Wall clock time and date at job start Tue Mar 31 2020 19:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47000 * 2 1 4 4 C 1.50699 * 109.47104 * 120.00643 * 2 1 3 5 5 H 1.07996 * 119.99894 * 119.99857 * 4 2 1 6 6 C 1.37873 * 119.99751 * 299.99369 * 4 2 1 7 7 N 1.31514 * 120.00289 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00041 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47091 * 60.00271 * 8 6 4 10 10 H 1.48500 * 109.47497 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47132 * 300.00542 * 8 6 4 12 12 N 1.46499 * 109.46841 * 240.00373 * 2 1 3 13 13 S 1.65602 * 120.00006 * 95.00023 * 12 2 1 14 14 O 1.42101 * 106.40205 * 311.45985 * 13 12 2 15 15 O 1.42099 * 106.40300 * 178.54045 * 13 12 2 16 16 C 1.76198 * 107.21766 * 64.99925 * 13 12 2 17 17 C 1.39877 * 126.03859 * 269.99777 * 16 13 12 18 18 N 1.30837 * 108.19912 * 179.74018 * 17 16 13 19 19 N 1.40082 * 108.20736 * 0.40649 * 18 17 16 20 20 C 1.46503 * 126.03945 * 179.85351 * 19 18 17 21 21 C 1.50706 * 109.46722 * 304.68843 * 20 19 18 22 22 C 1.38238 * 119.99727 * 90.00230 * 21 20 19 23 23 C 1.38234 * 119.99693 * 180.02562 * 22 21 20 24 24 C 1.38234 * 120.00240 * 359.97438 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.26327 * 24 23 22 26 26 C 1.38234 * 120.00207 * 270.01721 * 21 20 19 27 27 C 1.34950 * 107.92585 * 359.59329 * 19 18 17 28 28 H 1.08996 * 109.47000 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46732 * 299.99632 * 1 2 3 30 30 H 1.08998 * 109.46925 * 59.99387 * 1 2 3 31 31 H 0.97000 * 120.00096 * 179.97438 * 7 6 4 32 32 H 0.96999 * 120.00337 * 275.00242 * 12 2 1 33 33 H 1.07991 * 125.89760 * 0.02562 * 17 16 13 34 34 H 1.09000 * 109.47286 * 184.69321 * 20 19 18 35 35 H 1.08993 * 109.47262 * 64.68659 * 20 19 18 36 36 H 1.07997 * 119.99846 * 359.97438 * 22 21 20 37 37 H 1.07999 * 119.99751 * 179.97438 * 23 22 21 38 38 H 1.08002 * 119.99744 * 179.97438 * 24 23 22 39 39 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 40 40 H 1.07999 * 120.00008 * 0.02562 * 26 21 20 41 41 H 1.08001 * 126.12878 * 180.22337 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4826 7 7 0.9430 0.8295 2.6034 8 14 2.3226 -1.1198 4.0078 9 1 3.8076 -1.1193 4.0076 10 1 1.8271 -0.4203 5.2204 11 1 1.8282 -2.5201 4.0080 12 7 2.0183 -0.6905 -1.1962 13 16 2.4122 0.1773 -2.5505 14 8 1.3246 1.0595 -2.7921 15 8 2.8775 -0.7632 -3.5086 16 6 3.7928 1.1911 -2.1372 17 6 3.7348 2.4894 -1.6199 18 7 4.9597 2.9116 -1.4374 19 7 5.8371 1.8973 -1.8420 20 6 7.3004 1.9589 -1.8073 21 6 7.7707 3.1672 -2.5755 22 6 7.9350 4.3772 -1.9276 23 6 8.3658 5.4856 -2.6324 24 6 8.6328 5.3839 -3.9849 25 6 8.4637 4.1751 -4.6338 26 6 8.0373 3.0656 -3.9281 27 6 5.0964 0.8512 -2.2641 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 0.7084 1.1607 3.4845 32 1 2.1109 -1.6561 -1.1951 33 1 2.8346 3.0453 -1.4038 34 1 7.7129 1.0573 -2.2601 35 1 7.6365 2.0325 -0.7731 36 1 7.7260 4.4567 -0.8710 37 1 8.4938 6.4311 -2.1263 38 1 8.9690 6.2501 -4.5355 39 1 8.6681 4.0967 -5.6913 40 1 7.9083 2.1204 -4.4344 41 1 5.4760 -0.0887 -2.6367 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263739046.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:52 Heat of formation + Delta-G solvation = 26.336868 kcal Electronic energy + Delta-G solvation = -26206.009880 eV Core-core repulsion = 22407.617974 eV Total energy + Delta-G solvation = -3798.391905 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.14303 -39.38468 -36.54052 -35.34343 -35.13961 -34.32338 -32.14391 -31.19038 -30.95296 -30.06039 -28.19132 -26.53261 -25.17672 -22.91174 -22.23272 -21.67574 -20.93716 -20.64652 -18.74816 -17.79669 -17.19555 -16.97781 -16.10175 -15.81933 -15.66472 -15.28502 -15.12249 -14.66208 -14.58941 -14.24987 -13.69558 -13.53095 -13.29430 -12.91237 -12.82885 -12.62170 -12.55772 -12.13386 -11.67366 -11.61095 -11.50200 -11.37348 -11.32046 -11.16055 -11.11590 -10.96127 -10.56730 -10.34720 -10.22817 -10.07515 -9.41570 -9.21245 -9.17601 -9.12023 -8.95168 -8.57944 -8.23380 -6.10870 -4.18796 0.90535 1.14212 1.22340 1.78359 2.53678 2.64244 3.25301 3.30989 3.32296 3.56012 3.94515 4.18524 4.36292 4.40371 4.48627 4.65801 4.71146 4.73782 4.83138 4.96887 5.04199 5.20707 5.22643 5.29197 5.35114 5.62904 5.68543 5.76433 5.86235 6.14862 6.22945 6.26390 6.43124 6.64143 6.69011 6.88145 6.90702 7.12087 7.16237 7.62442 7.64682 7.75697 7.89618 8.08682 8.32606 8.84176 9.47186 10.94637 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013220 B = 0.003451 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.528817 B = 8111.666723 C = 9355.410244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.277 3.723 3 H 0.042 0.958 4 C -0.525 4.525 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.276 1.276 12 N -1.102 6.102 13 S 2.720 3.280 14 O -0.966 6.966 15 O -0.992 6.992 16 C -0.799 4.799 17 C 0.141 3.859 18 N -0.289 5.289 19 N -0.362 5.362 20 C 0.168 3.832 21 C -0.110 4.110 22 C -0.081 4.081 23 C -0.124 4.124 24 C -0.111 4.111 25 C -0.125 4.125 26 C -0.101 4.101 27 C 0.172 3.828 28 H 0.031 0.969 29 H 0.090 0.910 30 H 0.026 0.974 31 H 0.264 0.736 32 H 0.407 0.593 33 H 0.196 0.804 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.326 4.714 -10.394 19.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.173 3.827 3 H 0.059 0.941 4 C -0.565 4.565 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.726 3.274 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.863 5.863 13 S 2.807 3.193 14 O -0.956 6.956 15 O -0.982 6.982 16 C -0.897 4.897 17 C -0.049 4.049 18 N -0.108 5.108 19 N -0.139 5.139 20 C 0.047 3.953 21 C -0.110 4.110 22 C -0.100 4.100 23 C -0.142 4.142 24 C -0.129 4.129 25 C -0.143 4.143 26 C -0.119 4.119 27 C 0.020 3.980 28 H 0.050 0.950 29 H 0.109 0.891 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.240 0.760 33 H 0.213 0.787 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 15.757 6.032 -10.619 19.936 hybrid contribution 0.422 -1.236 1.204 1.777 sum 16.179 4.796 -9.415 19.324 Atomic orbital electron populations 1.22242 0.98212 0.99875 1.01493 1.18466 0.91288 0.92156 0.80775 0.94053 1.21260 1.31957 1.13136 0.90147 0.91993 1.24902 0.94916 0.95015 0.98970 1.69866 1.35994 1.22550 1.23932 0.86572 0.79025 0.79758 0.82074 1.20412 1.21199 1.20165 1.55573 1.80978 1.18276 1.31444 1.00856 0.73163 0.72814 0.72470 1.93544 1.50610 1.67154 1.84277 1.93489 1.82900 1.62099 1.59724 1.31787 1.15256 1.13046 1.29578 1.23550 0.96194 0.92157 0.92982 1.77384 0.99771 1.11362 1.22255 1.49154 1.06150 1.11311 1.47316 1.20691 0.74784 0.97746 1.02032 1.19780 1.01643 0.95211 0.94409 1.21093 0.96560 0.91913 1.00410 1.21179 0.99813 0.98625 0.94550 1.21227 0.99223 0.97670 0.94808 1.21124 1.00318 0.92950 0.99930 1.21073 0.98402 0.99097 0.93341 1.22371 0.90071 0.93061 0.92527 0.95003 0.89104 0.95470 0.92563 0.75954 0.78703 0.87422 0.88328 0.85597 0.85794 0.85985 0.85874 0.85976 0.79572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 9.29 37.16 0.35 -3.46 16 2 C 0.28 6.60 2.76 -69.08 -0.19 6.41 16 3 H 0.04 1.04 7.65 -51.93 -0.40 0.64 16 4 C -0.53 -13.49 8.76 -34.44 -0.30 -13.79 16 5 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.12 11.32 55.43 0.63 -23.49 16 8 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 N -1.10 -21.92 5.46 -5.88 -0.03 -21.95 16 13 S 2.72 50.96 5.79 -107.50 -0.62 50.33 16 14 O -0.97 -20.68 17.13 -57.17 -0.98 -21.66 16 15 O -0.99 -19.06 17.85 -57.17 -1.02 -20.08 16 16 C -0.80 -13.84 6.00 -40.01 -0.24 -14.08 16 17 C 0.14 2.51 11.62 -17.36 -0.20 2.31 16 18 N -0.29 -4.94 12.41 30.62 0.38 -4.56 16 19 N -0.36 -5.14 3.67 -62.54 -0.23 -5.37 16 20 C 0.17 1.69 6.64 -5.19 -0.03 1.65 16 21 C -0.11 -1.15 5.32 -104.62 -0.56 -1.70 16 22 C -0.08 -0.85 9.70 -39.58 -0.38 -1.24 16 23 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 24 C -0.11 -0.97 10.05 -39.58 -0.40 -1.37 16 25 C -0.13 -1.12 10.05 -39.58 -0.40 -1.51 16 26 C -0.10 -0.97 9.70 -39.58 -0.38 -1.35 16 27 C 0.17 2.50 11.19 -17.22 -0.19 2.31 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 30 H 0.03 0.61 7.64 -51.93 -0.40 0.22 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.41 7.32 8.83 -34.47 -0.30 7.02 16 33 H 0.20 3.28 8.06 -52.49 -0.42 2.85 16 34 H 0.11 0.73 8.01 -51.93 -0.42 0.31 16 35 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 36 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 41 H 0.19 2.01 8.06 -52.49 -0.42 1.58 16 LS Contribution 367.86 15.07 5.54 5.54 Total: -1.00 -33.64 367.86 -9.96 -43.59 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.18 Total: 8.03 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: -3.43 Total: -25.78 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.75 Total: -55.38 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -2.00 Total: -41.74 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 50.96 SS G_CDS: -0.62 Total: 50.33 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.64 -9.96 -43.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263739046.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.931 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds