Wall clock time and date at job start Tue Mar 31 2020 19:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47556 * 2 1 4 4 C 1.50706 * 109.46927 * 120.00613 * 2 1 3 5 5 C 1.38229 * 120.00177 * 59.72366 * 4 2 1 6 6 C 1.38233 * 119.99983 * 179.80743 * 5 4 2 7 7 C 1.38227 * 119.99988 * 0.40255 * 6 5 4 8 8 C 1.38237 * 120.00254 * 359.84870 * 7 6 5 9 9 C 1.38236 * 119.99556 * 239.99332 * 4 2 1 10 10 N 1.46504 * 109.46962 * 239.99997 * 2 1 3 11 11 C 1.35487 * 126.98292 * 300.00413 * 10 2 1 12 12 N 1.30519 * 107.31002 * 180.02562 * 11 10 2 13 13 N 1.28600 * 109.66926 * 359.72767 * 12 11 10 14 14 C 1.30518 * 109.67324 * 0.45263 * 13 12 11 15 15 S 1.76195 * 126.34617 * 179.82312 * 14 13 12 16 16 O 1.42098 * 104.28035 * 153.61524 * 15 14 13 17 17 O 1.42105 * 104.27718 * 25.76141 * 15 14 13 18 18 C 1.81399 * 104.45056 * 269.68784 * 15 14 13 19 19 C 1.53006 * 109.47004 * 179.97438 * 18 15 14 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 15 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99834 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00496 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47325 * 59.99531 * 24 22 20 26 26 H 1.48496 * 109.47425 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47183 * 299.99726 * 24 22 20 28 28 H 1.08994 * 109.46581 * 300.00094 * 1 2 3 29 29 H 1.09002 * 109.46623 * 59.99706 * 1 2 3 30 30 H 1.08998 * 109.47289 * 179.97438 * 1 2 3 31 31 H 1.08006 * 120.00003 * 359.97438 * 5 4 2 32 32 H 1.08007 * 120.00107 * 180.22926 * 6 5 4 33 33 H 1.08004 * 120.00129 * 179.82831 * 7 6 5 34 34 H 1.07999 * 120.00375 * 179.97438 * 8 7 6 35 35 H 1.08001 * 120.00241 * 359.97438 * 9 4 2 36 36 H 1.08002 * 126.35001 * 0.02562 * 11 10 2 37 37 H 1.09000 * 109.47234 * 60.00085 * 18 15 14 38 38 H 1.09001 * 109.47232 * 299.99596 * 18 15 14 39 39 H 1.08993 * 109.46955 * 300.00150 * 19 18 15 40 40 H 1.09000 * 109.47050 * 59.99979 * 19 18 15 41 41 H 0.96992 * 120.00032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2305 5 6 1.6937 -2.0323 1.4520 6 6 2.1577 -2.6852 2.5786 7 6 2.9535 -2.0139 3.4878 8 6 3.2879 -0.6906 3.2690 9 6 2.8272 -0.0388 2.1404 10 7 2.0183 -0.6906 -1.1962 11 6 1.7797 -1.9767 -1.5493 12 7 2.3970 -2.1901 -2.6794 13 7 2.9988 -1.1169 -3.0532 14 6 2.8008 -0.1730 -2.1738 15 16 3.4283 1.4718 -2.2481 16 8 2.4964 2.2367 -1.4959 17 8 3.6217 1.7108 -3.6355 18 6 5.0233 1.3870 -1.3882 19 6 5.6757 2.7710 -1.3861 20 6 7.0005 2.7007 -0.6712 21 1 7.3427 1.7628 -0.2593 22 6 7.7752 3.8338 -0.5421 23 7 7.3583 4.9761 -1.0433 24 14 9.4176 3.7466 0.3433 25 1 10.3056 2.7825 -0.3545 26 1 10.0508 5.0898 0.3456 27 1 9.2025 3.2979 1.7425 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.0687 -2.5557 0.7434 32 1 1.8961 -3.7190 2.7498 33 1 3.3138 -2.5232 4.3695 34 1 3.9094 -0.1660 3.9796 35 1 3.0885 0.9950 1.9693 36 1 1.1884 -2.6928 -0.9979 37 1 5.6751 0.6793 -1.9006 38 1 4.8654 1.0577 -0.3612 39 1 5.8336 3.0998 -2.4131 40 1 5.0240 3.4790 -0.8740 41 1 7.9034 5.7732 -0.9528 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274756809.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:50 Heat of formation + Delta-G solvation = 12.307570 kcal Electronic energy + Delta-G solvation = -26965.510398 eV Core-core repulsion = 23166.510137 eV Total energy + Delta-G solvation = -3799.000261 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.53260 -40.50127 -38.57074 -37.36332 -37.08361 -35.95501 -33.22159 -33.04127 -32.33336 -31.77308 -30.29928 -27.68738 -26.01616 -24.84701 -23.94069 -23.50366 -23.19524 -22.08723 -20.36929 -19.28503 -18.56353 -18.12144 -17.65690 -17.42158 -17.26958 -16.88935 -16.59060 -16.48466 -15.93433 -15.70293 -15.29714 -14.84241 -14.48527 -14.43168 -14.26864 -13.86125 -13.79211 -13.57013 -13.46668 -13.36061 -13.18607 -12.93701 -12.87905 -12.75209 -12.53400 -12.29699 -12.24441 -12.23634 -12.04205 -11.81452 -11.77138 -11.45673 -11.31718 -10.97835 -10.62049 -9.90707 -9.88037 -8.24902 -6.38413 -1.33422 0.01236 0.17922 0.41511 1.21145 1.38174 1.43676 1.46321 1.54087 1.56672 2.38605 2.52574 2.70656 2.83884 3.09528 3.16011 3.33295 3.55739 3.70214 3.85100 3.87137 4.00987 4.05129 4.10744 4.24897 4.27460 4.44406 4.51749 4.53710 4.61567 4.64413 4.82471 4.94104 5.04194 5.06770 5.22006 5.24224 5.41847 5.46855 5.51921 5.56592 5.68441 5.99471 6.04050 6.73436 7.12857 7.31531 8.86948 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.010589 B = 0.004472 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.558126 B = 6260.147756 C = 7910.550778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.134 3.866 3 H 0.129 0.871 4 C -0.121 4.121 5 C -0.111 4.111 6 C -0.118 4.118 7 C -0.112 4.112 8 C -0.126 4.126 9 C -0.120 4.120 10 N -0.406 5.406 11 C 0.200 3.800 12 N -0.326 5.326 13 N -0.224 5.224 14 C -0.365 4.365 15 S 2.516 3.484 16 O -0.939 6.939 17 O -0.946 6.946 18 C -0.547 4.547 19 C 0.022 3.978 20 C -0.538 4.538 21 H 0.075 0.925 22 C 0.004 3.996 23 N -0.930 5.930 24 Si 0.969 3.031 25 H -0.268 1.268 26 H -0.284 1.284 27 H -0.261 1.261 28 H 0.105 0.895 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.146 0.854 32 H 0.154 0.846 33 H 0.146 0.854 34 H 0.137 0.863 35 H 0.125 0.875 36 H 0.273 0.727 37 H 0.145 0.855 38 H 0.152 0.848 39 H 0.014 0.986 40 H 0.024 0.976 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.582 -16.067 12.154 24.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.034 3.966 3 H 0.146 0.854 4 C -0.122 4.122 5 C -0.129 4.129 6 C -0.136 4.136 7 C -0.130 4.130 8 C -0.143 4.143 9 C -0.138 4.138 10 N -0.094 5.094 11 C -0.087 4.087 12 N -0.169 5.169 13 N -0.070 5.070 14 C -0.710 4.710 15 S 2.693 3.307 16 O -0.935 6.935 17 O -0.943 6.943 18 C -0.682 4.682 19 C -0.017 4.017 20 C -0.577 4.577 21 H 0.093 0.907 22 C -0.195 4.195 23 N -0.569 5.569 24 Si 0.792 3.208 25 H -0.193 1.193 26 H -0.209 1.209 27 H -0.186 1.186 28 H 0.123 0.877 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.163 0.837 32 H 0.171 0.829 33 H 0.164 0.836 34 H 0.155 0.845 35 H 0.143 0.857 36 H 0.288 0.712 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.032 0.968 40 H 0.042 0.958 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.593 -15.921 10.519 24.023 hybrid contribution 0.680 0.434 1.311 1.540 sum -13.914 -15.487 11.830 23.946 Atomic orbital electron populations 1.22222 0.88830 1.05243 1.04864 1.21371 0.98918 0.97720 0.78641 0.85381 1.19703 1.01168 0.95944 0.95384 1.21315 0.99789 0.93114 0.98636 1.21505 0.97207 1.01229 0.93663 1.21619 0.97038 0.94315 1.00063 1.21449 0.99772 0.95764 0.97361 1.21349 0.96630 1.00826 0.95011 1.46706 1.34072 1.10787 1.17815 1.27715 0.99972 0.86294 0.94713 1.74203 1.12103 1.18414 1.12209 1.74205 1.15547 0.95779 1.21473 1.38022 1.12388 1.24306 0.96311 1.05659 0.78324 0.71182 0.75556 1.93470 1.61445 1.65711 1.72860 1.93539 1.86943 1.81990 1.31811 1.30015 1.15098 1.08981 1.14057 1.18927 0.96936 0.87916 0.97881 1.21375 1.03337 0.96213 1.36812 0.90671 1.25990 1.02349 0.94866 0.96285 1.70070 1.39968 1.00672 1.46152 0.85441 0.78518 0.77440 0.79354 1.19257 1.20945 1.18556 0.87673 0.91786 0.88840 0.83691 0.82882 0.83584 0.84485 0.85654 0.71179 0.83707 0.83025 0.96812 0.95752 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.06 71.98 0.65 -1.58 16 2 C 0.13 2.78 3.09 44.25 0.14 2.92 16 3 H 0.13 3.16 5.03 -2.39 -0.01 3.15 16 4 C -0.12 -2.18 4.97 -19.87 -0.10 -2.28 16 5 C -0.11 -1.42 8.31 22.27 0.19 -1.24 16 6 C -0.12 -1.36 10.05 22.27 0.22 -1.13 16 7 C -0.11 -1.48 10.05 22.27 0.22 -1.26 16 8 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 9 C -0.12 -2.37 9.67 22.27 0.22 -2.15 16 10 N -0.41 -10.17 2.59 -511.74 -1.33 -11.50 16 11 C 0.20 4.35 10.99 180.11 1.98 6.33 16 12 N -0.33 -10.14 12.21 -59.99 -0.73 -10.87 16 13 N -0.22 -8.24 12.20 -57.90 -0.71 -8.95 16 14 C -0.36 -12.12 7.68 180.11 1.38 -10.73 16 15 S 2.52 93.52 5.22 -56.49 -0.29 93.22 16 16 O -0.94 -34.76 15.20 -127.65 -1.94 -36.70 16 17 O -0.95 -42.40 17.94 -127.65 -2.29 -44.69 16 18 C -0.55 -20.44 5.92 71.98 0.43 -20.01 16 19 C 0.02 1.11 4.98 29.85 0.15 1.26 16 20 C -0.54 -28.48 9.11 25.60 0.23 -28.25 16 21 H 0.08 3.69 7.74 -2.91 -0.02 3.66 16 22 C 0.00 0.24 5.46 84.65 0.46 0.70 16 23 N -0.93 -54.24 13.29 21.45 0.28 -53.95 16 24 Si 0.97 41.79 29.54 68.60 2.03 43.81 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 26 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 27 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 28 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 0.81 7.20 -2.39 -0.02 0.79 16 31 H 0.15 0.99 5.21 -2.91 -0.02 0.97 16 32 H 0.15 0.90 8.06 -2.91 -0.02 0.87 16 33 H 0.15 1.24 8.06 -2.91 -0.02 1.22 16 34 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.13 2.59 7.95 -2.91 -0.02 2.57 16 36 H 0.27 2.52 6.08 -2.91 -0.02 2.50 16 37 H 0.14 5.07 8.14 -2.39 -0.02 5.05 16 38 H 0.15 4.74 8.14 -2.39 -0.02 4.72 16 39 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -77.54 359.43 2.47 -75.07 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 1.06 Total: 13.86 kcal Atomic # 6 Polarization: -65.70 SS G_CDS: 6.39 Total: -59.31 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -2.48 Total: -85.27 kcal Atomic # 8 Polarization: -77.15 SS G_CDS: -4.23 Total: -81.38 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 16 Polarization: 93.52 SS G_CDS: -0.29 Total: 93.22 kcal Total: -77.54 2.47 -75.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274756809.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.379 kcal (2) G-P(sol) polarization free energy of solvation -77.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds