Wall clock time and date at job start Tue Mar 31 2020 19:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08996 * 109.47000 * 2 1 4 4 C 1.50699 * 109.47104 * 120.00643 * 2 1 3 5 5 H 1.07996 * 119.99894 * 119.99857 * 4 2 1 6 6 C 1.37873 * 119.99751 * 299.99369 * 4 2 1 7 7 N 1.31514 * 120.00289 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00041 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47091 * 60.00271 * 8 6 4 10 10 H 1.48500 * 109.47497 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47132 * 300.00542 * 8 6 4 12 12 N 1.46499 * 109.46841 * 240.00373 * 2 1 3 13 13 S 1.65602 * 120.00006 * 95.00023 * 12 2 1 14 14 O 1.42101 * 106.40205 * 311.45985 * 13 12 2 15 15 O 1.42099 * 106.40300 * 178.54045 * 13 12 2 16 16 C 1.76198 * 107.21766 * 64.99925 * 13 12 2 17 17 C 1.39877 * 126.03859 * 269.99777 * 16 13 12 18 18 N 1.30837 * 108.19912 * 179.74018 * 17 16 13 19 19 N 1.40082 * 108.20736 * 0.40649 * 18 17 16 20 20 C 1.46503 * 126.03945 * 179.85351 * 19 18 17 21 21 C 1.50706 * 109.46722 * 304.68843 * 20 19 18 22 22 C 1.38238 * 119.99727 * 90.00230 * 21 20 19 23 23 C 1.38234 * 119.99693 * 180.02562 * 22 21 20 24 24 C 1.38234 * 120.00240 * 359.97438 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.26327 * 24 23 22 26 26 C 1.38234 * 120.00207 * 270.01721 * 21 20 19 27 27 C 1.34950 * 107.92585 * 359.59329 * 19 18 17 28 28 H 1.08996 * 109.47000 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46732 * 299.99632 * 1 2 3 30 30 H 1.08998 * 109.46925 * 59.99387 * 1 2 3 31 31 H 0.97000 * 120.00096 * 179.97438 * 7 6 4 32 32 H 0.96999 * 120.00337 * 275.00242 * 12 2 1 33 33 H 1.07991 * 125.89760 * 0.02562 * 17 16 13 34 34 H 1.09000 * 109.47286 * 184.69321 * 20 19 18 35 35 H 1.08993 * 109.47262 * 64.68659 * 20 19 18 36 36 H 1.07997 * 119.99846 * 359.97438 * 22 21 20 37 37 H 1.07999 * 119.99751 * 179.97438 * 23 22 21 38 38 H 1.08002 * 119.99744 * 179.97438 * 24 23 22 39 39 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 40 40 H 1.07999 * 120.00008 * 0.02562 * 26 21 20 41 41 H 1.08001 * 126.12878 * 180.22337 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6994 -0.2395 2.4826 7 7 0.9430 0.8295 2.6034 8 14 2.3226 -1.1198 4.0078 9 1 3.8076 -1.1193 4.0076 10 1 1.8271 -0.4203 5.2204 11 1 1.8282 -2.5201 4.0080 12 7 2.0183 -0.6905 -1.1962 13 16 2.4122 0.1773 -2.5505 14 8 1.3246 1.0595 -2.7921 15 8 2.8775 -0.7632 -3.5086 16 6 3.7928 1.1911 -2.1372 17 6 3.7348 2.4894 -1.6199 18 7 4.9597 2.9116 -1.4374 19 7 5.8371 1.8973 -1.8420 20 6 7.3004 1.9589 -1.8073 21 6 7.7707 3.1672 -2.5755 22 6 7.9350 4.3772 -1.9276 23 6 8.3658 5.4856 -2.6324 24 6 8.6328 5.3839 -3.9849 25 6 8.4637 4.1751 -4.6338 26 6 8.0373 3.0656 -3.9281 27 6 5.0964 0.8512 -2.2641 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 0.7084 1.1607 3.4845 32 1 2.1109 -1.6561 -1.1951 33 1 2.8346 3.0453 -1.4038 34 1 7.7129 1.0573 -2.2601 35 1 7.6365 2.0325 -0.7731 36 1 7.7260 4.4567 -0.8710 37 1 8.4938 6.4311 -2.1263 38 1 8.9690 6.2501 -4.5355 39 1 8.6681 4.0967 -5.6913 40 1 7.9083 2.1204 -4.4344 41 1 5.4760 -0.0887 -2.6367 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263739046.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:52 Heat of formation + Delta-G solvation = 3.715390 kcal Electronic energy + Delta-G solvation = -26206.990821 eV Core-core repulsion = 22407.617974 eV Total energy + Delta-G solvation = -3799.372846 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.31838 -40.10395 -38.12064 -37.14615 -36.72827 -35.23037 -34.04844 -31.97861 -31.84901 -31.23471 -30.03474 -27.42727 -27.17622 -23.63866 -23.17512 -22.91214 -22.71918 -21.71323 -20.21669 -19.18856 -18.72411 -17.84975 -17.69146 -17.07421 -16.73324 -16.68727 -16.25741 -16.09906 -15.64586 -15.39747 -15.21532 -14.44204 -14.36757 -14.13731 -14.03111 -13.95263 -13.59035 -13.53845 -13.40418 -13.15673 -13.01707 -12.90342 -12.77529 -12.65744 -12.36513 -12.19587 -12.14352 -11.96486 -11.94847 -11.67269 -11.04796 -10.60799 -10.54819 -10.25324 -9.98851 -9.88718 -9.84944 -8.09255 -6.23204 -0.27861 0.17639 0.43758 0.62325 1.27986 1.46697 1.47773 1.54430 1.55252 2.37796 2.53652 2.82783 2.99021 3.20557 3.31019 3.53694 3.69589 3.81739 3.95467 4.05622 4.13801 4.21937 4.33292 4.48120 4.53032 4.56912 4.63621 4.68539 4.97631 5.00075 5.07784 5.18672 5.24486 5.31730 5.46989 5.54033 5.54908 5.64248 5.81218 5.83995 6.02126 6.09960 6.17907 6.39992 6.51346 6.88934 7.46157 8.95655 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013220 B = 0.003451 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.528817 B = 8111.666723 C = 9355.410244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.282 3.718 3 H 0.024 0.976 4 C -0.536 4.536 5 H 0.069 0.931 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.958 3.042 9 H -0.273 1.273 10 H -0.288 1.288 11 H -0.269 1.269 12 N -1.101 6.101 13 S 2.742 3.258 14 O -0.998 6.998 15 O -0.993 6.993 16 C -0.821 4.821 17 C 0.120 3.880 18 N -0.308 5.308 19 N -0.352 5.352 20 C 0.158 3.842 21 C -0.123 4.123 22 C -0.101 4.101 23 C -0.135 4.135 24 C -0.116 4.116 25 C -0.133 4.133 26 C -0.109 4.109 27 C 0.183 3.817 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.029 0.971 31 H 0.263 0.737 32 H 0.416 0.584 33 H 0.190 0.810 34 H 0.148 0.852 35 H 0.106 0.894 36 H 0.119 0.881 37 H 0.137 0.863 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.532 3.555 -11.149 21.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.177 3.823 3 H 0.042 0.958 4 C -0.576 4.576 5 H 0.087 0.913 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.784 3.216 9 H -0.199 1.199 10 H -0.214 1.214 11 H -0.194 1.194 12 N -0.861 5.861 13 S 2.831 3.169 14 O -0.988 6.988 15 O -0.983 6.983 16 C -0.922 4.922 17 C -0.069 4.069 18 N -0.127 5.127 19 N -0.129 5.129 20 C 0.039 3.961 21 C -0.124 4.124 22 C -0.120 4.120 23 C -0.153 4.153 24 C -0.134 4.134 25 C -0.151 4.151 26 C -0.128 4.128 27 C 0.029 3.971 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.251 0.749 33 H 0.207 0.793 34 H 0.166 0.834 35 H 0.124 0.876 36 H 0.138 0.862 37 H 0.155 0.845 38 H 0.162 0.838 39 H 0.162 0.838 40 H 0.158 0.842 41 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 17.962 4.849 -11.386 21.813 hybrid contribution -0.143 -0.808 1.363 1.591 sum 17.820 4.041 -10.023 20.840 Atomic orbital electron populations 1.22158 0.98698 0.99918 1.00566 1.18167 0.90903 0.91517 0.81725 0.95837 1.21601 1.31785 1.13312 0.90889 0.91271 1.25660 0.95174 0.95673 1.01784 1.69999 1.37098 1.23839 1.24369 0.85613 0.78575 0.78811 0.78588 1.19864 1.21396 1.19427 1.55372 1.81389 1.18896 1.30455 0.99980 0.72896 0.72226 0.71788 1.93499 1.52741 1.67840 1.84711 1.93478 1.82934 1.62371 1.59548 1.31479 1.15920 1.12794 1.31981 1.23615 0.96600 0.92812 0.93910 1.77316 0.99840 1.12895 1.22655 1.49469 1.07441 1.10361 1.45640 1.21170 0.72272 0.99584 1.03080 1.19872 1.02343 0.95205 0.94991 1.21232 0.97513 0.92769 1.00452 1.21436 0.99739 0.98961 0.95185 1.21561 0.98544 0.98601 0.94666 1.21479 0.99709 0.92796 1.01089 1.21363 0.98127 1.00196 0.93106 1.22989 0.89095 0.94180 0.90791 0.94379 0.91236 0.95163 0.92727 0.74910 0.79312 0.83426 0.87637 0.86248 0.84509 0.83811 0.83777 0.84247 0.75457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.48 9.29 71.98 0.67 -6.81 16 2 C 0.28 13.52 2.76 44.25 0.12 13.64 16 3 H 0.02 1.22 7.65 -2.39 -0.02 1.20 16 4 C -0.54 -27.30 8.76 25.60 0.22 -27.08 16 5 H 0.07 3.34 7.81 -2.91 -0.02 3.32 16 6 C 0.02 0.90 5.30 84.65 0.45 1.35 16 7 N -0.91 -50.45 11.32 21.45 0.24 -50.20 16 8 Si 0.96 41.41 29.54 68.60 2.03 43.43 16 9 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 10 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 12 N -1.10 -43.19 5.46 -172.52 -0.94 -44.14 16 13 S 2.74 101.25 5.79 -56.49 -0.33 100.92 16 14 O -1.00 -43.27 17.13 -128.00 -2.19 -45.46 16 15 O -0.99 -36.46 17.85 -128.00 -2.28 -38.74 16 16 C -0.82 -27.85 6.00 21.99 0.13 -27.72 16 17 C 0.12 4.35 11.62 85.24 0.99 5.34 16 18 N -0.31 -10.47 12.41 -57.02 -0.71 -11.18 16 19 N -0.35 -9.35 3.67 -351.79 -1.29 -10.64 16 20 C 0.16 2.77 6.64 85.63 0.57 3.34 16 21 C -0.12 -2.37 5.32 -19.86 -0.11 -2.48 16 22 C -0.10 -2.07 9.70 22.27 0.22 -1.85 16 23 C -0.14 -2.42 10.05 22.27 0.22 -2.19 16 24 C -0.12 -1.81 10.05 22.27 0.22 -1.59 16 25 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 26 C -0.11 -1.85 9.70 22.27 0.22 -1.64 16 27 C 0.18 4.89 11.19 83.54 0.93 5.83 16 28 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 30 H 0.03 1.40 7.64 -2.39 -0.02 1.38 16 31 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 32 H 0.42 14.49 8.83 -96.75 -0.85 13.63 16 33 H 0.19 6.76 8.06 -2.92 -0.02 6.74 16 34 H 0.15 1.38 8.01 -2.39 -0.02 1.36 16 35 H 0.11 1.73 8.08 -2.39 -0.02 1.71 16 36 H 0.12 2.47 8.06 -2.91 -0.02 2.45 16 37 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 38 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 39 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 41 H 0.23 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -71.64 367.86 -0.19 -71.83 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 0.20 Total: 27.88 kcal Atomic # 6 Polarization: -48.79 SS G_CDS: 5.09 Total: -43.70 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -2.70 Total: -116.16 kcal Atomic # 8 Polarization: -79.73 SS G_CDS: -4.48 Total: -84.20 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: 101.25 SS G_CDS: -0.33 Total: 100.92 kcal Total: -71.64 -0.19 -71.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263739046.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.546 kcal (2) G-P(sol) polarization free energy of solvation -71.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds