Wall clock time and date at job start Tue Mar 31 2020 19:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47556 * 2 1 4 4 C 1.50706 * 109.46927 * 120.00613 * 2 1 3 5 5 C 1.38229 * 120.00177 * 59.72366 * 4 2 1 6 6 C 1.38233 * 119.99983 * 179.80743 * 5 4 2 7 7 C 1.38227 * 119.99988 * 0.40255 * 6 5 4 8 8 C 1.38237 * 120.00254 * 359.84870 * 7 6 5 9 9 C 1.38236 * 119.99556 * 239.99332 * 4 2 1 10 10 N 1.46504 * 109.46962 * 239.99997 * 2 1 3 11 11 C 1.35487 * 126.98292 * 300.00413 * 10 2 1 12 12 N 1.30519 * 107.31002 * 180.02562 * 11 10 2 13 13 N 1.28600 * 109.66926 * 359.72767 * 12 11 10 14 14 C 1.30518 * 109.67324 * 0.45263 * 13 12 11 15 15 S 1.76195 * 126.34617 * 179.82312 * 14 13 12 16 16 O 1.42098 * 104.28035 * 153.61524 * 15 14 13 17 17 O 1.42105 * 104.27718 * 25.76141 * 15 14 13 18 18 C 1.81399 * 104.45056 * 269.68784 * 15 14 13 19 19 C 1.53006 * 109.47004 * 179.97438 * 18 15 14 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 15 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99834 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00496 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47325 * 59.99531 * 24 22 20 26 26 H 1.48496 * 109.47425 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47183 * 299.99726 * 24 22 20 28 28 H 1.08994 * 109.46581 * 300.00094 * 1 2 3 29 29 H 1.09002 * 109.46623 * 59.99706 * 1 2 3 30 30 H 1.08998 * 109.47289 * 179.97438 * 1 2 3 31 31 H 1.08006 * 120.00003 * 359.97438 * 5 4 2 32 32 H 1.08007 * 120.00107 * 180.22926 * 6 5 4 33 33 H 1.08004 * 120.00129 * 179.82831 * 7 6 5 34 34 H 1.07999 * 120.00375 * 179.97438 * 8 7 6 35 35 H 1.08001 * 120.00241 * 359.97438 * 9 4 2 36 36 H 1.08002 * 126.35001 * 0.02562 * 11 10 2 37 37 H 1.09000 * 109.47234 * 60.00085 * 18 15 14 38 38 H 1.09001 * 109.47232 * 299.99596 * 18 15 14 39 39 H 1.08993 * 109.46955 * 300.00150 * 19 18 15 40 40 H 1.09000 * 109.47050 * 59.99979 * 19 18 15 41 41 H 0.96992 * 120.00032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2305 5 6 1.6937 -2.0323 1.4520 6 6 2.1577 -2.6852 2.5786 7 6 2.9535 -2.0139 3.4878 8 6 3.2879 -0.6906 3.2690 9 6 2.8272 -0.0388 2.1404 10 7 2.0183 -0.6906 -1.1962 11 6 1.7797 -1.9767 -1.5493 12 7 2.3970 -2.1901 -2.6794 13 7 2.9988 -1.1169 -3.0532 14 6 2.8008 -0.1730 -2.1738 15 16 3.4283 1.4718 -2.2481 16 8 2.4964 2.2367 -1.4959 17 8 3.6217 1.7108 -3.6355 18 6 5.0233 1.3870 -1.3882 19 6 5.6757 2.7710 -1.3861 20 6 7.0005 2.7007 -0.6712 21 1 7.3427 1.7628 -0.2593 22 6 7.7752 3.8338 -0.5421 23 7 7.3583 4.9761 -1.0433 24 14 9.4176 3.7466 0.3433 25 1 10.3056 2.7825 -0.3545 26 1 10.0508 5.0898 0.3456 27 1 9.2025 3.2979 1.7425 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.0687 -2.5557 0.7434 32 1 1.8961 -3.7190 2.7498 33 1 3.3138 -2.5232 4.3695 34 1 3.9094 -0.1660 3.9796 35 1 3.0885 0.9950 1.9693 36 1 1.1884 -2.6928 -0.9979 37 1 5.6751 0.6793 -1.9006 38 1 4.8654 1.0577 -0.3612 39 1 5.8336 3.0998 -2.4131 40 1 5.0240 3.4790 -0.8740 41 1 7.9034 5.7732 -0.9528 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274756809.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:51 Heat of formation + Delta-G solvation = 33.802218 kcal Electronic energy + Delta-G solvation = -26964.578320 eV Core-core repulsion = 23166.510137 eV Total energy + Delta-G solvation = -3798.068183 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.38269 -39.80129 -37.14776 -36.13007 -35.75794 -34.04501 -32.12711 -31.46208 -31.30745 -30.84392 -29.62095 -25.78184 -25.15798 -23.60133 -23.09009 -22.53302 -21.63808 -21.18401 -19.01674 -17.98658 -17.31420 -16.87062 -16.48198 -16.18744 -16.05945 -15.58660 -15.30552 -15.01743 -14.97601 -14.61114 -14.15677 -13.73620 -13.62506 -13.52094 -13.09509 -12.69941 -12.62236 -12.41952 -11.95923 -11.89441 -11.88050 -11.73255 -11.54892 -11.39657 -11.15995 -11.14061 -11.10588 -10.71979 -10.55847 -10.51183 -10.45766 -10.01704 -9.76556 -9.31265 -9.26179 -9.22172 -8.57576 -6.20265 -4.26694 0.14606 0.82005 1.05171 1.23613 2.21817 2.54664 2.94893 3.23108 3.28842 3.30319 3.43488 3.92212 3.95190 4.04073 4.28918 4.30715 4.34381 4.58515 4.67808 4.75967 4.82769 4.97749 5.09160 5.14051 5.15534 5.17253 5.29713 5.40684 5.48790 5.52415 5.57581 5.65763 5.67411 5.79014 6.07766 6.15404 6.19280 6.25785 6.44486 6.60941 7.15541 7.21508 7.72192 8.05288 8.31528 8.76041 9.38629 10.90523 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010589 B = 0.004472 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.558126 B = 6260.147756 C = 7910.550778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.142 3.858 3 H 0.148 0.852 4 C -0.112 4.112 5 C -0.109 4.109 6 C -0.119 4.119 7 C -0.110 4.110 8 C -0.112 4.112 9 C -0.096 4.096 10 N -0.413 5.413 11 C 0.175 3.825 12 N -0.296 5.296 13 N -0.193 5.193 14 C -0.351 4.351 15 S 2.491 3.509 16 O -0.935 6.935 17 O -0.906 6.906 18 C -0.550 4.550 19 C 0.028 3.972 20 C -0.522 4.522 21 H 0.063 0.937 22 C 0.061 3.939 23 N -0.888 5.888 24 Si 0.901 3.099 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.275 1.275 28 H 0.090 0.910 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.221 0.779 37 H 0.134 0.866 38 H 0.124 0.876 39 H 0.040 0.960 40 H 0.038 0.962 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.785 -13.134 9.865 21.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.040 3.960 3 H 0.165 0.835 4 C -0.113 4.113 5 C -0.127 4.127 6 C -0.137 4.137 7 C -0.128 4.128 8 C -0.130 4.130 9 C -0.114 4.114 10 N -0.101 5.101 11 C -0.113 4.113 12 N -0.139 5.139 13 N -0.038 5.038 14 C -0.693 4.693 15 S 2.665 3.335 16 O -0.931 6.931 17 O -0.902 6.902 18 C -0.686 4.686 19 C -0.011 4.011 20 C -0.562 4.562 21 H 0.081 0.919 22 C -0.142 4.142 23 N -0.526 5.526 24 Si 0.728 3.272 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.201 1.201 28 H 0.108 0.892 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.237 0.763 37 H 0.152 0.848 38 H 0.142 0.858 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.803 -13.020 8.211 20.675 hybrid contribution 0.545 -0.389 1.946 2.058 sum -13.259 -13.408 10.157 21.418 Atomic orbital electron populations 1.22151 0.91048 1.03343 1.04695 1.21166 0.97177 0.98620 0.79026 0.83452 1.19774 1.00430 0.95038 0.96017 1.21025 0.99869 0.93924 0.97870 1.21126 0.98177 1.00004 0.94372 1.21286 0.97457 0.94801 0.99231 1.21261 0.99410 0.94889 0.97478 1.21259 0.95496 1.00806 0.93875 1.46485 1.35164 1.10441 1.18055 1.26818 1.01918 0.86429 0.96092 1.74279 1.10739 1.18725 1.10160 1.74252 1.14347 0.94850 1.20319 1.38779 1.10535 1.25203 0.94815 1.06825 0.78876 0.71034 0.76811 1.93475 1.61645 1.64871 1.73093 1.93592 1.86465 1.80603 1.29579 1.30180 1.14590 1.11933 1.11917 1.19087 0.97014 0.85109 0.99868 1.20895 1.02485 0.95704 1.37083 0.91883 1.25035 0.98437 0.95245 0.95481 1.69934 1.38311 0.99856 1.44490 0.86512 0.83233 0.77422 0.80034 1.19957 1.20999 1.20070 0.89151 0.90612 0.91605 0.86244 0.85664 0.85687 0.85124 0.84610 0.76264 0.84817 0.85759 0.94178 0.94371 0.92320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.06 37.16 0.34 -0.98 16 2 C 0.14 1.58 3.09 -69.08 -0.21 1.37 16 3 H 0.15 1.82 5.03 -51.93 -0.26 1.56 16 4 C -0.11 -1.13 4.97 -104.62 -0.52 -1.65 16 5 C -0.11 -0.92 8.31 -39.59 -0.33 -1.25 16 6 C -0.12 -0.93 10.05 -39.59 -0.40 -1.33 16 7 C -0.11 -0.89 10.05 -39.59 -0.40 -1.29 16 8 C -0.11 -1.04 10.05 -39.58 -0.40 -1.43 16 9 C -0.10 -0.99 9.67 -39.58 -0.38 -1.38 16 10 N -0.41 -5.55 2.59 -113.10 -0.29 -5.84 16 11 C 0.17 2.17 10.99 -89.95 -0.99 1.18 16 12 N -0.30 -4.85 12.21 29.69 0.36 -4.49 16 13 N -0.19 -3.58 12.20 30.35 0.37 -3.21 16 14 C -0.35 -5.89 7.68 -89.95 -0.69 -6.58 16 15 S 2.49 44.92 5.22 -107.50 -0.56 44.36 16 16 O -0.93 -16.80 15.20 -57.54 -0.87 -17.67 16 17 O -0.91 -19.41 17.94 -57.54 -1.03 -20.44 16 18 C -0.55 -10.10 5.92 37.16 0.22 -9.88 16 19 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 20 C -0.52 -13.64 9.11 -34.44 -0.31 -13.95 16 21 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 22 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 23 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 24 Si 0.90 20.40 29.54 -169.99 -5.02 15.37 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.43 7.20 -51.93 -0.37 0.05 16 31 H 0.12 0.75 5.21 -52.48 -0.27 0.47 16 32 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 33 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.14 1.35 7.95 -52.49 -0.42 0.94 16 36 H 0.22 1.63 6.08 -52.49 -0.32 1.32 16 37 H 0.13 2.31 8.14 -51.92 -0.42 1.89 16 38 H 0.12 1.95 8.14 -51.92 -0.42 1.53 16 39 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 359.43 15.07 5.42 5.42 Total: -1.00 -34.72 359.43 -10.20 -44.92 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -4.99 Total: 1.10 kcal Atomic # 6 Polarization: -30.76 SS G_CDS: -4.31 Total: -35.07 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 1.18 Total: -38.00 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -1.91 Total: -38.11 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 44.92 SS G_CDS: -0.56 Total: 44.36 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.72 -10.20 -44.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274756809.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.718 kcal (2) G-P(sol) polarization free energy of solvation -34.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds