Wall clock time and date at job start Tue Mar 31 2020 19:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.50706 * 109.46812 * 119.99589 * 2 1 3 5 5 H 1.07998 * 119.99769 * 120.00769 * 4 2 1 6 6 C 1.37877 * 120.00286 * 299.99911 * 4 2 1 7 7 N 1.31515 * 119.99896 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99872 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47398 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46974 * 120.00544 * 8 6 4 11 11 H 1.48508 * 109.47010 * 240.00184 * 8 6 4 12 12 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 13 13 C 1.34777 * 119.99665 * 85.27876 * 12 2 1 14 14 O 1.21693 * 120.00200 * 359.72115 * 13 12 2 15 15 C 1.46658 * 119.99639 * 179.72443 * 13 12 2 16 16 C 1.36545 * 125.98797 * 179.97438 * 15 13 12 17 17 C 1.40362 * 106.71183 * 179.97438 * 16 15 13 18 18 C 1.35135 * 107.10950 * 0.02562 * 17 16 15 19 19 C 1.50702 * 125.61301 * 180.02562 * 18 17 16 20 20 S 1.80998 * 109.46906 * 89.99813 * 19 18 17 21 21 C 1.76201 * 99.99958 * 179.97438 * 20 19 18 22 22 N 1.31262 * 125.80364 * 0.02867 * 21 20 19 23 23 C 1.34364 * 109.30864 * 179.97438 * 22 21 20 24 24 C 1.34385 * 108.34390 * 359.97438 * 23 22 21 25 25 N 1.36116 * 125.80473 * 179.71796 * 21 20 19 26 26 C 1.46506 * 126.49938 * 0.02562 * 25 21 20 27 27 O 1.33922 * 108.77032 * 359.76841 * 18 17 16 28 28 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 29 29 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 30 30 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 31 31 H 0.96999 * 119.99952 * 179.97438 * 7 6 4 32 32 H 0.97001 * 119.99790 * 264.99588 * 12 2 1 33 33 H 1.08008 * 126.64450 * 359.92835 * 16 15 13 34 34 H 1.07993 * 126.44536 * 179.97438 * 17 16 15 35 35 H 1.09001 * 109.47194 * 209.99995 * 19 18 17 36 36 H 1.09002 * 109.47413 * 330.00315 * 19 18 17 37 37 H 1.08004 * 125.83068 * 180.02562 * 23 22 21 38 38 H 1.08001 * 126.51956 * 180.02562 * 24 23 22 39 39 H 1.09001 * 109.46678 * 90.00556 * 26 25 21 40 40 H 1.08998 * 109.46804 * 210.00114 * 26 25 21 41 41 H 1.08996 * 109.47063 * 330.00743 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.1483 -2.2855 3.6040 10 1 3.1471 -0.1855 4.8162 11 1 1.1676 -1.5865 4.8166 12 7 2.0184 -0.6906 -1.1961 13 6 2.1524 -0.0169 -2.3557 14 8 1.8630 1.1638 -2.4104 15 6 2.6471 -0.7068 -3.5516 16 6 2.8290 -0.1467 -4.7835 17 6 3.3136 -1.1631 -5.6215 18 6 3.4046 -2.2851 -4.8739 19 6 3.8814 -3.6287 -5.3622 20 16 5.6723 -3.7534 -5.1323 21 6 5.9503 -5.3734 -5.7670 22 7 5.0315 -6.1774 -6.2491 23 6 5.6074 -7.3266 -6.6401 24 6 6.9265 -7.2425 -6.3973 25 7 7.1551 -6.0017 -5.8463 26 6 8.4494 -5.4612 -5.4230 27 8 3.0066 -2.0051 -3.6262 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7081 1.1610 3.4844 32 1 2.2491 -1.6318 -1.1525 33 1 2.6365 0.8796 -5.0598 34 1 3.5656 -1.0667 -6.6672 35 1 3.3865 -4.4177 -4.7958 36 1 3.6426 -3.7365 -6.4203 37 1 5.0975 -8.1731 -7.0759 38 1 7.6670 -8.0023 -6.5997 39 1 8.6273 -5.7200 -4.3792 40 1 9.2401 -5.8848 -6.0422 41 1 8.4435 -4.3768 -5.5325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194739179.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:28 Heat of formation + Delta-G solvation = 20.753246 kcal Electronic energy + Delta-G solvation = -24892.967538 eV Core-core repulsion = 21094.333509 eV Total energy + Delta-G solvation = -3798.634029 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.83430 -42.75639 -40.46945 -36.87177 -35.04154 -34.64992 -34.17771 -33.22521 -31.15539 -30.63497 -28.26423 -27.88513 -27.36707 -24.30627 -22.96160 -22.65725 -22.41510 -22.01387 -21.16980 -19.86571 -18.87409 -18.03238 -17.76685 -17.25708 -16.95289 -16.78739 -16.50837 -16.14004 -15.71746 -15.27457 -15.20287 -15.05260 -14.78621 -14.46547 -14.26661 -14.22832 -14.01703 -13.89109 -13.74426 -13.52692 -13.30490 -13.03452 -12.92269 -12.78647 -12.31818 -12.15803 -11.95688 -11.28915 -11.17915 -11.14314 -11.09162 -10.71191 -10.64501 -10.40455 -10.02821 -9.57125 -8.50554 -8.20505 -6.38060 -0.42549 0.30336 0.85539 0.88837 1.40260 1.43658 1.44379 1.52543 1.57191 1.97240 2.01385 2.15260 2.29374 2.50050 3.09996 3.28699 3.76861 3.85506 3.86192 3.90839 4.06682 4.32643 4.34526 4.45071 4.52182 4.62368 4.65984 4.69484 4.72109 4.86935 4.88631 5.03110 5.15285 5.29978 5.34274 5.48054 5.59189 5.69809 5.73199 5.89259 5.93910 6.03722 6.65814 6.75634 6.83626 7.16309 7.35834 8.86275 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013061 B = 0.002460 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.266206 B =11379.852252 C =12853.075851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.268 3.732 3 H 0.008 0.992 4 C -0.550 4.550 5 H 0.070 0.930 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.974 3.026 9 H -0.263 1.263 10 H -0.281 1.281 11 H -0.277 1.277 12 N -0.692 5.692 13 C 0.585 3.415 14 O -0.571 6.571 15 C -0.077 4.077 16 C -0.122 4.122 17 C -0.174 4.174 18 C 0.010 3.990 19 C -0.011 4.011 20 S -0.002 6.002 21 C 0.159 3.841 22 N -0.519 5.519 23 C -0.046 4.046 24 C -0.033 4.033 25 N -0.451 5.451 26 C 0.062 3.938 27 O -0.165 6.165 28 H 0.072 0.928 29 H 0.016 0.984 30 H 0.039 0.961 31 H 0.267 0.733 32 H 0.405 0.595 33 H 0.171 0.829 34 H 0.197 0.803 35 H 0.111 0.889 36 H 0.145 0.855 37 H 0.191 0.809 38 H 0.217 0.783 39 H 0.088 0.912 40 H 0.119 0.881 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.176 -16.510 -21.295 30.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.165 3.835 3 H 0.026 0.974 4 C -0.588 4.588 5 H 0.088 0.912 6 C -0.183 4.183 7 N -0.552 5.552 8 Si 0.798 3.202 9 H -0.187 1.187 10 H -0.207 1.207 11 H -0.202 1.202 12 N -0.339 5.339 13 C 0.371 3.629 14 O -0.453 6.453 15 C -0.131 4.131 16 C -0.143 4.143 17 C -0.195 4.195 18 C -0.043 4.043 19 C -0.159 4.159 20 S 0.230 5.770 21 C -0.211 4.211 22 N -0.242 5.242 23 C -0.196 4.196 24 C -0.168 4.168 25 N -0.136 5.136 26 C -0.079 4.079 27 O -0.062 6.062 28 H 0.091 0.909 29 H 0.035 0.965 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.240 0.760 33 H 0.189 0.811 34 H 0.214 0.786 35 H 0.130 0.870 36 H 0.163 0.837 37 H 0.208 0.792 38 H 0.233 0.767 39 H 0.107 0.893 40 H 0.137 0.863 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.980 -14.778 -20.441 29.337 hybrid contribution 0.008 -1.470 0.517 1.558 sum 14.988 -16.247 -19.924 29.759 Atomic orbital electron populations 1.21917 0.97738 0.99665 1.00063 1.18527 0.91553 0.92200 0.81180 0.97372 1.21516 1.32873 1.13643 0.90748 0.91176 1.25780 0.94777 0.95578 1.02213 1.70041 1.36705 1.23750 1.24745 0.85270 0.78162 0.78476 0.78272 1.18667 1.20655 1.20207 1.46325 1.63657 1.14239 1.09683 1.17009 0.78116 0.85722 0.82037 1.90807 1.53848 1.15981 1.84710 1.22052 1.11099 0.82519 0.97417 1.22229 0.99379 1.02112 0.90549 1.21947 1.04766 0.89995 1.02819 1.22056 1.02938 0.97089 0.82228 1.21786 0.94190 0.92812 1.07079 1.85758 1.07870 1.05184 1.78172 1.25141 0.84813 1.01565 1.09566 1.70672 1.31511 1.04254 1.17796 1.22794 0.92646 0.97414 1.06724 1.23500 0.99644 0.88837 1.04830 1.45762 1.07931 1.13360 1.46523 1.22407 0.81341 1.01223 1.02898 1.84006 1.64110 1.26509 1.31565 0.90886 0.96482 0.94140 0.92340 0.75984 0.81144 0.78617 0.87047 0.83661 0.79194 0.76654 0.89330 0.86263 0.89272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.00 9.26 71.98 0.67 -6.33 16 2 C 0.27 14.36 2.56 44.25 0.11 14.47 16 3 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 4 C -0.55 -29.89 8.73 25.60 0.22 -29.66 16 5 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 6 C 0.02 0.92 5.30 84.65 0.45 1.37 16 7 N -0.91 -52.54 11.32 21.45 0.24 -52.30 16 8 Si 0.97 42.52 29.54 68.60 2.03 44.55 16 9 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 12 N -0.69 -31.38 5.06 -450.09 -2.28 -33.66 16 13 C 0.58 25.68 7.75 86.44 0.67 26.35 16 14 O -0.57 -28.90 16.52 -4.33 -0.07 -28.97 16 15 C -0.08 -2.70 7.13 24.07 0.17 -2.52 16 16 C -0.12 -3.44 10.62 22.39 0.24 -3.20 16 17 C -0.17 -3.71 10.77 22.07 0.24 -3.47 16 18 C 0.01 0.25 6.57 24.97 0.16 0.41 16 19 C -0.01 -0.21 5.73 71.24 0.41 0.19 16 20 S 0.00 -0.04 21.61 -56.49 -1.22 -1.26 16 21 C 0.16 3.26 7.96 179.69 1.43 4.69 16 22 N -0.52 -11.70 10.60 -196.46 -2.08 -13.78 16 23 C -0.05 -0.79 11.84 83.42 0.99 0.20 16 24 C -0.03 -0.41 11.60 82.89 0.96 0.56 16 25 N -0.45 -6.79 3.20 -547.25 -1.75 -8.54 16 26 C 0.06 0.47 11.01 127.77 1.41 1.88 16 27 O -0.17 -5.12 10.40 -4.96 -0.05 -5.17 16 28 H 0.07 4.08 6.07 -2.39 -0.01 4.06 16 29 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 32 H 0.41 16.44 8.30 -92.71 -0.77 15.67 16 33 H 0.17 4.45 8.06 -2.91 -0.02 4.43 16 34 H 0.20 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 36 H 0.15 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.19 2.22 8.06 -2.91 -0.02 2.20 16 38 H 0.22 0.78 8.06 -2.91 -0.02 0.76 16 39 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 41 H 0.09 0.71 7.73 -2.39 -0.02 0.70 16 Total: -1.00 -73.98 373.22 3.24 -70.74 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.30 Total: 23.46 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 8.13 Total: 4.93 kcal Atomic # 7 Polarization: -102.40 SS G_CDS: -5.87 Total: -108.28 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.12 Total: -34.14 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -1.22 Total: -1.26 kcal Total: -73.98 3.24 -70.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194739179.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.498 kcal (2) G-P(sol) polarization free energy of solvation -73.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds