Wall clock time and date at job start Tue Mar 31 2020 19:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09000 * 109.46864 * 2 1 4 4 C 1.50706 * 109.46585 * 240.00196 * 2 1 3 5 5 H 1.08001 * 119.99697 * 239.99589 * 4 2 1 6 6 C 1.37871 * 120.00160 * 60.00307 * 4 2 1 7 7 N 1.31516 * 120.00080 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00069 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47483 * 59.99721 * 8 6 4 10 10 H 1.48506 * 109.47369 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47034 * 299.99255 * 8 6 4 12 12 N 1.46496 * 109.47082 * 120.00436 * 2 1 3 13 13 C 1.46495 * 120.00628 * 59.99938 * 12 2 1 14 14 C 1.34774 * 119.99544 * 239.99775 * 12 2 1 15 15 O 1.21279 * 120.00472 * 0.02562 * 14 12 2 16 16 C 1.50706 * 120.00020 * 180.02562 * 14 12 2 17 17 C 1.52997 * 109.47238 * 180.02562 * 16 14 12 18 18 C 1.50696 * 109.47055 * 179.97438 * 17 16 14 19 19 N 1.30931 * 126.40114 * 89.71552 * 18 17 16 20 20 C 1.35396 * 105.57935 * 179.86433 * 19 18 17 21 21 C 1.47730 * 126.45187 * 180.14824 * 20 19 18 22 22 C 1.34850 * 125.27424 * 179.97438 * 21 20 19 23 23 C 1.37821 * 114.72469 * 179.79337 * 22 21 20 24 24 C 1.33717 * 115.07230 * 0.49889 * 23 22 21 25 25 S 1.75859 * 109.74365 * 359.73332 * 24 23 22 26 26 N 1.31044 * 107.09777 * 0.39910 * 20 19 18 27 27 O 1.21290 * 110.04446 * 359.74733 * 26 20 19 28 28 H 1.09000 * 109.46864 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46503 * 299.99532 * 1 2 3 30 30 H 1.08992 * 109.46921 * 59.99834 * 1 2 3 31 31 H 0.97005 * 120.00259 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47477 * 270.00204 * 13 12 2 33 33 H 1.09004 * 109.46971 * 29.99775 * 13 12 2 34 34 H 1.08993 * 109.47768 * 149.99839 * 13 12 2 35 35 H 1.09001 * 109.46953 * 299.99667 * 16 14 12 36 36 H 1.09000 * 109.47318 * 59.99264 * 16 14 12 37 37 H 1.09001 * 109.46832 * 299.99686 * 17 16 14 38 38 H 1.09004 * 109.47261 * 59.99705 * 17 16 14 39 39 H 1.08007 * 122.63498 * 359.97438 * 22 21 20 40 40 H 1.08007 * 122.46562 * 180.23051 * 23 22 21 41 41 H 1.07994 * 125.12767 * 179.73261 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.8279 -2.5196 -4.0083 10 1 1.8268 -0.4198 -5.2205 11 1 3.8073 -1.1188 -4.0079 12 7 2.0184 -0.6907 1.1961 13 6 1.6646 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0832 15 8 3.0859 1.1256 1.8916 16 6 3.2962 -0.7463 3.3134 17 6 4.1456 0.2156 4.1466 18 6 4.6479 -0.4948 5.3770 19 7 5.7651 -1.1692 5.4832 20 6 5.7964 -1.6225 6.7586 21 6 6.8632 -2.4383 7.3742 22 6 6.8702 -2.8771 8.6493 23 6 7.9737 -3.6271 8.9948 24 6 8.8720 -3.7963 8.0188 25 16 8.3245 -2.9814 6.5597 26 7 4.6998 -1.2060 7.3426 27 8 4.0333 -0.5591 6.5625 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 0.7081 1.1610 -3.4844 32 1 0.7377 -2.1445 1.9993 33 1 1.5296 -2.5969 0.4707 34 1 2.4630 -2.5819 1.9862 35 1 2.4486 -1.0892 3.9069 36 1 3.9018 -1.6025 3.0164 37 1 4.9931 0.5589 3.5534 38 1 3.5395 1.0715 4.4436 39 1 6.0723 -2.6604 9.3443 40 1 8.1054 -4.0438 9.9825 41 1 9.7945 -4.3498 8.1125 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264114124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:56 Heat of formation + Delta-G solvation = 66.748926 kcal Electronic energy + Delta-G solvation = -25182.209212 eV Core-core repulsion = 21385.569705 eV Total energy + Delta-G solvation = -3796.639507 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.72956 -39.26691 -38.29369 -36.16104 -35.52588 -34.45227 -32.91174 -31.55885 -29.84912 -29.31636 -26.25982 -25.66634 -25.42212 -25.19653 -23.68185 -22.22019 -20.88810 -19.31191 -18.71405 -18.51604 -18.06307 -16.98814 -16.67208 -16.28445 -15.94708 -15.49557 -15.37635 -14.48818 -14.24243 -14.11971 -13.77089 -13.53819 -13.10987 -13.08605 -12.87680 -12.60376 -12.48774 -12.32900 -12.19435 -11.99141 -11.63059 -11.50406 -11.40740 -11.23354 -11.09822 -11.05473 -10.85846 -10.72216 -10.47329 -10.28888 -10.18689 -9.23733 -9.05306 -8.95275 -8.90477 -8.44823 -7.65662 -6.09543 -4.17816 0.10488 1.02899 1.05833 1.55595 1.91001 2.55883 2.58308 3.17355 3.25550 3.27438 3.32115 3.34750 3.79708 3.96107 4.37708 4.58513 4.64781 4.79578 4.94193 5.02166 5.10132 5.12410 5.21739 5.34757 5.46097 5.54972 5.62384 5.71010 5.78983 5.86365 5.90675 5.94161 5.99885 6.33536 6.72702 6.80314 7.03237 7.35961 7.49453 7.68674 7.88928 7.97980 8.16695 8.46651 8.78259 8.96820 9.48623 10.95663 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.019645 B = 0.002147 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.931308 B =13036.508218 C =13895.121537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.065 0.935 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.590 5.590 13 C 0.081 3.919 14 C 0.507 3.493 15 O -0.552 6.552 16 C -0.138 4.138 17 C -0.014 4.014 18 C 0.204 3.796 19 N -0.476 5.476 20 C 0.236 3.764 21 C -0.131 4.131 22 C -0.093 4.093 23 C -0.140 4.140 24 C -0.212 4.212 25 S 0.191 5.809 26 N -0.372 5.372 27 O 0.084 5.916 28 H 0.029 0.971 29 H 0.011 0.989 30 H 0.093 0.907 31 H 0.264 0.736 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.554 -8.995 21.067 25.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.321 5.321 13 C -0.063 4.063 14 C 0.294 3.706 15 O -0.432 6.432 16 C -0.180 4.180 17 C -0.054 4.054 18 C -0.016 4.016 19 N -0.209 5.209 20 C -0.035 4.035 21 C -0.250 4.250 22 C -0.128 4.128 23 C -0.170 4.170 24 C -0.349 4.349 25 S 0.456 5.544 26 N -0.079 5.079 27 O 0.023 5.977 28 H 0.048 0.952 29 H 0.030 0.970 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.116 0.884 37 H 0.140 0.860 38 H 0.132 0.868 39 H 0.165 0.835 40 H 0.165 0.835 41 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 11.376 -8.438 19.988 24.497 hybrid contribution -0.403 -0.796 0.518 1.032 sum 10.973 -9.234 20.506 25.023 Atomic orbital electron populations 1.22086 0.98130 0.99418 1.00843 1.18969 0.90919 0.94561 0.79820 0.91756 1.21269 1.31969 1.13073 0.90294 0.92286 1.24891 0.94924 0.94982 0.98977 1.69868 1.36179 1.22540 1.23912 0.86549 0.79263 0.79549 0.81987 1.20257 1.21168 1.20218 1.48232 1.48672 1.11679 1.23484 1.21636 0.98861 0.83229 1.02555 1.20044 0.79474 0.87062 0.84053 1.90673 1.58597 1.16978 1.76922 1.21686 1.00710 0.99450 0.96120 1.20102 1.02367 0.96849 0.86038 1.28926 0.87445 0.94961 0.90277 1.72125 1.19008 1.14245 1.15560 1.22710 0.93535 0.99655 0.87573 1.21304 0.98570 1.07468 0.97680 1.20353 0.99838 0.98115 0.94503 1.20032 0.94033 1.01870 1.01073 1.26086 1.04858 1.06799 0.97150 1.84588 1.11129 1.46716 1.11978 1.75017 1.06002 1.11491 1.15399 1.85304 1.41742 1.51981 1.18662 0.95175 0.96973 0.88816 0.92594 0.93715 0.89956 0.92783 0.88694 0.88408 0.86012 0.86811 0.83539 0.83532 0.81100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.97 37.16 0.33 -3.07 16 2 C 0.26 6.35 2.64 -69.08 -0.18 6.16 16 3 H 0.06 1.84 6.90 -51.93 -0.36 1.48 16 4 C -0.53 -13.87 7.99 -34.44 -0.28 -14.14 16 5 H 0.06 1.52 7.33 -52.49 -0.38 1.14 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.65 11.32 55.43 0.63 -24.02 16 8 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.59 -11.84 2.75 -175.26 -0.48 -12.32 16 13 C 0.08 1.28 9.24 59.84 0.55 1.83 16 14 C 0.51 9.47 7.67 -10.98 -0.08 9.38 16 15 O -0.55 -12.34 15.31 5.56 0.09 -12.25 16 16 C -0.14 -1.78 4.23 -27.88 -0.12 -1.90 16 17 C -0.01 -0.17 5.13 -27.89 -0.14 -0.31 16 18 C 0.20 2.51 7.74 -12.97 -0.10 2.41 16 19 N -0.48 -6.52 11.58 -9.87 -0.11 -6.63 16 20 C 0.24 3.15 8.02 -156.03 -1.25 1.89 16 21 C -0.13 -1.49 6.44 -36.91 -0.24 -1.73 16 22 C -0.09 -0.87 10.05 -40.94 -0.41 -1.28 16 23 C -0.14 -1.00 10.16 -41.32 -0.42 -1.42 16 24 C -0.21 -1.45 11.23 29.15 0.33 -1.12 16 25 S 0.19 1.78 23.32 -107.50 -2.51 -0.72 16 26 N -0.37 -4.99 12.16 30.99 0.38 -4.62 16 27 O 0.08 1.06 11.29 17.99 0.20 1.26 16 28 H 0.03 0.64 7.67 -51.93 -0.40 0.25 16 29 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.41 7.02 -51.93 -0.36 1.04 16 34 H 0.05 0.68 6.44 -51.93 -0.33 0.35 16 35 H 0.09 1.03 8.11 -51.93 -0.42 0.61 16 36 H 0.10 1.18 7.40 -51.93 -0.38 0.80 16 37 H 0.12 1.50 8.10 -51.93 -0.42 1.08 16 38 H 0.11 1.24 8.10 -51.93 -0.42 0.81 16 39 H 0.15 1.26 8.06 -52.48 -0.42 0.83 16 40 H 0.15 0.67 8.06 -52.48 -0.42 0.25 16 41 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 365.31 15.07 5.51 5.51 Total: -1.00 -31.58 365.31 -8.48 -40.06 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.05 Total: -0.30 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -2.10 Total: -1.65 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.41 Total: -47.60 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.29 Total: -10.99 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.51 Total: -0.72 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.58 -8.48 -40.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264114124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.812 kcal (2) G-P(sol) polarization free energy of solvation -31.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds