Wall clock time and date at job start Tue Mar 31 2020 18:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30518 * 126.39855 * 2 1 4 4 N 1.28543 * 109.89964 * 179.97438 * 3 2 1 5 5 C 1.30528 * 109.89658 * 359.97438 * 4 3 2 6 6 S 1.76195 * 126.40095 * 180.02562 * 5 4 3 7 7 O 1.42100 * 104.27498 * 333.94656 * 6 5 4 8 8 O 1.42103 * 104.27888 * 206.09429 * 6 5 4 9 9 C 1.81399 * 104.45175 * 90.01937 * 6 5 4 10 10 C 1.52999 * 109.46810 * 180.02562 * 9 6 5 11 11 C 1.53006 * 109.46997 * 180.02562 * 10 9 6 12 12 C 1.50699 * 109.47240 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99962 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31522 * 120.00243 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99980 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47195 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46997 * 120.00167 * 16 14 12 19 19 H 1.48500 * 109.47074 * 240.00161 * 16 14 12 20 20 N 1.36289 * 107.20462 * 0.26151 * 5 4 3 21 21 C 1.40271 * 127.10359 * 179.74520 * 20 5 4 22 22 C 1.38811 * 120.06117 * 294.71914 * 21 20 5 23 23 C 1.38121 * 119.93389 * 179.81420 * 22 21 20 24 24 C 1.38274 * 120.06466 * 0.44686 * 23 22 21 25 25 C 1.38274 * 120.12683 * 359.78619 * 24 23 22 26 26 C 1.38120 * 120.06699 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47095 * 90.02629 * 1 2 3 28 28 H 1.09000 * 109.47368 * 210.02494 * 1 2 3 29 29 H 1.09004 * 109.47262 * 330.03102 * 1 2 3 30 30 H 1.09000 * 109.47070 * 300.00246 * 9 6 5 31 31 H 1.09001 * 109.46593 * 60.00243 * 9 6 5 32 32 H 1.09000 * 109.47486 * 299.99969 * 10 9 6 33 33 H 1.09001 * 109.47362 * 60.00691 * 10 9 6 34 34 H 1.09000 * 109.46866 * 300.00212 * 11 10 9 35 35 H 1.08996 * 109.47261 * 59.99820 * 11 10 9 36 36 H 0.96992 * 120.00032 * 179.97438 * 15 14 12 37 37 H 1.07996 * 120.03059 * 0.02562 * 22 21 20 38 38 H 1.08004 * 119.97148 * 180.18991 * 23 22 21 39 39 H 1.08004 * 119.93956 * 179.77003 * 24 23 22 40 40 H 1.08003 * 119.96503 * 179.97438 * 25 24 23 41 41 H 1.07993 * 120.03550 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2815 1.0506 0.0000 4 7 3.5140 0.6855 0.0005 5 6 3.5914 -0.6175 0.0015 6 16 5.0690 -1.5772 0.0031 7 8 6.0372 -0.7309 -0.6016 8 8 4.6897 -2.8057 -0.6021 9 6 5.4472 -1.8231 1.7601 10 6 6.7256 -2.6527 1.8953 11 6 7.0442 -2.8607 3.3773 12 6 8.3038 -3.6773 3.5106 13 1 8.8252 -4.0139 2.6266 14 6 8.7911 -3.9937 4.7609 15 7 8.1565 -3.5834 5.8373 16 14 10.3520 -5.0065 4.9261 17 1 10.8700 -5.3416 3.5753 18 1 11.3736 -4.2241 5.6674 19 1 10.0537 -6.2585 5.6669 20 7 2.3157 -1.0971 -0.0044 21 6 1.9173 -2.4420 -0.0108 22 6 2.2050 -3.2473 -1.1042 23 6 1.8148 -4.5723 -1.1060 24 6 1.1302 -5.0943 -0.0240 25 6 0.8380 -4.2932 1.0645 26 6 1.2290 -2.9685 1.0736 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3634 0.8903 0.5134 30 1 5.5902 -0.8549 2.2400 31 1 4.6207 -2.3477 2.2396 32 1 6.5830 -3.6209 1.4154 33 1 7.5518 -2.1277 1.4160 34 1 7.1867 -1.8926 3.8576 35 1 6.2180 -3.3858 3.8564 36 1 8.4991 -3.8064 6.7168 37 1 2.7364 -2.8391 -1.9511 38 1 2.0411 -5.2002 -1.9551 39 1 0.8228 -6.1296 -0.0291 40 1 0.3027 -4.7035 1.9081 41 1 1.0001 -2.3432 1.9238 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265121934.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:44 Heat of formation + Delta-G solvation = 30.958597 kcal Electronic energy + Delta-G solvation = -26558.208506 eV Core-core repulsion = 22760.017014 eV Total energy + Delta-G solvation = -3798.191492 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.56896 -39.63764 -37.14789 -36.01692 -35.27809 -34.79657 -32.92798 -32.26573 -31.38492 -30.17277 -28.36258 -27.90328 -24.42954 -23.84341 -23.40216 -22.68624 -21.27745 -20.62842 -19.33489 -18.55056 -17.18806 -17.00540 -16.67885 -16.49622 -15.95392 -15.66087 -15.14348 -14.80985 -14.56985 -14.50968 -14.32927 -13.91084 -13.56665 -13.40776 -13.12347 -12.71266 -12.55612 -12.38904 -12.15343 -12.03353 -11.93243 -11.89913 -11.82184 -11.63315 -11.34167 -11.02705 -10.97046 -10.92922 -10.80449 -10.47473 -10.03418 -9.88745 -9.46126 -9.36178 -9.22428 -9.17766 -8.44661 -6.09237 -4.12663 -0.12333 0.50987 0.97392 1.06865 1.93535 2.29495 2.67353 3.23612 3.27498 3.35327 3.39820 3.74676 3.78473 4.06711 4.39331 4.39795 4.45139 4.50150 4.72257 4.79020 4.94933 4.96446 4.98137 5.04087 5.15026 5.20080 5.25500 5.27594 5.34915 5.55377 5.59573 5.71868 5.89852 5.93803 6.08798 6.15862 6.25979 6.31747 6.62127 6.76371 7.51662 7.60248 7.88251 8.11241 8.27260 8.93520 9.52410 11.01977 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.003395 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.353467 B = 8245.936111 C = 9073.249097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.213 3.787 3 N -0.290 5.290 4 N -0.185 5.185 5 C -0.352 4.352 6 S 2.501 3.499 7 O -0.905 6.905 8 O -0.921 6.921 9 C -0.570 4.570 10 C -0.106 4.106 11 C 0.031 3.969 12 C -0.526 4.526 13 H 0.060 0.940 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.894 3.106 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 N -0.380 5.380 21 C 0.067 3.933 22 C -0.047 4.047 23 C -0.107 4.107 24 C -0.092 4.092 25 C -0.114 4.114 26 C -0.099 4.099 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.139 0.861 31 H 0.132 0.868 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.024 0.976 35 H 0.022 0.978 36 H 0.261 0.739 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.765 -0.639 -11.867 23.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.052 4.052 3 N -0.134 5.134 4 N -0.028 5.028 5 C -0.692 4.692 6 S 2.674 3.326 7 O -0.901 6.901 8 O -0.918 6.918 9 C -0.704 4.704 10 C -0.145 4.145 11 C -0.007 4.007 12 C -0.564 4.564 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.533 5.533 16 Si 0.722 3.278 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.210 1.210 20 N -0.067 5.067 21 C -0.023 4.023 22 C -0.066 4.066 23 C -0.125 4.125 24 C -0.110 4.110 25 C -0.133 4.133 26 C -0.118 4.118 27 H 0.112 0.888 28 H 0.104 0.896 29 H 0.121 0.879 30 H 0.157 0.843 31 H 0.150 0.850 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.042 0.958 35 H 0.040 0.960 36 H 0.071 0.929 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.151 0.849 40 H 0.154 0.846 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -19.995 0.594 -12.488 23.582 hybrid contribution -0.035 -1.283 0.866 1.549 sum -20.030 -0.689 -11.622 23.168 Atomic orbital electron populations 1.20399 0.82773 1.05233 1.04807 1.25721 0.97652 0.82169 0.99674 1.74266 0.96356 1.23432 1.19358 1.74209 1.12416 1.06724 1.09467 1.38881 1.06477 1.04718 1.19143 1.06418 0.72195 0.73867 0.80134 1.93612 1.55193 1.67081 1.74249 1.93591 1.81594 1.41937 1.74656 1.30209 1.10095 1.11570 1.18557 1.21626 0.90747 0.97443 1.04718 1.19089 0.97030 0.97665 0.86959 1.21255 1.09176 1.33530 0.92475 0.92185 1.25017 0.97397 0.96045 0.95874 1.69966 1.39649 1.45935 0.97776 0.86494 0.83111 0.79900 0.78286 1.19547 1.20896 1.20950 1.43675 1.04852 1.06321 1.51816 1.17745 1.05861 0.80933 0.97731 1.21134 0.95046 0.94025 0.96421 1.21097 0.97814 0.94227 0.99406 1.21429 0.96314 1.00232 0.93069 1.21063 1.00520 0.92612 0.99060 1.21116 0.97886 0.96465 0.96314 0.88845 0.89640 0.87912 0.84265 0.85015 0.91105 0.90952 0.95814 0.95985 0.92897 0.84772 0.84551 0.84893 0.84557 0.85039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.23 36.01 0.37 -0.14 16 2 C 0.21 2.65 7.99 -154.25 -1.23 1.42 16 3 N -0.29 -4.58 12.20 32.94 0.40 -4.18 16 4 N -0.18 -3.23 12.19 30.50 0.37 -2.86 16 5 C -0.35 -5.50 7.65 -89.20 -0.68 -6.19 16 6 S 2.50 39.49 5.25 -107.50 -0.56 38.92 16 7 O -0.91 -17.01 17.94 -57.54 -1.03 -18.04 16 8 O -0.92 -14.55 14.08 -57.54 -0.81 -15.36 16 9 C -0.57 -8.95 5.98 37.16 0.22 -8.73 16 10 C -0.11 -2.06 5.16 -26.73 -0.14 -2.20 16 11 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 12 C -0.53 -14.44 9.11 -34.44 -0.31 -14.75 16 13 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 16 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 20 N -0.38 -5.01 2.82 -58.06 -0.16 -5.18 16 21 C 0.07 0.76 4.95 -83.57 -0.41 0.35 16 22 C -0.05 -0.52 7.45 -39.41 -0.29 -0.81 16 23 C -0.11 -0.94 10.04 -39.61 -0.40 -1.34 16 24 C -0.09 -0.69 10.04 -39.55 -0.40 -1.09 16 25 C -0.11 -0.86 10.04 -39.61 -0.40 -1.26 16 26 C -0.10 -0.90 9.01 -39.41 -0.36 -1.26 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 0.46 7.10 -51.93 -0.37 0.09 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.14 2.04 8.14 -51.92 -0.42 1.62 16 31 H 0.13 1.81 8.14 -51.92 -0.42 1.39 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.13 1.54 7.55 -52.49 -0.40 1.15 16 38 H 0.14 0.91 8.06 -52.48 -0.42 0.49 16 39 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 40 H 0.14 0.71 8.06 -52.48 -0.42 0.28 16 41 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 364.79 15.07 5.50 5.50 Total: -1.00 -36.10 364.79 -10.23 -46.33 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -5.38 Total: -2.08 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: -4.27 Total: -33.83 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 1.35 Total: -37.61 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -1.84 Total: -33.40 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 39.49 SS G_CDS: -0.56 Total: 38.92 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.10 -10.23 -46.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265121934.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.288 kcal (2) G-P(sol) polarization free energy of solvation -36.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds