Wall clock time and date at job start Tue Mar 31 2020 18:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30518 * 126.39855 * 2 1 4 4 N 1.28543 * 109.89964 * 179.97438 * 3 2 1 5 5 C 1.30528 * 109.89658 * 359.97438 * 4 3 2 6 6 S 1.76195 * 126.40095 * 180.02562 * 5 4 3 7 7 O 1.42100 * 104.27498 * 333.94656 * 6 5 4 8 8 O 1.42103 * 104.27888 * 206.09429 * 6 5 4 9 9 C 1.81399 * 104.45175 * 90.01937 * 6 5 4 10 10 C 1.52999 * 109.46810 * 180.02562 * 9 6 5 11 11 C 1.53006 * 109.46997 * 180.02562 * 10 9 6 12 12 C 1.50699 * 109.47240 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99962 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31522 * 120.00243 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99980 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47195 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46997 * 120.00167 * 16 14 12 19 19 H 1.48500 * 109.47074 * 240.00161 * 16 14 12 20 20 N 1.36289 * 107.20462 * 0.26151 * 5 4 3 21 21 C 1.40271 * 127.10359 * 179.74520 * 20 5 4 22 22 C 1.38811 * 120.06117 * 294.71914 * 21 20 5 23 23 C 1.38121 * 119.93389 * 179.81420 * 22 21 20 24 24 C 1.38274 * 120.06466 * 0.44686 * 23 22 21 25 25 C 1.38274 * 120.12683 * 359.78619 * 24 23 22 26 26 C 1.38120 * 120.06699 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47095 * 90.02629 * 1 2 3 28 28 H 1.09000 * 109.47368 * 210.02494 * 1 2 3 29 29 H 1.09004 * 109.47262 * 330.03102 * 1 2 3 30 30 H 1.09000 * 109.47070 * 300.00246 * 9 6 5 31 31 H 1.09001 * 109.46593 * 60.00243 * 9 6 5 32 32 H 1.09000 * 109.47486 * 299.99969 * 10 9 6 33 33 H 1.09001 * 109.47362 * 60.00691 * 10 9 6 34 34 H 1.09000 * 109.46866 * 300.00212 * 11 10 9 35 35 H 1.08996 * 109.47261 * 59.99820 * 11 10 9 36 36 H 0.96992 * 120.00032 * 179.97438 * 15 14 12 37 37 H 1.07996 * 120.03059 * 0.02562 * 22 21 20 38 38 H 1.08004 * 119.97148 * 180.18991 * 23 22 21 39 39 H 1.08004 * 119.93956 * 179.77003 * 24 23 22 40 40 H 1.08003 * 119.96503 * 179.97438 * 25 24 23 41 41 H 1.07993 * 120.03550 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2815 1.0506 0.0000 4 7 3.5140 0.6855 0.0005 5 6 3.5914 -0.6175 0.0015 6 16 5.0690 -1.5772 0.0031 7 8 6.0372 -0.7309 -0.6016 8 8 4.6897 -2.8057 -0.6021 9 6 5.4472 -1.8231 1.7601 10 6 6.7256 -2.6527 1.8953 11 6 7.0442 -2.8607 3.3773 12 6 8.3038 -3.6773 3.5106 13 1 8.8252 -4.0139 2.6266 14 6 8.7911 -3.9937 4.7609 15 7 8.1565 -3.5834 5.8373 16 14 10.3520 -5.0065 4.9261 17 1 10.8700 -5.3416 3.5753 18 1 11.3736 -4.2241 5.6674 19 1 10.0537 -6.2585 5.6669 20 7 2.3157 -1.0971 -0.0044 21 6 1.9173 -2.4420 -0.0108 22 6 2.2050 -3.2473 -1.1042 23 6 1.8148 -4.5723 -1.1060 24 6 1.1302 -5.0943 -0.0240 25 6 0.8380 -4.2932 1.0645 26 6 1.2290 -2.9685 1.0736 27 1 -0.3633 -0.0005 -1.0277 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3634 0.8903 0.5134 30 1 5.5902 -0.8549 2.2400 31 1 4.6207 -2.3477 2.2396 32 1 6.5830 -3.6209 1.4154 33 1 7.5518 -2.1277 1.4160 34 1 7.1867 -1.8926 3.8576 35 1 6.2180 -3.3858 3.8564 36 1 8.4991 -3.8064 6.7168 37 1 2.7364 -2.8391 -1.9511 38 1 2.0411 -5.2002 -1.9551 39 1 0.8228 -6.1296 -0.0291 40 1 0.3027 -4.7035 1.9081 41 1 1.0001 -2.3432 1.9238 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265121934.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:43 Heat of formation + Delta-G solvation = 8.382307 kcal Electronic energy + Delta-G solvation = -26559.187488 eV Core-core repulsion = 22760.017014 eV Total energy + Delta-G solvation = -3799.170473 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.62292 -40.36319 -38.45034 -37.36244 -36.54777 -36.20741 -34.21608 -33.82026 -32.04390 -30.95094 -29.78239 -29.15902 -25.82208 -25.23161 -24.25680 -23.58880 -22.34634 -22.12208 -20.44778 -19.61154 -18.67645 -18.19994 -17.96130 -17.35049 -17.27096 -17.04881 -16.46235 -15.97073 -15.87246 -15.56626 -15.21522 -14.57837 -14.52756 -14.28753 -14.17481 -14.04938 -13.73730 -13.65648 -13.53252 -13.43113 -13.28768 -13.09777 -12.83282 -12.78995 -12.68783 -12.60747 -12.50573 -12.20516 -12.06794 -11.79363 -11.71293 -11.40512 -11.18805 -10.82999 -10.56739 -10.02937 -9.94029 -8.21424 -6.32155 -1.39918 -0.33779 0.14593 0.31574 0.99278 1.20382 1.41545 1.42974 1.44887 1.55750 2.40024 2.45671 2.58743 2.77967 3.12158 3.13020 3.51039 3.56255 3.68951 3.80134 3.83460 3.98180 4.18444 4.26805 4.28797 4.37594 4.45906 4.50032 4.52728 4.58139 4.66120 4.78760 4.90689 4.95612 5.01762 5.22519 5.30284 5.46073 5.46316 5.52616 5.61325 5.79919 5.90411 6.19272 6.83494 7.00859 7.37392 8.90378 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013501 B = 0.003395 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.353467 B = 8245.936111 C = 9073.249097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.225 3.775 3 N -0.324 5.324 4 N -0.219 5.219 5 C -0.365 4.365 6 S 2.528 3.472 7 O -0.940 6.940 8 O -0.921 6.921 9 C -0.568 4.568 10 C -0.104 4.104 11 C 0.031 3.969 12 C -0.548 4.548 13 H 0.064 0.936 14 C 0.003 3.997 15 N -0.930 5.930 16 Si 0.962 3.038 17 H -0.262 1.262 18 H -0.280 1.280 19 H -0.276 1.276 20 N -0.375 5.375 21 C 0.042 3.958 22 C -0.070 4.070 23 C -0.113 4.113 24 C -0.086 4.086 25 C -0.110 4.110 26 C -0.102 4.102 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.147 0.853 31 H 0.153 0.847 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.002 0.998 35 H 0.008 0.992 36 H 0.264 0.736 37 H 0.118 0.882 38 H 0.153 0.847 39 H 0.164 0.836 40 H 0.166 0.834 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.489 -2.637 -11.910 25.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.041 4.041 3 N -0.168 5.168 4 N -0.063 5.063 5 C -0.708 4.708 6 S 2.702 3.298 7 O -0.936 6.936 8 O -0.917 6.917 9 C -0.702 4.702 10 C -0.143 4.143 11 C -0.007 4.007 12 C -0.586 4.586 13 H 0.082 0.918 14 C -0.195 4.195 15 N -0.570 5.570 16 Si 0.787 3.213 17 H -0.186 1.186 18 H -0.206 1.206 19 H -0.202 1.202 20 N -0.061 5.061 21 C -0.047 4.047 22 C -0.090 4.090 23 C -0.132 4.132 24 C -0.104 4.104 25 C -0.128 4.128 26 C -0.121 4.121 27 H 0.130 0.870 28 H 0.125 0.875 29 H 0.136 0.864 30 H 0.165 0.835 31 H 0.171 0.829 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.020 0.980 35 H 0.027 0.973 36 H 0.073 0.927 37 H 0.136 0.864 38 H 0.171 0.829 39 H 0.182 0.818 40 H 0.183 0.817 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -21.711 -1.425 -12.543 25.114 hybrid contribution 0.347 -0.711 0.861 1.169 sum -21.364 -2.136 -11.682 24.443 Atomic orbital electron populations 1.20734 0.78920 1.07019 1.06503 1.26654 0.99418 0.81158 0.96846 1.74180 0.96222 1.25157 1.21259 1.74127 1.13765 1.07765 1.10654 1.38476 1.07500 1.04344 1.20434 1.05401 0.71673 0.73259 0.79419 1.93565 1.56983 1.68085 1.74985 1.93584 1.81594 1.41970 1.74573 1.30110 1.09098 1.11701 1.19276 1.21430 0.92710 0.98890 1.01320 1.18974 0.95793 0.95897 0.90080 1.21736 1.10278 1.33779 0.92839 0.91757 1.25914 1.00744 0.97221 0.95595 1.70079 1.41404 1.47234 0.98322 0.85440 0.78962 0.78325 0.78609 1.18563 1.20580 1.20179 1.43808 1.03935 1.07409 1.50957 1.18014 1.07654 0.80084 0.98986 1.21189 0.96240 0.95239 0.96285 1.21389 0.97666 0.93441 1.00660 1.21840 0.94774 1.01643 0.92133 1.21473 0.99671 0.91811 0.99871 1.21340 0.97431 0.97425 0.95873 0.86985 0.87478 0.86397 0.83499 0.82883 0.89982 0.90878 0.97958 0.97317 0.92675 0.86391 0.82885 0.81840 0.81671 0.83854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.23 71.24 0.73 -0.12 16 2 C 0.23 5.41 7.99 137.72 1.10 6.52 16 3 N -0.32 -10.34 12.20 -49.69 -0.61 -10.95 16 4 N -0.22 -7.88 12.19 -57.41 -0.70 -8.58 16 5 C -0.36 -11.59 7.65 179.85 1.38 -10.21 16 6 S 2.53 80.77 5.25 -56.49 -0.30 80.47 16 7 O -0.94 -36.37 17.94 -127.65 -2.29 -38.66 16 8 O -0.92 -28.97 14.08 -127.65 -1.80 -30.77 16 9 C -0.57 -17.81 5.98 71.98 0.43 -17.37 16 10 C -0.10 -4.07 5.16 30.60 0.16 -3.91 16 11 C 0.03 1.56 4.97 29.85 0.15 1.71 16 12 C -0.55 -30.26 9.11 25.60 0.23 -30.03 16 13 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 14 C 0.00 0.19 5.46 84.65 0.46 0.66 16 15 N -0.93 -54.90 13.29 21.45 0.28 -54.61 16 16 Si 0.96 43.27 29.54 68.60 2.03 45.30 16 17 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 20 N -0.37 -9.71 2.82 -337.61 -0.95 -10.66 16 21 C 0.04 0.89 4.95 38.06 0.19 1.08 16 22 C -0.07 -1.49 7.45 22.38 0.17 -1.32 16 23 C -0.11 -1.75 10.04 22.25 0.22 -1.52 16 24 C -0.09 -0.98 10.04 22.29 0.22 -0.76 16 25 C -0.11 -1.27 10.04 22.25 0.22 -1.04 16 26 C -0.10 -1.60 9.01 22.38 0.20 -1.40 16 27 H 0.11 0.95 8.14 -2.39 -0.02 0.94 16 28 H 0.11 0.81 7.10 -2.39 -0.02 0.79 16 29 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.15 4.38 8.14 -2.39 -0.02 4.36 16 31 H 0.15 4.09 8.14 -2.39 -0.02 4.07 16 32 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 33 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 34 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 37 H 0.12 2.78 7.55 -2.91 -0.02 2.76 16 38 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 39 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 40 H 0.17 0.94 8.06 -2.91 -0.02 0.92 16 41 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -79.62 364.79 2.57 -77.05 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 1.04 Total: 9.13 kcal Atomic # 6 Polarization: -63.59 SS G_CDS: 5.87 Total: -57.73 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -1.97 Total: -84.79 kcal Atomic # 8 Polarization: -65.34 SS G_CDS: -4.09 Total: -69.43 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: 80.77 SS G_CDS: -0.30 Total: 80.47 kcal Total: -79.62 2.57 -77.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265121934.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.431 kcal (2) G-P(sol) polarization free energy of solvation -79.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds