Wall clock time and date at job start Tue Mar 31 2020 18:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50707 * 109.47209 * 2 1 4 4 C 1.38256 * 119.99581 * 269.96165 * 3 2 1 5 5 C 1.38212 * 120.00153 * 179.97438 * 4 3 2 6 6 C 1.38258 * 119.99633 * 0.02589 * 5 4 3 7 7 C 1.38221 * 120.00178 * 359.76995 * 6 5 4 8 8 C 1.38208 * 120.00305 * 89.98625 * 3 2 1 9 9 S 1.76208 * 119.99751 * 359.97438 * 8 3 2 10 10 O 1.42093 * 106.40348 * 310.69166 * 9 8 3 11 11 O 1.42105 * 106.39818 * 177.77526 * 9 8 3 12 12 N 1.65599 * 107.21761 * 64.23709 * 9 8 3 13 13 C 1.39984 * 120.00118 * 63.45593 * 12 9 8 14 14 C 1.40432 * 125.97667 * 185.14486 * 13 12 9 15 15 C 1.35251 * 107.86402 * 179.74448 * 14 13 12 16 16 N 1.34962 * 107.85725 * 0.42013 * 15 14 13 17 17 C 1.46504 * 125.96702 * 179.83565 * 16 15 14 18 18 C 1.50704 * 109.46890 * 123.56754 * 17 16 15 19 19 H 1.07998 * 119.99760 * 355.13893 * 18 17 16 20 20 C 1.37873 * 120.00279 * 175.14485 * 18 17 16 21 21 N 1.31516 * 119.99710 * 359.72272 * 20 18 17 22 22 Si 1.86795 * 120.00147 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47553 * 269.72469 * 22 20 18 24 24 H 1.48495 * 109.47132 * 29.72437 * 22 20 18 25 25 H 1.48508 * 109.46942 * 149.72372 * 22 20 18 26 26 N 1.31219 * 125.97673 * 5.15351 * 13 12 9 27 27 H 1.09001 * 109.47615 * 306.68762 * 1 2 3 28 28 H 1.09002 * 109.47165 * 66.68869 * 1 2 3 29 29 H 1.08998 * 109.47263 * 186.68299 * 1 2 3 30 30 H 1.08991 * 109.47710 * 239.99491 * 2 1 3 31 31 H 1.09004 * 109.47135 * 119.99430 * 2 1 3 32 32 H 1.07999 * 120.00336 * 0.02562 * 4 3 2 33 33 H 1.07999 * 120.00243 * 180.02562 * 5 4 3 34 34 H 1.07997 * 120.00296 * 179.97438 * 6 5 4 35 35 H 1.08000 * 120.00055 * 180.25117 * 7 6 5 36 36 H 0.96999 * 119.99557 * 243.45836 * 12 9 8 37 37 H 1.08000 * 126.06647 * 0.02562 * 14 13 12 38 38 H 1.07997 * 126.07040 * 180.26564 * 15 14 13 39 39 H 1.09004 * 109.47279 * 3.57067 * 17 16 15 40 40 H 1.08995 * 109.47663 * 243.56436 * 17 16 15 41 41 H 0.97001 * 120.00368 * 0.27520 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2635 2.0723 -1.1974 5 6 2.7237 3.3755 -1.1975 6 6 2.9534 4.0276 -0.0002 7 6 2.7183 3.3778 1.1969 8 6 2.2624 2.0725 1.1969 9 16 1.9677 1.2423 2.7229 10 8 0.6697 0.6725 2.6256 11 8 2.3439 2.1478 3.7515 12 7 3.0301 -0.0254 2.8043 13 6 4.4081 0.2176 2.8444 14 6 5.4190 -0.7567 2.8117 15 6 6.6110 -0.1197 2.8636 16 7 6.3690 1.2060 2.9361 17 6 7.3810 2.2625 3.0129 18 6 7.1788 3.2352 1.8797 19 1 6.4278 3.0404 1.1285 20 6 7.9527 4.3736 1.8018 21 7 8.8637 4.6134 2.7196 22 14 7.7026 5.5788 0.3968 23 1 8.5863 5.2074 -0.7373 24 1 6.2856 5.5364 -0.0453 25 1 8.0369 6.9509 0.8562 26 7 4.9812 1.3956 2.9191 27 1 -0.3634 0.6140 0.8241 28 1 -0.3633 0.4067 -0.9438 29 1 -0.3634 -1.0206 0.1196 30 1 1.8933 -0.5139 -0.8898 31 1 1.8933 -0.5138 0.8901 32 1 2.0837 1.5631 -2.1327 33 1 2.9039 3.8845 -2.1329 34 1 3.3134 5.0458 -0.0002 35 1 2.8939 3.8885 2.1321 36 1 2.6975 -0.9364 2.8242 37 1 5.2709 -1.8248 2.7510 38 1 7.5836 -0.5889 2.8518 39 1 8.3745 1.8201 2.9390 40 1 7.2869 2.7876 3.9634 41 1 8.9938 3.9874 3.4491 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187459940.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:12:11 Heat of formation + Delta-G solvation = 6.754817 kcal Electronic energy + Delta-G solvation = -27579.525061 eV Core-core repulsion = 23780.284014 eV Total energy + Delta-G solvation = -3799.241047 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.08139 -40.46710 -38.57271 -37.14647 -36.89662 -35.57977 -35.04531 -32.42317 -32.27587 -30.98965 -30.37566 -28.12238 -25.19765 -25.00666 -24.30870 -22.53066 -22.22336 -22.16033 -20.32522 -19.24247 -18.89503 -18.70897 -18.23671 -17.21783 -16.85006 -16.59191 -16.05690 -15.92441 -15.64333 -15.61428 -15.02789 -14.89471 -14.63139 -14.51031 -14.31234 -14.25288 -13.64494 -13.52884 -13.36929 -13.28400 -13.21295 -13.20222 -13.07088 -12.76627 -12.66843 -12.49710 -12.10247 -11.99109 -11.79270 -11.57804 -11.45813 -11.02888 -10.67033 -10.39328 -9.93050 -9.83156 -9.27418 -8.74898 -6.51608 -0.88116 -0.19632 0.28773 1.11453 1.33483 1.47640 1.56111 1.74911 1.87902 2.03091 2.36884 2.48461 2.66138 3.03689 3.27149 3.55275 3.59479 3.72916 3.93627 4.01243 4.14950 4.30348 4.38728 4.40068 4.45607 4.54136 4.66356 4.75926 4.77506 4.83640 4.92485 4.93741 4.99303 5.05066 5.16820 5.32074 5.35947 5.50833 5.55061 5.71470 5.86509 5.89491 5.96917 6.30861 6.44274 6.88588 7.23569 8.61863 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011951 B = 0.005384 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.267578 B = 5199.146785 C = 6517.139288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C 0.011 3.989 4 C -0.143 4.143 5 C -0.058 4.058 6 C -0.160 4.160 7 C -0.024 4.024 8 C -0.678 4.678 9 S 2.701 3.299 10 O -0.949 6.949 11 O -0.981 6.981 12 N -0.999 5.999 13 C 0.276 3.724 14 C -0.287 4.287 15 C 0.063 3.937 16 N -0.342 5.342 17 C 0.257 3.743 18 C -0.611 4.611 19 H 0.046 0.954 20 C -0.018 4.018 21 N -0.928 5.928 22 Si 1.111 2.889 23 H -0.266 1.266 24 H -0.273 1.273 25 H -0.281 1.281 26 N -0.347 5.347 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.066 0.934 32 H 0.167 0.833 33 H 0.163 0.837 34 H 0.135 0.865 35 H 0.117 0.883 36 H 0.448 0.552 37 H 0.189 0.811 38 H 0.208 0.792 39 H 0.059 0.941 40 H 0.010 0.990 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.886 -12.489 -9.055 20.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C 0.009 3.991 4 C -0.161 4.161 5 C -0.076 4.076 6 C -0.179 4.179 7 C -0.043 4.043 8 C -0.768 4.768 9 S 2.794 3.206 10 O -0.939 6.939 11 O -0.971 6.971 12 N -0.757 5.757 13 C 0.019 3.981 14 C -0.319 4.319 15 C -0.085 4.085 16 N -0.124 5.124 17 C 0.137 3.863 18 C -0.649 4.649 19 H 0.065 0.935 20 C -0.218 4.218 21 N -0.564 5.564 22 Si 0.932 3.068 23 H -0.191 1.191 24 H -0.198 1.198 25 H -0.206 1.206 26 N -0.177 5.177 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.132 0.868 31 H 0.085 0.915 32 H 0.184 0.816 33 H 0.180 0.820 34 H 0.153 0.847 35 H 0.135 0.865 36 H 0.289 0.711 37 H 0.206 0.794 38 H 0.225 0.775 39 H 0.077 0.923 40 H 0.028 0.972 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.050 -9.347 -8.921 18.365 hybrid contribution 0.208 -2.020 0.752 2.165 sum -12.842 -11.367 -8.170 18.996 Atomic orbital electron populations 1.21905 0.92396 1.03862 1.02836 1.21060 0.98422 0.90317 1.04928 1.19932 0.91138 0.96370 0.91664 1.21527 1.00998 0.95246 0.98378 1.21858 0.92332 0.94735 0.98647 1.21513 1.01918 1.01700 0.92808 1.20904 0.90929 0.92846 0.99659 1.30259 1.19912 1.07386 1.19243 1.01522 0.72402 0.72628 0.74000 1.93593 1.35132 1.77781 1.87439 1.93567 1.83278 1.64429 1.55845 1.52402 1.11342 1.24774 1.87174 1.19019 0.84771 0.93313 1.01036 1.21359 0.88577 1.01021 1.20986 1.23234 1.02120 0.83270 0.99862 1.48576 1.02996 1.06590 1.54224 1.19446 0.84490 0.85163 0.97183 1.22244 1.22842 1.08904 1.10894 0.93538 1.27152 0.92271 0.99276 1.03099 1.70911 1.33444 1.39036 1.13022 0.83018 0.77011 0.74048 0.72717 1.19126 1.19757 1.20619 1.77478 0.90125 1.20314 1.29805 0.92142 0.91367 0.90164 0.86785 0.91543 0.81559 0.81991 0.84666 0.86511 0.71052 0.79429 0.77538 0.92293 0.97167 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.37 71.98 0.67 -2.27 16 2 C -0.11 -2.26 5.31 29.85 0.16 -2.10 16 3 C 0.01 0.29 5.12 -19.86 -0.10 0.18 16 4 C -0.14 -3.36 9.70 22.27 0.22 -3.15 16 5 C -0.06 -1.47 10.05 22.27 0.22 -1.25 16 6 C -0.16 -5.20 10.05 22.27 0.22 -4.97 16 7 C -0.02 -0.89 9.55 22.27 0.21 -0.68 16 8 C -0.68 -23.09 5.81 22.27 0.13 -22.96 16 9 S 2.70 92.23 4.70 -56.49 -0.27 91.97 16 10 O -0.95 -29.94 14.06 -128.00 -1.80 -31.74 16 11 O -0.98 -43.00 16.18 -128.00 -2.07 -45.07 16 12 N -1.00 -29.09 4.71 -54.61 -0.26 -29.35 16 13 C 0.28 9.97 7.71 133.39 1.03 11.00 16 14 C -0.29 -8.48 10.83 22.12 0.24 -8.24 16 15 C 0.06 2.12 11.43 83.52 0.96 3.07 16 16 N -0.34 -15.28 3.66 -351.83 -1.29 -16.57 16 17 C 0.26 12.94 5.61 85.63 0.48 13.42 16 18 C -0.61 -34.08 9.25 25.60 0.24 -33.84 16 19 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 20 C -0.02 -1.03 5.46 84.65 0.46 -0.56 16 21 N -0.93 -54.27 13.65 21.45 0.29 -53.98 16 22 Si 1.11 49.14 29.90 68.60 2.05 51.19 16 23 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 26 N -0.35 -15.95 11.46 -54.55 -0.62 -16.57 16 27 H 0.06 1.49 5.89 -2.39 -0.01 1.47 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.11 1.68 8.08 -2.39 -0.02 1.66 16 31 H 0.07 1.34 5.07 -2.39 -0.01 1.32 16 32 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 33 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 34 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 35 H 0.12 4.86 7.34 -2.91 -0.02 4.84 16 36 H 0.45 8.72 8.57 -96.75 -0.83 7.89 16 37 H 0.19 3.68 8.06 -2.91 -0.02 3.65 16 38 H 0.21 5.01 8.06 -2.91 -0.02 4.99 16 39 H 0.06 2.77 8.06 -2.39 -0.02 2.76 16 40 H 0.01 0.57 7.81 -2.39 -0.02 0.55 16 41 H 0.26 15.11 7.19 -92.71 -0.67 14.44 16 Total: -1.00 -78.42 357.29 1.52 -76.90 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.34 Total: 25.56 kcal Atomic # 6 Polarization: -57.48 SS G_CDS: 5.14 Total: -52.34 kcal Atomic # 7 Polarization: -114.59 SS G_CDS: -1.88 Total: -116.47 kcal Atomic # 8 Polarization: -72.94 SS G_CDS: -3.87 Total: -76.81 kcal Atomic # 14 Polarization: 49.14 SS G_CDS: 2.05 Total: 51.19 kcal Atomic # 16 Polarization: 92.23 SS G_CDS: -0.27 Total: 91.97 kcal Total: -78.42 1.52 -76.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187459940.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.657 kcal (2) G-P(sol) polarization free energy of solvation -78.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds