Wall clock time and date at job start Tue Mar 31 2020 19:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.09000 * 109.46864 * 2 1 4 4 C 1.50706 * 109.46585 * 240.00196 * 2 1 3 5 5 H 1.08001 * 119.99697 * 239.99589 * 4 2 1 6 6 C 1.37871 * 120.00160 * 60.00307 * 4 2 1 7 7 N 1.31516 * 120.00080 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00069 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47483 * 59.99721 * 8 6 4 10 10 H 1.48506 * 109.47369 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47034 * 299.99255 * 8 6 4 12 12 N 1.46496 * 109.47082 * 120.00436 * 2 1 3 13 13 C 1.46495 * 120.00628 * 59.99938 * 12 2 1 14 14 C 1.34774 * 119.99544 * 239.99775 * 12 2 1 15 15 O 1.21279 * 120.00472 * 0.02562 * 14 12 2 16 16 C 1.50706 * 120.00020 * 180.02562 * 14 12 2 17 17 C 1.52997 * 109.47238 * 180.02562 * 16 14 12 18 18 C 1.50696 * 109.47055 * 179.97438 * 17 16 14 19 19 N 1.30931 * 126.40114 * 89.71552 * 18 17 16 20 20 C 1.35396 * 105.57935 * 179.86433 * 19 18 17 21 21 C 1.47730 * 126.45187 * 180.14824 * 20 19 18 22 22 C 1.34850 * 125.27424 * 179.97438 * 21 20 19 23 23 C 1.37821 * 114.72469 * 179.79337 * 22 21 20 24 24 C 1.33717 * 115.07230 * 0.49889 * 23 22 21 25 25 S 1.75859 * 109.74365 * 359.73332 * 24 23 22 26 26 N 1.31044 * 107.09777 * 0.39910 * 20 19 18 27 27 O 1.21290 * 110.04446 * 359.74733 * 26 20 19 28 28 H 1.09000 * 109.46864 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46503 * 299.99532 * 1 2 3 30 30 H 1.08992 * 109.46921 * 59.99834 * 1 2 3 31 31 H 0.97005 * 120.00259 * 180.02562 * 7 6 4 32 32 H 1.08997 * 109.47477 * 270.00204 * 13 12 2 33 33 H 1.09004 * 109.46971 * 29.99775 * 13 12 2 34 34 H 1.08993 * 109.47768 * 149.99839 * 13 12 2 35 35 H 1.09001 * 109.46953 * 299.99667 * 16 14 12 36 36 H 1.09000 * 109.47318 * 59.99264 * 16 14 12 37 37 H 1.09001 * 109.46832 * 299.99686 * 17 16 14 38 38 H 1.09004 * 109.47261 * 59.99705 * 17 16 14 39 39 H 1.08007 * 122.63498 * 359.97438 * 22 21 20 40 40 H 1.08007 * 122.46562 * 180.23051 * 23 22 21 41 41 H 1.07994 * 125.12767 * 179.73261 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.8279 -2.5196 -4.0083 10 1 1.8268 -0.4198 -5.2205 11 1 3.8073 -1.1188 -4.0079 12 7 2.0184 -0.6907 1.1961 13 6 1.6646 -2.0932 1.4279 14 6 2.7933 -0.0357 2.0832 15 8 3.0859 1.1256 1.8916 16 6 3.2962 -0.7463 3.3134 17 6 4.1456 0.2156 4.1466 18 6 4.6479 -0.4948 5.3770 19 7 5.7651 -1.1692 5.4832 20 6 5.7964 -1.6225 6.7586 21 6 6.8632 -2.4383 7.3742 22 6 6.8702 -2.8771 8.6493 23 6 7.9737 -3.6271 8.9948 24 6 8.8720 -3.7963 8.0188 25 16 8.3245 -2.9814 6.5597 26 7 4.6998 -1.2060 7.3426 27 8 4.0333 -0.5591 6.5625 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 0.7081 1.1610 -3.4844 32 1 0.7377 -2.1445 1.9993 33 1 1.5296 -2.5969 0.4707 34 1 2.4630 -2.5819 1.9862 35 1 2.4486 -1.0892 3.9069 36 1 3.9018 -1.6025 3.0164 37 1 4.9931 0.5589 3.5534 38 1 3.5395 1.0715 4.4436 39 1 6.0723 -2.6604 9.3443 40 1 8.1054 -4.0438 9.9825 41 1 9.7945 -4.3498 8.1125 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264114124.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:55 Heat of formation + Delta-G solvation = 46.900057 kcal Electronic energy + Delta-G solvation = -25183.069923 eV Core-core repulsion = 21385.569705 eV Total energy + Delta-G solvation = -3797.500219 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.69488 -40.78098 -38.94648 -37.32052 -36.98026 -35.53980 -34.75026 -32.69009 -31.19703 -30.45518 -27.58991 -27.28985 -26.78690 -26.19612 -24.60979 -23.23086 -22.42841 -19.99286 -19.94518 -19.51970 -19.16607 -18.49756 -17.97991 -17.64000 -17.10016 -16.75361 -16.64717 -16.12283 -15.46042 -15.07234 -14.62148 -14.58998 -14.48339 -14.29158 -13.84620 -13.70395 -13.61585 -13.52396 -13.43741 -13.18650 -13.03469 -12.88897 -12.74635 -12.71927 -12.59520 -12.35613 -12.19476 -12.14704 -12.09616 -11.78352 -11.41588 -11.16432 -10.66126 -10.44814 -9.67976 -9.57233 -9.29598 -8.12213 -6.28222 -0.63686 0.11114 0.37982 0.94134 1.12127 1.43238 1.45176 1.52274 1.58726 1.82437 1.83666 2.26272 2.38789 2.55803 2.94619 3.15825 3.57911 3.79196 3.95961 4.01107 4.12054 4.33342 4.35792 4.43915 4.54433 4.59503 4.66897 4.78266 4.81181 4.85936 4.93032 4.95148 5.00839 5.08421 5.11868 5.19874 5.35974 5.51376 5.62632 5.70509 6.06653 6.19978 6.79638 6.86062 6.94171 7.33982 7.50110 8.91648 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.019645 B = 0.002147 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.931308 B =13036.508218 C =13895.121537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.261 3.739 3 H 0.013 0.987 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.962 3.038 9 H -0.264 1.264 10 H -0.285 1.285 11 H -0.277 1.277 12 N -0.601 5.601 13 C 0.077 3.923 14 C 0.500 3.500 15 O -0.598 6.598 16 C -0.121 4.121 17 C -0.007 4.007 18 C 0.214 3.786 19 N -0.495 5.495 20 C 0.233 3.767 21 C -0.173 4.173 22 C -0.083 4.083 23 C -0.146 4.146 24 C -0.187 4.187 25 S 0.164 5.836 26 N -0.387 5.387 27 O 0.084 5.916 28 H 0.045 0.955 29 H 0.022 0.978 30 H 0.066 0.934 31 H 0.264 0.736 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.125 0.875 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.122 0.878 39 H 0.150 0.850 40 H 0.178 0.822 41 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.632 -11.631 22.802 28.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.158 3.842 3 H 0.031 0.969 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.787 3.213 9 H -0.188 1.188 10 H -0.211 1.211 11 H -0.203 1.203 12 N -0.331 5.331 13 C -0.065 4.065 14 C 0.289 3.711 15 O -0.480 6.480 16 C -0.162 4.162 17 C -0.046 4.046 18 C -0.007 4.007 19 N -0.229 5.229 20 C -0.037 4.037 21 C -0.291 4.291 22 C -0.119 4.119 23 C -0.175 4.175 24 C -0.324 4.324 25 S 0.428 5.572 26 N -0.095 5.095 27 O 0.024 5.976 28 H 0.064 0.936 29 H 0.041 0.959 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.144 0.856 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.141 0.859 39 H 0.167 0.833 40 H 0.195 0.805 41 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 12.442 -11.108 21.747 27.406 hybrid contribution -0.665 0.011 0.081 0.670 sum 11.777 -11.097 21.827 27.171 Atomic orbital electron populations 1.21868 0.97211 1.00020 0.99981 1.18536 0.91583 0.92382 0.81654 0.96906 1.21560 1.31803 1.13056 0.91184 0.92075 1.25715 0.95166 0.95676 1.01979 1.70013 1.37268 1.23856 1.24411 0.85550 0.78415 0.78967 0.78325 1.18830 1.21077 1.20287 1.48222 1.49029 1.13395 1.22445 1.21870 1.01377 0.80584 1.02653 1.20964 0.78334 0.86695 0.85083 1.90651 1.59955 1.19284 1.78142 1.21587 1.01932 0.99108 0.93544 1.20006 1.02089 0.96865 0.85654 1.28835 0.87178 0.94456 0.90202 1.72129 1.19606 1.14957 1.16162 1.23089 0.93850 0.99396 0.87411 1.21481 0.99306 1.09498 0.98853 1.20636 1.00400 0.97130 0.93741 1.20334 0.93130 1.01535 1.02535 1.26500 1.05496 1.05114 0.95257 1.84638 1.10953 1.47652 1.13940 1.74991 1.06466 1.12340 1.15729 1.85282 1.41650 1.52009 1.18609 0.93641 0.95893 0.91575 0.92702 0.91394 0.91476 0.89214 0.85647 0.86879 0.86800 0.85938 0.83251 0.80457 0.77830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.22 8.97 71.99 0.65 -5.57 16 2 C 0.26 13.15 2.64 44.25 0.12 13.26 16 3 H 0.01 0.78 6.90 -2.39 -0.02 0.77 16 4 C -0.54 -28.59 7.99 25.60 0.20 -28.39 16 5 H 0.06 3.14 7.33 -2.91 -0.02 3.12 16 6 C 0.01 0.77 5.30 84.65 0.45 1.22 16 7 N -0.92 -52.29 11.32 21.45 0.24 -52.05 16 8 Si 0.96 42.60 29.54 68.60 2.03 44.63 16 9 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 10 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 N -0.60 -23.80 2.75 -826.79 -2.28 -26.07 16 13 C 0.08 2.25 9.24 127.77 1.18 3.43 16 14 C 0.50 18.48 7.67 87.66 0.67 19.16 16 15 O -0.60 -27.49 15.31 -3.02 -0.05 -27.54 16 16 C -0.12 -2.87 4.23 29.85 0.13 -2.74 16 17 C -0.01 -0.16 5.13 29.85 0.15 0.00 16 18 C 0.21 5.04 7.74 88.35 0.68 5.73 16 19 N -0.49 -13.27 11.58 -302.25 -3.50 -16.77 16 20 C 0.23 6.09 8.02 136.95 1.10 7.19 16 21 C -0.17 -3.78 6.44 24.00 0.15 -3.62 16 22 C -0.08 -1.41 10.05 21.39 0.22 -1.20 16 23 C -0.15 -1.64 10.16 21.14 0.21 -1.43 16 24 C -0.19 -1.98 11.23 66.79 0.75 -1.23 16 25 S 0.16 2.87 23.32 -56.49 -1.32 1.55 16 26 N -0.39 -10.14 12.16 -58.75 -0.71 -10.86 16 27 O 0.08 2.04 11.29 74.45 0.84 2.88 16 28 H 0.04 1.94 7.67 -2.39 -0.02 1.92 16 29 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.07 3.49 6.07 -2.39 -0.01 3.47 16 31 H 0.26 14.34 8.31 -92.70 -0.77 13.57 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.07 2.17 7.02 -2.38 -0.02 2.16 16 34 H 0.09 1.96 6.44 -2.39 -0.02 1.94 16 35 H 0.13 2.27 8.11 -2.39 -0.02 2.25 16 36 H 0.11 2.41 7.40 -2.39 -0.02 2.39 16 37 H 0.11 2.80 8.10 -2.39 -0.02 2.78 16 38 H 0.12 2.57 8.10 -2.38 -0.02 2.55 16 39 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 40 H 0.18 0.89 8.06 -2.91 -0.02 0.86 16 41 H 0.20 0.76 8.06 -2.91 -0.02 0.73 16 Total: -1.00 -71.56 365.31 2.98 -68.57 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 1.06 Total: 9.84 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 6.67 Total: 5.81 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -6.25 Total: -105.75 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: 0.79 Total: -24.66 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -1.32 Total: 1.55 kcal Total: -71.56 2.98 -68.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264114124.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.473 kcal (2) G-P(sol) polarization free energy of solvation -71.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds