Wall clock time and date at job start Tue Mar 31 2020 18:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 S 1.75358 * 124.29141 * 2 1 4 4 C 1.75746 * 92.18911 * 179.91487 * 3 2 1 5 5 N 1.33849 * 131.29149 * 180.02562 * 4 3 2 6 6 C 1.31268 * 120.99450 * 180.35281 * 5 4 3 7 7 C 1.50692 * 118.92305 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.47064 * 269.97791 * 7 6 5 9 9 C 1.50701 * 109.47426 * 180.02562 * 8 7 6 10 10 O 1.21293 * 119.99991 * 359.97438 * 9 8 7 11 11 N 1.34770 * 119.99919 * 180.02562 * 9 8 7 12 12 C 1.46503 * 120.00621 * 359.97438 * 11 9 8 13 13 C 1.37099 * 120.00037 * 179.97438 * 11 9 8 14 14 H 1.08007 * 119.99811 * 24.39377 * 13 11 9 15 15 C 1.38953 * 120.00130 * 204.39587 * 13 11 9 16 16 N 1.31410 * 120.00260 * 12.63813 * 15 13 11 17 17 Si 1.86800 * 119.99753 * 192.63522 * 15 13 11 18 18 H 1.48509 * 109.46873 * 90.00335 * 17 15 13 19 19 H 1.48499 * 109.47075 * 209.99725 * 17 15 13 20 20 H 1.48497 * 109.47380 * 330.00339 * 17 15 13 21 21 N 1.32136 * 122.15275 * 359.97438 * 6 5 4 22 22 C 1.32265 * 121.22537 * 0.02562 * 21 6 5 23 23 O 1.35445 * 120.50757 * 180.02562 * 22 21 6 24 24 C 1.39814 * 109.61083 * 0.34633 * 4 3 2 25 25 C 1.31864 * 124.29635 * 180.30596 * 2 1 3 26 26 C 1.50697 * 122.59625 * 0.02562 * 25 2 1 27 27 H 1.08999 * 109.46752 * 269.69008 * 1 2 3 28 28 H 1.08998 * 109.47024 * 29.69873 * 1 2 3 29 29 H 1.09009 * 109.46378 * 149.69840 * 1 2 3 30 30 H 1.08999 * 109.47733 * 29.97361 * 7 6 5 31 31 H 1.09005 * 109.47372 * 149.98023 * 7 6 5 32 32 H 1.09005 * 109.46896 * 300.00460 * 8 7 6 33 33 H 1.09005 * 109.46837 * 59.99904 * 8 7 6 34 34 H 1.08996 * 109.46964 * 85.85546 * 12 11 9 35 35 H 1.08988 * 109.47529 * 205.86621 * 12 11 9 36 36 H 1.09002 * 109.46468 * 325.86797 * 12 11 9 37 37 H 0.96993 * 119.99851 * 179.97438 * 16 15 13 38 38 H 0.96701 * 114.00377 * 269.97323 * 23 22 21 39 39 H 1.08997 * 109.47657 * 89.97522 * 26 25 2 40 40 H 1.08999 * 109.46963 * 209.97992 * 26 25 2 41 41 H 1.09001 * 109.46803 * 329.97673 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4950 1.4488 0.0000 4 6 3.9838 0.5148 0.0026 5 7 5.2664 0.8973 0.0043 6 6 6.2358 0.0122 -0.0008 7 6 7.6633 0.4948 0.0020 8 6 8.1467 0.6659 -1.4396 9 6 9.5745 1.1479 -1.4369 10 8 10.1489 1.3365 -0.3854 11 7 10.2128 1.3704 -2.6028 12 6 9.5189 1.1432 -3.8729 13 6 11.5116 1.8094 -2.6004 14 1 12.1469 1.6115 -1.7496 15 6 12.0106 2.5090 -3.6923 16 7 11.1894 2.9663 -4.6107 17 14 13.8487 2.7996 -3.8547 18 1 14.4626 1.6769 -4.6085 19 1 14.0863 4.0723 -4.5818 20 1 14.4584 2.8802 -2.5031 21 7 6.0007 -1.2880 -0.0073 22 6 4.7658 -1.7616 -0.0095 23 8 4.5416 -3.0973 -0.0157 24 6 3.6814 -0.8502 -0.0046 25 6 2.2501 -1.0894 -0.0058 26 6 1.6586 -2.4754 -0.0138 27 1 -0.3633 -0.0056 1.0277 28 1 -0.3633 0.8927 -0.5091 29 1 -0.3632 -0.8874 -0.5186 30 1 7.7226 1.4515 0.5209 31 1 8.2926 -0.2347 0.5120 32 1 8.0875 -0.2908 -1.9586 33 1 7.5175 1.3955 -1.9495 34 1 8.9577 2.0370 -4.1453 35 1 10.2489 0.9212 -4.6511 36 1 8.8336 0.3022 -3.7670 37 1 11.5378 3.4550 -5.3727 38 1 4.4760 -3.4811 -0.9008 39 1 1.5160 -2.8037 -1.0433 40 1 2.3346 -3.1618 0.4962 41 1 0.6975 -2.4632 0.5001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263645888.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:06 Heat of formation + Delta-G solvation = -35.589881 kcal Electronic energy + Delta-G solvation = -25609.377565 eV Core-core repulsion = 21808.300314 eV Total energy + Delta-G solvation = -3801.077251 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.47646 -40.43594 -38.90941 -38.38491 -36.75357 -34.81861 -34.14901 -33.59365 -32.01498 -30.18203 -28.58196 -27.72246 -26.70496 -25.76974 -24.85456 -23.43774 -20.69308 -20.47747 -20.04421 -19.35303 -18.90105 -18.08543 -17.95316 -17.27971 -16.68408 -16.61957 -16.33257 -15.95860 -15.57829 -15.00177 -14.92012 -14.66954 -14.59932 -14.27122 -13.85084 -13.60645 -13.57193 -13.46675 -13.31480 -13.19768 -13.10403 -13.04855 -12.81948 -12.64775 -12.51728 -12.29920 -12.13738 -12.09217 -11.87615 -11.69913 -11.61402 -11.00399 -10.52143 -10.40581 -9.93422 -9.68234 -9.09863 -8.34479 -5.99831 -0.84807 -0.38625 -0.05415 0.74644 0.96678 1.37858 1.41136 1.53892 2.00197 2.05024 2.27570 2.34594 2.67989 3.08004 3.15063 3.25593 3.34750 3.65519 3.83147 3.99657 4.12604 4.14812 4.28819 4.34050 4.46595 4.67027 4.70757 4.75905 4.79278 4.85730 4.86855 4.89462 5.01692 5.07948 5.13829 5.18122 5.33333 5.44953 5.48846 5.62569 6.09975 6.37581 6.47279 6.80315 7.15493 7.45000 8.01079 8.69095 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.023128 B = 0.002372 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.382403 B =11803.838575 C =12252.048764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.165 4.165 3 S 0.172 5.828 4 C 0.068 3.932 5 N -0.512 5.512 6 C 0.359 3.641 7 C -0.022 4.022 8 C -0.100 4.100 9 C 0.442 3.558 10 O -0.628 6.628 11 N -0.464 5.464 12 C 0.122 3.878 13 C -0.344 4.344 14 H 0.072 0.928 15 C -0.004 4.004 16 N -0.898 5.898 17 Si 0.992 3.008 18 H -0.264 1.264 19 H -0.274 1.274 20 H -0.276 1.276 21 N -0.551 5.551 22 C 0.419 3.581 23 O -0.463 6.463 24 C -0.197 4.197 25 C -0.079 4.079 26 C -0.097 4.097 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.042 0.958 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.274 0.726 38 H 0.431 0.569 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.150 -11.144 3.373 29.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.281 4.281 3 S 0.433 5.567 4 C -0.182 4.182 5 N -0.230 5.230 6 C 0.088 3.912 7 C -0.062 4.062 8 C -0.141 4.141 9 C 0.232 3.768 10 O -0.516 6.516 11 N -0.182 5.182 12 C -0.021 4.021 13 C -0.472 4.472 14 H 0.090 0.910 15 C -0.206 4.206 16 N -0.536 5.536 17 Si 0.815 3.185 18 H -0.189 1.189 19 H -0.199 1.199 20 H -0.201 1.201 21 N -0.277 5.277 22 C 0.222 3.778 23 O -0.275 6.275 24 C -0.213 4.213 25 C -0.090 4.090 26 C -0.156 4.156 27 H 0.112 0.888 28 H 0.101 0.899 29 H 0.122 0.878 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.108 0.892 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.296 0.704 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -26.363 -9.029 4.235 28.186 hybrid contribution 1.003 -1.206 -0.600 1.680 sum -25.360 -10.235 3.635 27.588 Atomic orbital electron populations 1.20610 0.83860 1.05153 1.04605 1.24409 1.02120 0.94067 1.07494 1.84307 0.89227 1.06787 1.76338 1.24343 0.97592 0.95658 1.00642 1.67884 0.98475 1.39471 1.17182 1.22746 0.95602 0.83079 0.89746 1.19971 0.86055 1.02690 0.97501 1.21269 0.92674 1.03099 0.97073 1.20782 0.89043 0.83368 0.83647 1.90478 1.69738 1.59131 1.32265 1.43843 1.11987 1.57021 1.05391 1.21424 0.96138 0.98829 0.85756 1.19637 0.87572 1.35083 1.04910 0.90964 1.26136 1.04430 0.94396 0.95635 1.70067 1.36072 1.35126 1.12376 0.84963 0.77093 0.78159 0.78292 1.18884 1.19861 1.20070 1.67713 1.24116 1.17318 1.18571 1.19362 0.85562 0.85416 0.87470 1.84629 1.92194 1.14485 1.36159 1.20968 0.96578 0.93565 1.10172 1.19529 0.87807 0.98871 1.02786 1.20735 1.01631 0.89131 1.04080 0.88767 0.89895 0.87823 0.89575 0.88901 0.88167 0.89200 0.93967 0.92166 0.91786 0.91680 0.70428 0.89032 0.90462 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 9.66 71.24 0.69 0.18 16 2 C -0.16 -2.39 6.38 24.87 0.16 -2.23 16 3 S 0.17 3.52 23.20 -56.49 -1.31 2.21 16 4 C 0.07 1.92 7.69 84.77 0.65 2.57 16 5 N -0.51 -17.31 10.36 -183.85 -1.90 -19.21 16 6 C 0.36 12.23 6.89 138.80 0.96 13.19 16 7 C -0.02 -0.83 4.93 29.85 0.15 -0.69 16 8 C -0.10 -3.90 4.29 29.85 0.13 -3.77 16 9 C 0.44 22.61 7.63 87.66 0.67 23.28 16 10 O -0.63 -36.70 15.70 -3.07 -0.05 -36.75 16 11 N -0.46 -24.92 3.01 -658.90 -1.98 -26.91 16 12 C 0.12 5.55 8.44 127.77 1.08 6.63 16 13 C -0.34 -20.15 9.24 84.04 0.78 -19.38 16 14 H 0.07 4.50 7.45 -2.91 -0.02 4.48 16 15 C 0.00 -0.24 5.04 84.93 0.43 0.19 16 16 N -0.90 -48.79 10.83 21.66 0.23 -48.55 16 17 Si 0.99 43.41 29.57 68.60 2.03 45.44 16 18 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 19 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 21 N -0.55 -17.25 10.31 -299.70 -3.09 -20.34 16 22 C 0.42 10.48 7.90 85.47 0.68 11.16 16 23 O -0.46 -7.95 11.50 -87.42 -1.01 -8.95 16 24 C -0.20 -4.71 6.05 -20.29 -0.12 -4.83 16 25 C -0.08 -1.28 5.96 -18.91 -0.11 -1.39 16 26 C -0.10 -0.85 9.15 71.23 0.65 -0.19 16 27 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.10 0.26 7.19 -2.38 -0.02 0.24 16 30 H 0.09 3.40 8.10 -2.39 -0.02 3.38 16 31 H 0.09 3.54 8.10 -2.38 -0.02 3.52 16 32 H 0.10 3.47 7.41 -2.38 -0.02 3.46 16 33 H 0.09 3.37 8.11 -2.38 -0.02 3.35 16 34 H 0.04 1.98 7.83 -2.39 -0.02 1.96 16 35 H 0.06 2.89 6.80 -2.39 -0.02 2.87 16 36 H 0.06 2.36 6.61 -2.39 -0.02 2.35 16 37 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 38 H 0.43 2.82 9.06 -74.06 -0.67 2.15 16 39 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.08 0.80 6.49 -2.39 -0.02 0.78 16 41 H 0.09 0.45 7.15 -2.39 -0.02 0.43 16 Total: -1.00 -77.73 358.10 0.12 -77.61 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.42 Total: 10.75 kcal Atomic # 6 Polarization: 17.93 SS G_CDS: 6.77 Total: 24.71 kcal Atomic # 7 Polarization: -108.27 SS G_CDS: -6.74 Total: -115.02 kcal Atomic # 8 Polarization: -44.65 SS G_CDS: -1.05 Total: -45.70 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.31 Total: 2.21 kcal Total: -77.73 0.12 -77.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263645888.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.020 kcal (2) G-P(sol) polarization free energy of solvation -77.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds