * 3 2 1 5 5 C 1.50699 * 109.47465 * 183.38981 * 3 2 1 6 6 H 1.08001 * 120.00450 * 240.00308 * 5 3 2 7 7 C 1.37884 * 119.99732 * 59.99798 * 5 3 2 8 8 N 1.31513 * 119.99955 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 119.99832 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47087 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47215 * 120.00002 * 9 7 5 12 12 H 1.48511 * 109.47011 * 240.00052 * 9 7 5 13 13 N 1.46501 * 109.47139 * 63.38931 * 3 2 1 14 14 S 1.65601 * 120.00019 * 215.83740 * 13 3 2 15 15 O 1.42101 * 106.40033 * 178.94132 * 14 13 3 16 16 O 1.42103 * 106.40140 * 311.85971 * 14 13 3 17 17 C 1.76201 * 107.21918 * 65.40130 * 14 13 3 18 18 C 1.39920 * 126.03183 * 93.95888 * 17 14 13 19 19 N 1.30878 * 108.24402 * 179.97438 * 18 17 14 20 20 N 1.40089 * 108.21431 * 359.97438 * 19 18 17 21 21 C 1.40185 * 126.04896 * 180.02562 * 20 19 18 22 22 C 1.38842 * 120.06434 * 179.70370 * 21 20 19 23 23 C 1.38121 * 119.93261 * 179.74908 * 22 21 20 24 24 C 1.38277 * 120.06542 * 0.52393 * 23 22 21 25 25 C 1.38280 * 120.13252 * 359.74761 * 24 23 22 26 26 C 1.38121 * 120.07180 * 359.97438 * 25 24 23 27 27 C 1.35220 * 107.89417 * 359.77477 * 20 19 18 28 28 H 1.08995 * 109.47221 * 294.89755 * 1 2 3 29 29 H 1.08996 * 109.46927 * 174.89277 * 1 2 3 30 30 H 1.08998 * 109.46632 * 54.89409 * 1 2 3 31 31 H 1.09003 * 109.46698 * 119.99603 * 2 1 3 32 32 H 1.09000 * 109.47373 * 239.99882 * 2 1 3 33 33 H 0.96997 * 119.99760 * 179.97438 * 8 7 5 34 34 H 0.96999 * 120.00083 * 35.84110 * 13 3 2 35 35 H 1.08001 * 125.87792 * 359.94172 * 18 17 14 36 36 H 1.08000 * 120.03298 * 359.97438 * 22 21 20 37 37 H 1.07994 * 119.96545 * 180.29619 * 23 22 21 38 38 H 1.07993 * 119.93602 * 179.76980 * 24 23 22 39 39 H 1.08004 * 119.96831 * 179.97438 * 25 24 23 40 40 H 1.07995 * 120.03959 * 180.02562 * 26 25 24 41 41 H 1.07998 * 126.14440 * 180.21785 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6279 1.9736 -0.8581 5 6 3.5447 1.4433 -0.0840 6 1 4.1293 1.8952 0.7037 7 6 4.1750 0.8671 -1.1665 8 7 3.4631 0.3173 -2.1259 9 14 6.0401 0.8676 -1.2703 10 1 6.6023 1.5440 -0.0739 11 1 6.5332 -0.5320 -1.3257 12 1 6.4676 1.5918 -2.4944 13 7 1.6195 2.1091 1.2349 14 16 1.2031 3.7117 1.2103 15 8 0.8244 4.0483 2.5379 16 8 2.2360 4.3838 0.5026 17 6 -0.2510 3.8577 0.2259 18 6 -1.5683 3.8516 0.6976 19 7 -2.3712 3.9817 -0.3277 20 7 -1.5899 4.0756 -1.4866 21 6 -2.0698 4.2250 -2.7953 22 6 -1.1794 4.3117 -3.8570 23 6 -1.6554 4.4536 -5.1459 24 6 -3.0169 4.5203 -5.3781 25 6 -3.9060 4.4399 -4.3221 26 6 -3.4363 4.2922 -3.0316 27 6 -0.2907 4.0022 -1.1189 28 1 -0.3633 0.4326 0.9321 29 1 -0.3633 -1.0236 -0.0915 30 1 -0.3632 0.5910 -0.8407 31 1 1.8933 -0.5138 0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 3.9066 -0.0877 -2.8876 34 1 1.5850 1.6118 2.0670 35 1 -1.8704 3.7555 1.7300 36 1 -0.1158 4.2645 -3.6757 37 1 -0.9634 4.5163 -5.9726 38 1 -3.3866 4.6351 -6.3862 39 1 -4.9688 4.4927 -4.5065 40 1 -4.1311 4.2290 -2.2073 41 1 0.5620 4.0476 -1.7801 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186429769.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:19 Heat of formation + Delta-G solvation = 7.730335 kcal Electronic energy + Delta-G solvation = -26937.357786 eV Core-core repulsion = 23138.159041 eV Total energy + Delta-G solvation = -3799.198745 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.79319 -39.99218 -38.17235 -37.62129 -36.73981 -34.72642 -34.10105 -32.40985 -32.21208 -31.45752 -30.17057 -28.49171 -24.93755 -24.84059 -24.27661 -22.35474 -22.08075 -21.78397 -20.38787 -19.56566 -18.66562 -18.25095 -17.54225 -17.08732 -16.93673 -16.57134 -16.45621 -16.22743 -15.52474 -15.37129 -14.99129 -14.85026 -14.68232 -14.60032 -14.09964 -13.89819 -13.57095 -13.34042 -13.10276 -13.01268 -13.00366 -12.94493 -12.68271 -12.67473 -12.58223 -12.15294 -12.05469 -11.85009 -11.62645 -11.58879 -11.55262 -11.40927 -10.69921 -10.42185 -10.09524 -9.96758 -9.36064 -8.07136 -6.18695 -0.45730 -0.30659 0.26252 0.85198 1.12333 1.16205 1.43253 1.47366 1.57867 2.39669 2.51060 2.71184 2.94897 3.07046 3.19959 3.48324 3.65761 3.83405 3.88909 4.10453 4.17422 4.35748 4.38800 4.46851 4.47992 4.56714 4.60647 4.70939 4.88596 4.95662 5.06791 5.14802 5.28002 5.32938 5.33081 5.41018 5.44483 5.61834 5.71993 5.82288 5.96386 6.05428 6.20851 6.31714 6.51949 6.88551 7.49746 8.95314 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011112 B = 0.004439 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.191586 B = 6306.271067 C = 7606.112167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.120 4.120 3 C 0.289 3.711 4 H 0.024 0.976 5 C -0.537 4.537 6 H 0.052 0.948 7 C 0.024 3.976 8 N -0.911 5.911 9 Si 0.944 3.056 10 H -0.275 1.275 11 H -0.277 1.277 12 H -0.282 1.282 13 N -1.098 6.098 14 S 2.739 3.261 15 O -0.990 6.990 16 O -0.991 6.991 17 C -0.806 4.806 18 C 0.140 3.860 19 N -0.302 5.302 20 N -0.311 5.311 21 C 0.113 3.887 22 C -0.151 4.151 23 C -0.093 4.093 24 C -0.116 4.116 25 C -0.096 4.096 26 C -0.127 4.127 27 C 0.176 3.824 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.028 0.972 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.264 0.736 34 H 0.417 0.583 35 H 0.230 0.770 36 H 0.131 0.869 37 H 0.159 0.841 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.133 0.867 41 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.587 5.424 -5.176 16.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.160 4.160 3 C 0.183 3.817 4 H 0.042 0.958 5 C -0.577 4.577 6 H 0.070 0.930 7 C -0.175 4.175 8 N -0.550 5.550 9 Si 0.770 3.230 10 H -0.200 1.200 11 H -0.203 1.203 12 H -0.208 1.208 13 N -0.859 5.859 14 S 2.827 3.173 15 O -0.980 6.980 16 O -0.981 6.981 17 C -0.904 4.904 18 C -0.049 4.049 19 N -0.120 5.120 20 N -0.082 5.082 21 C 0.022 3.978 22 C -0.171 4.171 23 C -0.112 4.112 24 C -0.134 4.134 25 C -0.114 4.114 26 C -0.146 4.146 27 C 0.025 3.975 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.252 0.748 35 H 0.246 0.754 36 H 0.149 0.851 37 H 0.176 0.824 38 H 0.182 0.818 39 H 0.180 0.820 40 H 0.151 0.849 41 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -15.424 6.206 -5.596 17.543 hybrid contribution 1.645 -0.641 0.221 1.779 sum -13.779 5.565 -5.375 15.803 Atomic orbital electron populations 1.21689 0.96561 1.00473 1.00519 1.21705 0.93952 0.98143 1.02196 1.18246 0.92616 0.90710 0.80081 0.95830 1.21884 0.93111 1.36518 1.06165 0.92998 1.25470 1.01761 0.94953 0.95350 1.69938 1.36135 1.38825 1.10129 0.85727 0.81657 0.77702 0.77891 1.19969 1.20262 1.20773 1.55297 1.82416 1.30055 1.18159 1.00160 0.72558 0.72500 0.72095 1.93483 1.84774 1.83373 1.36419 1.93540 1.55285 1.73759 1.75538 1.31698 1.19245 1.32452 1.07009 1.24106 0.87947 0.92770 1.00124 1.77355 1.18799 1.25421 0.90389 1.46489 1.04126 1.51695 1.05882 1.18077 0.95176 1.05016 0.79518 1.21203 0.99715 1.03549 0.92679 1.21391 0.97179 0.97253 0.95351 1.21724 0.92602 0.98145 1.00947 1.21463 1.01999 0.97363 0.90550 1.21076 0.92244 1.01757 0.99565 1.22739 0.88801 0.90736 0.95177 0.92356 0.92972 0.95280 0.93457 0.90498 0.92712 0.74815 0.75417 0.85121 0.82362 0.81799 0.81998 0.84875 0.78486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 9.72 71.98 0.70 -4.06 16 2 C -0.12 -5.10 5.37 30.59 0.16 -4.94 16 3 C 0.29 13.16 2.17 44.24 0.10 13.26 16 4 H 0.02 1.15 7.45 -2.38 -0.02 1.13 16 5 C -0.54 -28.29 8.84 25.60 0.23 -28.06 16 6 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 7 C 0.02 1.29 5.30 84.66 0.45 1.74 16 8 N -0.91 -48.58 11.30 21.45 0.24 -48.34 16 9 Si 0.94 42.75 29.54 68.60 2.03 44.78 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 13 N -1.10 -42.25 4.93 -172.52 -0.85 -43.10 16 14 S 2.74 103.91 5.79 -56.49 -0.33 103.58 16 15 O -0.99 -38.04 17.84 -128.00 -2.28 -40.33 16 16 O -0.99 -45.24 17.63 -128.00 -2.26 -47.50 16 17 C -0.81 -27.18 6.04 22.00 0.13 -27.04 16 18 C 0.14 4.18 11.78 85.24 1.00 5.18 16 19 N -0.30 -9.45 11.87 -56.97 -0.68 -10.12 16 20 N -0.31 -9.79 3.80 -187.76 -0.71 -10.51 16 21 C 0.11 3.08 6.69 38.09 0.25 3.33 16 22 C -0.15 -3.61 9.46 22.39 0.21 -3.39 16 23 C -0.09 -1.62 10.04 22.25 0.22 -1.39 16 24 C -0.12 -1.61 10.04 22.29 0.22 -1.39 16 25 C -0.10 -1.50 10.04 22.25 0.22 -1.28 16 26 C -0.13 -2.87 9.66 22.39 0.22 -2.66 16 27 C 0.18 5.87 10.15 83.50 0.85 6.72 16 28 H 0.06 1.82 7.85 -2.39 -0.02 1.80 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.08 3.74 5.99 -2.39 -0.01 3.72 16 33 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 34 H 0.42 13.91 8.85 -96.75 -0.86 13.05 16 35 H 0.23 5.16 8.06 -2.91 -0.02 5.13 16 36 H 0.13 3.13 6.74 -2.91 -0.02 3.11 16 37 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 38 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 39 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 40 H 0.13 3.05 7.70 -2.91 -0.02 3.02 16 41 H 0.20 6.28 7.04 -2.91 -0.02 6.26 16 Total: -1.00 -69.24 363.70 0.34 -68.90 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 0.21 Total: 26.62 kcal Atomic # 6 Polarization: -48.96 SS G_CDS: 4.97 Total: -43.99 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -2.00 Total: -112.07 kcal Atomic # 8 Polarization: -83.28 SS G_CDS: -4.54 Total: -87.82 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: 103.91 SS G_CDS: -0.33 Total: 103.58 kcal Total: -69.24 0.34 -68.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186429769.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.628 kcal (2) G-P(sol) polarization free energy of solvation -69.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds