Wall clock time and date at job start Tue Mar 31 2020 19:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.50706 * 109.46812 * 119.99589 * 2 1 3 5 5 H 1.07998 * 119.99769 * 120.00769 * 4 2 1 6 6 C 1.37877 * 120.00286 * 299.99911 * 4 2 1 7 7 N 1.31515 * 119.99896 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99872 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47398 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46974 * 120.00544 * 8 6 4 11 11 H 1.48508 * 109.47010 * 240.00184 * 8 6 4 12 12 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 13 13 C 1.34777 * 119.99665 * 85.27876 * 12 2 1 14 14 O 1.21693 * 120.00200 * 359.72115 * 13 12 2 15 15 C 1.46658 * 119.99639 * 179.72443 * 13 12 2 16 16 C 1.36545 * 125.98797 * 179.97438 * 15 13 12 17 17 C 1.40362 * 106.71183 * 179.97438 * 16 15 13 18 18 C 1.35135 * 107.10950 * 0.02562 * 17 16 15 19 19 C 1.50702 * 125.61301 * 180.02562 * 18 17 16 20 20 S 1.80998 * 109.46906 * 89.99813 * 19 18 17 21 21 C 1.76201 * 99.99958 * 179.97438 * 20 19 18 22 22 N 1.31262 * 125.80364 * 0.02867 * 21 20 19 23 23 C 1.34364 * 109.30864 * 179.97438 * 22 21 20 24 24 C 1.34385 * 108.34390 * 359.97438 * 23 22 21 25 25 N 1.36116 * 125.80473 * 179.71796 * 21 20 19 26 26 C 1.46506 * 126.49938 * 0.02562 * 25 21 20 27 27 O 1.33922 * 108.77032 * 359.76841 * 18 17 16 28 28 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 29 29 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 30 30 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 31 31 H 0.96999 * 119.99952 * 179.97438 * 7 6 4 32 32 H 0.97001 * 119.99790 * 264.99588 * 12 2 1 33 33 H 1.08008 * 126.64450 * 359.92835 * 16 15 13 34 34 H 1.07993 * 126.44536 * 179.97438 * 17 16 15 35 35 H 1.09001 * 109.47194 * 209.99995 * 19 18 17 36 36 H 1.09002 * 109.47413 * 330.00315 * 19 18 17 37 37 H 1.08004 * 125.83068 * 180.02562 * 23 22 21 38 38 H 1.08001 * 126.51956 * 180.02562 * 24 23 22 39 39 H 1.09001 * 109.46678 * 90.00556 * 26 25 21 40 40 H 1.08998 * 109.46804 * 210.00114 * 26 25 21 41 41 H 1.08996 * 109.47063 * 330.00743 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.1483 -2.2855 3.6040 10 1 3.1471 -0.1855 4.8162 11 1 1.1676 -1.5865 4.8166 12 7 2.0184 -0.6906 -1.1961 13 6 2.1524 -0.0169 -2.3557 14 8 1.8630 1.1638 -2.4104 15 6 2.6471 -0.7068 -3.5516 16 6 2.8290 -0.1467 -4.7835 17 6 3.3136 -1.1631 -5.6215 18 6 3.4046 -2.2851 -4.8739 19 6 3.8814 -3.6287 -5.3622 20 16 5.6723 -3.7534 -5.1323 21 6 5.9503 -5.3734 -5.7670 22 7 5.0315 -6.1774 -6.2491 23 6 5.6074 -7.3266 -6.6401 24 6 6.9265 -7.2425 -6.3973 25 7 7.1551 -6.0017 -5.8463 26 6 8.4494 -5.4612 -5.4230 27 8 3.0066 -2.0051 -3.6262 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7081 1.1610 3.4844 32 1 2.2491 -1.6318 -1.1525 33 1 2.6365 0.8796 -5.0598 34 1 3.5656 -1.0667 -6.6672 35 1 3.3865 -4.4177 -4.7958 36 1 3.6426 -3.7365 -6.4203 37 1 5.0975 -8.1731 -7.0759 38 1 7.6670 -8.0023 -6.5997 39 1 8.6273 -5.7200 -4.3792 40 1 9.2401 -5.8848 -6.0422 41 1 8.4435 -4.3768 -5.5325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194739179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:29 Heat of formation + Delta-G solvation = 41.201173 kcal Electronic energy + Delta-G solvation = -24892.080850 eV Core-core repulsion = 21094.333509 eV Total energy + Delta-G solvation = -3797.747341 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.66414 -42.11522 -38.72934 -34.95072 -34.42989 -33.39583 -32.39280 -32.09234 -30.03749 -29.23510 -27.40823 -27.00990 -25.27559 -22.85925 -22.09980 -21.79827 -21.39685 -20.58353 -19.58936 -18.42398 -18.06151 -16.70790 -16.27512 -16.18064 -15.98850 -15.36945 -15.24527 -14.67702 -14.48157 -14.45430 -14.02554 -13.85766 -13.65009 -13.49943 -13.35893 -13.13518 -12.92988 -12.87452 -12.44916 -12.30483 -11.74497 -11.15466 -11.11538 -10.98963 -10.80221 -10.47421 -10.34702 -10.25865 -10.07453 -9.98634 -9.72342 -9.50990 -9.08018 -8.61077 -8.52227 -7.99522 -7.77228 -6.14347 -4.23551 0.53400 1.34261 1.52735 1.75935 2.42309 2.54488 2.67701 2.69669 3.23811 3.31561 3.34899 3.72574 3.90103 4.25092 4.31340 4.38875 4.44347 4.65467 4.77439 4.91203 4.91515 4.96606 5.18218 5.20497 5.23713 5.30100 5.68644 5.73534 5.80282 5.93556 6.31747 6.35959 6.49812 6.77574 6.87994 6.93488 7.09837 7.31990 7.50383 7.51329 7.66775 7.86828 8.10269 8.53590 8.69871 8.94112 9.43426 10.91832 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013061 B = 0.002460 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.266206 B =11379.852252 C =12853.075851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.262 3.738 3 H 0.053 0.947 4 C -0.534 4.534 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.691 5.691 13 C 0.583 3.417 14 O -0.530 6.530 15 C -0.037 4.037 16 C -0.142 4.142 17 C -0.182 4.182 18 C -0.003 4.003 19 C -0.014 4.014 20 S -0.002 6.002 21 C 0.186 3.814 22 N -0.490 5.490 23 C -0.017 4.017 24 C -0.049 4.049 25 N -0.449 5.449 26 C 0.070 3.930 27 O -0.153 6.153 28 H 0.093 0.907 29 H 0.016 0.984 30 H 0.028 0.972 31 H 0.264 0.736 32 H 0.395 0.605 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.116 0.884 36 H 0.126 0.874 37 H 0.174 0.826 38 H 0.179 0.821 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.161 -14.084 -19.808 27.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.071 0.929 4 C -0.572 4.572 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.337 5.337 13 C 0.366 3.634 14 O -0.410 6.410 15 C -0.091 4.091 16 C -0.162 4.162 17 C -0.204 4.204 18 C -0.057 4.057 19 C -0.162 4.162 20 S 0.231 5.769 21 C -0.184 4.184 22 N -0.212 5.212 23 C -0.167 4.167 24 C -0.183 4.183 25 N -0.135 5.135 26 C -0.073 4.073 27 O -0.048 6.048 28 H 0.111 0.889 29 H 0.035 0.965 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.228 0.772 33 H 0.180 0.820 34 H 0.175 0.825 35 H 0.135 0.865 36 H 0.144 0.856 37 H 0.191 0.809 38 H 0.196 0.804 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.948 -12.337 -18.939 26.049 hybrid contribution 0.533 -2.112 0.211 2.189 sum 13.481 -14.450 -18.728 27.226 Atomic orbital electron populations 1.22092 0.98037 0.99402 1.01142 1.18895 0.91338 0.94098 0.79608 0.92936 1.21236 1.32538 1.13330 0.90144 0.91862 1.24883 0.94761 0.94949 0.99080 1.69908 1.35811 1.22444 1.23876 0.86367 0.78630 0.79543 0.82425 1.19673 1.20837 1.20827 1.46574 1.63112 1.13882 1.10164 1.16667 0.79239 0.86057 0.81405 1.90848 1.52160 1.14247 1.83764 1.22864 1.06837 0.81271 0.98146 1.21921 1.01753 1.01237 0.91309 1.21582 1.05818 0.91604 1.01440 1.21497 1.04944 0.95943 0.83297 1.21733 0.93850 0.94399 1.06229 1.85872 1.08646 1.04647 1.77752 1.25188 0.83752 1.01377 1.08078 1.70755 1.30259 1.03126 1.17109 1.22315 0.91473 0.97295 1.05621 1.22860 0.99387 0.88898 1.07199 1.45463 1.07536 1.13201 1.47258 1.22139 0.82142 1.01087 1.01890 1.84046 1.63519 1.27346 1.29920 0.88858 0.96464 0.95255 0.92556 0.77174 0.81996 0.82471 0.86548 0.85568 0.80886 0.80424 0.89943 0.89128 0.89108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.36 16 2 C 0.26 6.73 2.56 -69.08 -0.18 6.55 16 3 H 0.05 1.53 7.57 -51.93 -0.39 1.14 16 4 C -0.53 -14.27 8.73 -34.44 -0.30 -14.57 16 5 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.79 11.32 55.43 0.63 -24.16 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.69 -15.12 5.06 -56.25 -0.28 -15.41 16 13 C 0.58 12.35 7.75 -12.86 -0.10 12.25 16 14 O -0.53 -12.83 16.52 5.20 0.09 -12.74 16 15 C -0.04 -0.64 7.13 -36.80 -0.26 -0.90 16 16 C -0.14 -2.08 10.62 -39.39 -0.42 -2.50 16 17 C -0.18 -2.19 10.77 -39.89 -0.43 -2.62 16 18 C 0.00 -0.04 6.57 -35.41 -0.23 -0.27 16 19 C -0.01 -0.15 5.73 36.01 0.21 0.05 16 20 S 0.00 -0.02 21.61 -107.50 -2.32 -2.34 16 21 C 0.19 2.05 7.96 -88.75 -0.71 1.34 16 22 N -0.49 -5.84 10.60 -13.45 -0.14 -5.98 16 23 C -0.02 -0.16 11.84 -17.80 -0.21 -0.37 16 24 C -0.05 -0.37 11.60 -16.28 -0.19 -0.56 16 25 N -0.45 -3.91 3.20 -124.33 -0.40 -4.31 16 26 C 0.07 0.35 11.01 59.85 0.66 1.01 16 27 O -0.15 -2.40 10.40 5.02 0.05 -2.34 16 28 H 0.09 2.51 6.07 -51.93 -0.32 2.20 16 29 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.40 7.81 8.30 -40.82 -0.34 7.47 16 33 H 0.16 2.21 8.06 -52.48 -0.42 1.78 16 34 H 0.16 1.39 8.06 -52.49 -0.42 0.96 16 35 H 0.12 1.26 8.14 -51.92 -0.42 0.84 16 36 H 0.13 1.14 8.14 -51.91 -0.42 0.72 16 37 H 0.17 1.16 8.06 -52.48 -0.42 0.74 16 38 H 0.18 0.70 8.06 -52.49 -0.42 0.28 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.09 0.45 7.73 -51.93 -0.40 0.05 16 LS Contribution 373.22 15.07 5.62 5.62 Total: -1.00 -33.04 373.22 -8.91 -41.95 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.22 Total: 6.25 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -1.91 Total: -2.24 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.20 Total: -49.86 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: 0.14 Total: -15.08 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.32 Total: -2.34 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.04 -8.91 -41.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194739179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.148 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds