Wall clock time and date at job start Tue Mar 31 2020 18:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 S 1.75358 * 124.29141 * 2 1 4 4 C 1.75746 * 92.18911 * 179.91487 * 3 2 1 5 5 N 1.33849 * 131.29149 * 180.02562 * 4 3 2 6 6 C 1.31268 * 120.99450 * 180.35281 * 5 4 3 7 7 C 1.50692 * 118.92305 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.47064 * 269.97791 * 7 6 5 9 9 C 1.50701 * 109.47426 * 180.02562 * 8 7 6 10 10 O 1.21293 * 119.99991 * 359.97438 * 9 8 7 11 11 N 1.34770 * 119.99919 * 180.02562 * 9 8 7 12 12 C 1.46503 * 120.00621 * 359.97438 * 11 9 8 13 13 C 1.37099 * 120.00037 * 179.97438 * 11 9 8 14 14 H 1.08007 * 119.99811 * 24.39377 * 13 11 9 15 15 C 1.38953 * 120.00130 * 204.39587 * 13 11 9 16 16 N 1.31410 * 120.00260 * 12.63813 * 15 13 11 17 17 Si 1.86800 * 119.99753 * 192.63522 * 15 13 11 18 18 H 1.48509 * 109.46873 * 90.00335 * 17 15 13 19 19 H 1.48499 * 109.47075 * 209.99725 * 17 15 13 20 20 H 1.48497 * 109.47380 * 330.00339 * 17 15 13 21 21 N 1.32136 * 122.15275 * 359.97438 * 6 5 4 22 22 C 1.32265 * 121.22537 * 0.02562 * 21 6 5 23 23 O 1.35445 * 120.50757 * 180.02562 * 22 21 6 24 24 C 1.39814 * 109.61083 * 0.34633 * 4 3 2 25 25 C 1.31864 * 124.29635 * 180.30596 * 2 1 3 26 26 C 1.50697 * 122.59625 * 0.02562 * 25 2 1 27 27 H 1.08999 * 109.46752 * 269.69008 * 1 2 3 28 28 H 1.08998 * 109.47024 * 29.69873 * 1 2 3 29 29 H 1.09009 * 109.46378 * 149.69840 * 1 2 3 30 30 H 1.08999 * 109.47733 * 29.97361 * 7 6 5 31 31 H 1.09005 * 109.47372 * 149.98023 * 7 6 5 32 32 H 1.09005 * 109.46896 * 300.00460 * 8 7 6 33 33 H 1.09005 * 109.46837 * 59.99904 * 8 7 6 34 34 H 1.08996 * 109.46964 * 85.85546 * 12 11 9 35 35 H 1.08988 * 109.47529 * 205.86621 * 12 11 9 36 36 H 1.09002 * 109.46468 * 325.86797 * 12 11 9 37 37 H 0.96993 * 119.99851 * 179.97438 * 16 15 13 38 38 H 0.96701 * 114.00377 * 269.97323 * 23 22 21 39 39 H 1.08997 * 109.47657 * 89.97522 * 26 25 2 40 40 H 1.08999 * 109.46963 * 209.97992 * 26 25 2 41 41 H 1.09001 * 109.46803 * 329.97673 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4950 1.4488 0.0000 4 6 3.9838 0.5148 0.0026 5 7 5.2664 0.8973 0.0043 6 6 6.2358 0.0122 -0.0008 7 6 7.6633 0.4948 0.0020 8 6 8.1467 0.6659 -1.4396 9 6 9.5745 1.1479 -1.4369 10 8 10.1489 1.3365 -0.3854 11 7 10.2128 1.3704 -2.6028 12 6 9.5189 1.1432 -3.8729 13 6 11.5116 1.8094 -2.6004 14 1 12.1469 1.6115 -1.7496 15 6 12.0106 2.5090 -3.6923 16 7 11.1894 2.9663 -4.6107 17 14 13.8487 2.7996 -3.8547 18 1 14.4626 1.6769 -4.6085 19 1 14.0863 4.0723 -4.5818 20 1 14.4584 2.8802 -2.5031 21 7 6.0007 -1.2880 -0.0073 22 6 4.7658 -1.7616 -0.0095 23 8 4.5416 -3.0973 -0.0157 24 6 3.6814 -0.8502 -0.0046 25 6 2.2501 -1.0894 -0.0058 26 6 1.6586 -2.4754 -0.0138 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 0.8927 -0.5091 29 1 -0.3632 -0.8874 -0.5186 30 1 7.7226 1.4515 0.5209 31 1 8.2926 -0.2347 0.5120 32 1 8.0875 -0.2908 -1.9586 33 1 7.5175 1.3955 -1.9495 34 1 8.9577 2.0370 -4.1453 35 1 10.2489 0.9212 -4.6511 36 1 8.8336 0.3022 -3.7670 37 1 11.5378 3.4550 -5.3727 38 1 4.4760 -3.4811 -0.9008 39 1 1.5160 -2.8037 -1.0433 40 1 2.3346 -3.1618 0.4962 41 1 0.6975 -2.4632 0.5001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263645888.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:06 Heat of formation + Delta-G solvation = -10.215049 kcal Electronic energy + Delta-G solvation = -25608.277229 eV Core-core repulsion = 21808.300314 eV Total energy + Delta-G solvation = -3799.976915 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.46026 -38.56988 -37.93924 -37.60731 -34.76675 -33.59767 -32.95231 -31.63490 -30.98736 -29.54753 -27.14618 -26.21253 -25.34518 -24.35407 -23.67145 -22.20477 -19.74974 -19.22654 -18.66021 -18.37615 -17.17164 -16.86762 -16.59226 -15.85853 -15.68379 -14.90096 -14.80100 -14.52023 -14.31127 -13.99784 -13.90535 -13.68696 -13.24207 -13.15512 -12.96016 -12.87755 -12.51706 -12.28091 -12.20996 -11.87457 -11.56113 -11.40748 -11.28650 -11.16751 -11.16174 -10.83016 -10.77872 -10.70703 -10.61450 -10.31696 -10.18995 -9.44664 -9.06792 -8.97246 -8.38451 -8.25168 -7.62367 -6.28611 -3.84810 0.10977 0.62926 0.83083 1.52695 1.75599 2.98971 3.19320 3.27768 3.33546 3.41444 3.84197 3.94368 4.04616 4.18888 4.25468 4.60162 4.63727 4.82261 4.88473 5.07232 5.09699 5.15216 5.16828 5.23428 5.37792 5.48907 5.50012 5.63339 5.68811 5.77598 6.00832 6.03972 6.08753 6.34820 6.44636 6.51193 6.66638 6.88078 7.01627 7.22047 7.60637 7.89915 8.18320 8.52493 9.22500 9.46397 10.02413 10.76571 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.023128 B = 0.002372 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.382403 B =11803.838575 C =12252.048764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.181 4.181 3 S 0.168 5.832 4 C 0.105 3.895 5 N -0.488 5.488 6 C 0.373 3.627 7 C -0.033 4.033 8 C -0.119 4.119 9 C 0.451 3.549 10 O -0.589 6.589 11 N -0.447 5.447 12 C 0.112 3.888 13 C -0.305 4.305 14 H 0.098 0.902 15 C 0.029 3.971 16 N -0.883 5.883 17 Si 0.926 3.074 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.269 1.269 21 N -0.530 5.530 22 C 0.417 3.583 23 O -0.469 6.469 24 C -0.202 4.202 25 C -0.066 4.066 26 C -0.101 4.101 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.024 0.976 37 H 0.267 0.733 38 H 0.409 0.591 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.339 -9.784 4.257 26.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.297 4.297 3 S 0.429 5.571 4 C -0.147 4.147 5 N -0.206 5.206 6 C 0.103 3.897 7 C -0.073 4.073 8 C -0.161 4.161 9 C 0.239 3.761 10 O -0.474 6.474 11 N -0.166 5.166 12 C -0.032 4.032 13 C -0.433 4.433 14 H 0.116 0.884 15 C -0.174 4.174 16 N -0.523 5.523 17 Si 0.753 3.247 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.193 1.193 21 N -0.255 5.255 22 C 0.219 3.781 23 O -0.277 6.277 24 C -0.217 4.217 25 C -0.078 4.078 26 C -0.160 4.160 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.043 0.957 37 H 0.077 0.923 38 H 0.269 0.731 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -23.503 -7.646 5.162 25.249 hybrid contribution 0.332 -1.608 -0.896 1.870 sum -23.171 -9.254 4.266 25.313 Atomic orbital electron populations 1.20397 0.86875 1.03599 1.03190 1.23894 1.00528 0.95690 1.09606 1.84338 0.90330 1.05397 1.77071 1.23862 0.97622 0.93865 0.99325 1.67990 0.97305 1.38911 1.16388 1.23313 0.96393 0.82426 0.87532 1.20255 0.84618 1.03646 0.98754 1.21442 0.96699 1.02331 0.95607 1.19875 0.87236 0.84401 0.84558 1.90519 1.68254 1.57688 1.30917 1.43558 1.12153 1.56944 1.03936 1.21470 0.96373 0.97803 0.87528 1.19662 0.86237 1.32771 1.04620 0.88387 1.25354 1.00104 0.95384 0.96547 1.69995 1.34429 1.35586 1.12269 0.85923 0.82545 0.77579 0.78640 1.20422 1.20998 1.19338 1.67786 1.22499 1.17841 1.17382 1.19255 0.86142 0.84235 0.88431 1.84654 1.92508 1.16313 1.34237 1.20625 0.94972 0.94375 1.11706 1.19232 0.89423 0.96890 1.02241 1.20659 1.01126 0.91562 1.02673 0.90275 0.90824 0.90051 0.87989 0.88016 0.90242 0.89976 0.93027 0.90722 0.95722 0.92308 0.73063 0.90868 0.89916 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 9.66 36.01 0.35 -0.07 16 2 C -0.18 -1.58 6.38 -36.21 -0.23 -1.81 16 3 S 0.17 1.81 23.20 -107.50 -2.49 -0.68 16 4 C 0.11 1.50 7.69 -16.08 -0.12 1.37 16 5 N -0.49 -8.06 10.36 -9.46 -0.10 -8.16 16 6 C 0.37 6.20 6.89 -157.35 -1.08 5.12 16 7 C -0.03 -0.59 4.93 -27.89 -0.14 -0.73 16 8 C -0.12 -2.28 4.29 -27.88 -0.12 -2.40 16 9 C 0.45 11.17 7.63 -10.99 -0.08 11.08 16 10 O -0.59 -16.37 15.70 5.55 0.09 -16.28 16 11 N -0.45 -11.71 3.01 -122.19 -0.37 -12.07 16 12 C 0.11 2.55 8.44 59.85 0.51 3.06 16 13 C -0.30 -8.64 9.24 -14.93 -0.14 -8.78 16 14 H 0.10 2.90 7.45 -52.48 -0.39 2.51 16 15 C 0.03 0.78 5.04 -17.47 -0.09 0.69 16 16 N -0.88 -23.96 10.83 55.50 0.60 -23.35 16 17 Si 0.93 21.05 29.57 -169.99 -5.03 16.03 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 21 N -0.53 -8.29 10.31 -10.37 -0.11 -8.40 16 22 C 0.42 5.42 7.90 -16.06 -0.13 5.30 16 23 O -0.47 -4.50 11.50 -18.03 -0.21 -4.70 16 24 C -0.20 -2.54 6.05 -105.28 -0.64 -3.18 16 25 C -0.07 -0.63 5.96 -103.80 -0.62 -1.25 16 26 C -0.10 -0.64 9.15 36.00 0.33 -0.31 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.08 0.31 7.19 -51.92 -0.37 -0.07 16 30 H 0.10 1.88 8.10 -51.93 -0.42 1.46 16 31 H 0.10 1.83 8.10 -51.93 -0.42 1.41 16 32 H 0.08 1.40 7.41 -51.93 -0.38 1.01 16 33 H 0.08 1.53 8.11 -51.93 -0.42 1.10 16 34 H 0.05 1.21 7.83 -51.93 -0.41 0.80 16 35 H 0.07 1.79 6.80 -51.94 -0.35 1.43 16 36 H 0.02 0.47 6.61 -51.93 -0.34 0.12 16 37 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 38 H 0.41 1.86 9.06 45.56 0.41 2.27 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.56 6.49 -51.93 -0.34 0.22 16 41 H 0.07 0.34 7.15 -51.93 -0.37 -0.03 16 LS Contribution 358.10 15.07 5.40 5.40 Total: -1.00 -34.48 358.10 -8.64 -43.11 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -4.21 Total: 1.02 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -2.21 Total: 8.09 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.03 Total: -51.98 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.12 Total: -20.98 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.03 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.49 Total: -0.68 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.48 -8.64 -43.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263645888.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.896 kcal (2) G-P(sol) polarization free energy of solvation -34.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds