Wall clock time and date at job start Tue Mar 31 2020 18:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46958 * 2 1 4 4 N 1.46501 * 109.46560 * 240.00185 * 2 1 3 5 5 C 1.34963 * 125.97455 * 84.13740 * 4 2 1 6 6 C 1.35245 * 107.85963 * 179.83445 * 5 4 2 7 7 C 1.40424 * 107.86580 * 0.41731 * 6 5 4 8 8 N 1.39984 * 125.97738 * 179.73491 * 7 6 5 9 9 S 1.65597 * 120.00306 * 185.31296 * 8 7 6 10 10 O 1.42104 * 106.40050 * 49.54634 * 9 8 7 11 11 O 1.42097 * 106.40796 * 182.46600 * 9 8 7 12 12 C 1.76201 * 107.21974 * 296.01131 * 9 8 7 13 13 C 1.37637 * 120.13222 * 115.51120 * 12 9 8 14 14 C 1.38614 * 120.24719 * 180.02562 * 13 12 9 15 15 C 1.38656 * 120.50243 * 359.97438 * 14 13 12 16 16 C 1.37594 * 120.24993 * 0.02562 * 15 14 13 17 17 C 1.40698 * 120.12308 * 295.23566 * 12 9 8 18 18 C 1.41403 * 120.24751 * 359.97438 * 17 12 9 19 19 H 1.08005 * 119.99277 * 28.75458 * 18 17 12 20 20 C 1.39939 * 120.00350 * 208.75656 * 18 17 12 21 21 N 1.30831 * 120.00066 * 10.63463 * 20 18 17 22 22 Si 1.86796 * 120.00005 * 190.64313 * 20 18 17 23 23 H 1.48493 * 109.47580 * 94.98598 * 22 20 18 24 24 H 1.48506 * 109.47143 * 214.98584 * 22 20 18 25 25 H 1.48504 * 109.47081 * 334.98145 * 22 20 18 26 26 N 1.31221 * 108.04707 * 359.74104 * 7 6 5 27 27 H 1.08996 * 109.47391 * 64.79547 * 1 2 3 28 28 H 1.08999 * 109.47322 * 184.80005 * 1 2 3 29 29 H 1.09005 * 109.47231 * 304.79473 * 1 2 3 30 30 H 1.08994 * 109.46977 * 119.99949 * 2 1 3 31 31 H 1.09001 * 109.47605 * 299.99973 * 3 2 1 32 32 H 1.08998 * 109.47447 * 60.00032 * 3 2 1 33 33 H 1.09002 * 109.46901 * 180.02562 * 3 2 1 34 34 H 1.08002 * 126.06613 * 359.97438 * 5 4 2 35 35 H 1.08000 * 126.06449 * 180.16268 * 6 5 4 36 36 H 0.96995 * 120.00216 * 5.31966 * 8 7 6 37 37 H 1.07999 * 119.87344 * 0.02562 * 13 12 9 38 38 H 1.08002 * 119.74440 * 179.97438 * 14 13 12 39 39 H 1.07998 * 119.87310 * 180.02562 * 15 14 13 40 40 H 1.08001 * 120.13007 * 179.97438 * 16 15 14 41 41 H 0.96991 * 119.99930 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1772 -0.1419 -2.4190 6 6 2.6496 -1.1020 -3.2462 7 6 2.7759 -2.2869 -2.5032 8 7 3.2277 -3.5189 -2.9905 9 16 3.1945 -4.8574 -2.0160 10 8 1.8891 -4.9148 -1.4575 11 8 3.7640 -5.9179 -2.7711 12 6 4.2964 -4.5538 -0.6750 13 6 3.8124 -4.4648 0.6104 14 6 4.6771 -4.2255 1.6671 15 6 6.0370 -4.0736 1.4431 16 6 6.5430 -4.1586 0.1665 17 6 5.6753 -4.4070 -0.9134 18 6 6.1848 -4.5028 -2.2289 19 1 5.5648 -4.2275 -3.0694 20 6 7.4922 -4.9541 -2.4419 21 7 8.1708 -5.4820 -1.4557 22 14 8.2686 -4.8025 -4.1341 23 1 9.0668 -3.5523 -4.2024 24 1 9.1543 -5.9692 -4.3786 25 1 7.2019 -4.7659 -5.1666 26 7 2.3961 -2.0372 -1.2722 27 1 -0.3634 0.4376 -0.9298 28 1 -0.3634 -1.0240 0.0860 29 1 -0.3634 0.5864 0.8440 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.9669 0.8826 -2.6885 35 1 2.8837 -0.9802 -4.2934 36 1 3.5604 -3.5887 -3.8989 37 1 2.7550 -4.5819 0.7964 38 1 4.2885 -4.1568 2.6724 39 1 6.7015 -3.8878 2.2740 40 1 7.6025 -4.0396 -0.0058 41 1 9.0770 -5.7945 -1.6033 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280978206.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:26 Heat of formation + Delta-G solvation = 22.365601 kcal Electronic energy + Delta-G solvation = -27495.240446 eV Core-core repulsion = 23696.676334 eV Total energy + Delta-G solvation = -3798.564112 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.96771 -37.51247 -36.32929 -36.04932 -34.85265 -33.95108 -33.71534 -30.17591 -29.80262 -29.45162 -28.68479 -27.44462 -25.48232 -22.92464 -21.59491 -21.13075 -20.79942 -20.15820 -18.26985 -17.64911 -17.22925 -16.65193 -16.26936 -15.77132 -15.38383 -15.04631 -14.41308 -14.34075 -14.19190 -13.46584 -13.26843 -13.24095 -13.15970 -12.98039 -12.69139 -12.49217 -12.31337 -11.89226 -11.67696 -11.52551 -11.34739 -11.25792 -11.18330 -11.09665 -11.05648 -11.01126 -10.88820 -10.67551 -10.44419 -10.14008 -9.83036 -9.40361 -9.17448 -8.58142 -7.95606 -7.93735 -7.50471 -6.97188 -4.71072 1.41686 2.19126 2.41141 2.60525 2.80768 2.99446 3.04758 3.16899 3.21374 3.80899 3.82694 4.45764 4.47870 4.73404 4.78000 4.88804 4.97364 5.13842 5.29265 5.34939 5.45922 5.49672 5.60580 5.70183 5.83938 5.91203 6.00468 6.03717 6.10394 6.14993 6.34056 6.47796 6.80578 6.88851 7.03689 7.14502 7.30513 7.36185 7.41252 7.58578 7.73141 7.88989 7.95485 8.10269 8.34480 8.55214 8.71945 9.95710 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012551 B = 0.004861 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.334369 B = 5758.217185 C = 6063.562157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.158 3.842 3 C -0.163 4.163 4 N -0.361 5.361 5 C 0.068 3.932 6 C -0.288 4.288 7 C 0.329 3.671 8 N -1.019 6.019 9 S 2.690 3.310 10 O -0.976 6.976 11 O -0.957 6.957 12 C -0.756 4.756 13 C 0.017 3.983 14 C -0.251 4.251 15 C -0.074 4.074 16 C -0.160 4.160 17 C 0.188 3.812 18 C -0.450 4.450 19 H 0.082 0.918 20 C 0.081 3.919 21 N -0.779 5.779 22 Si 0.915 3.085 23 H -0.266 1.266 24 H -0.272 1.272 25 H -0.254 1.254 26 N -0.302 5.302 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.171 0.829 35 H 0.148 0.852 36 H 0.427 0.573 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.124 0.876 41 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.409 13.101 -1.188 15.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.056 3.944 3 C -0.221 4.221 4 N -0.145 5.145 5 C -0.079 4.079 6 C -0.321 4.321 7 C 0.070 3.930 8 N -0.768 5.768 9 S 2.789 3.211 10 O -0.966 6.966 11 O -0.947 6.947 12 C -0.853 4.853 13 C -0.003 4.003 14 C -0.272 4.272 15 C -0.093 4.093 16 C -0.180 4.180 17 C 0.183 3.817 18 C -0.478 4.478 19 H 0.100 0.900 20 C -0.140 4.140 21 N -0.402 5.402 22 Si 0.739 3.261 23 H -0.191 1.191 24 H -0.197 1.197 25 H -0.178 1.178 26 N -0.131 5.131 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.123 0.877 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.188 0.812 35 H 0.165 0.835 36 H 0.263 0.737 37 H 0.125 0.875 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.142 0.858 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.997 11.759 0.092 14.221 hybrid contribution 1.328 0.712 -1.467 2.103 sum -6.669 12.471 -1.376 14.209 Atomic orbital electron populations 1.22253 0.93918 1.03557 1.02577 1.21198 0.94500 0.92379 0.86343 1.22188 1.02577 0.94117 1.03225 1.48368 1.51515 1.06600 1.08012 1.22225 1.00756 0.99452 0.85448 1.21111 1.17488 0.91940 1.01564 1.18710 0.95837 0.86865 0.91637 1.53304 1.75634 1.20388 1.27499 1.01565 0.73682 0.71938 0.73882 1.93478 1.38682 1.85526 1.78940 1.93570 1.79417 1.50397 1.71365 1.29618 1.08974 1.34818 1.11855 1.20157 0.97652 0.91081 0.91404 1.20455 0.93903 1.15822 0.97013 1.20884 0.94628 0.97466 0.96355 1.21457 1.00085 1.04685 0.91771 1.17017 0.88562 0.82642 0.93470 1.19791 0.98121 1.37113 0.92818 0.89954 1.25920 0.96540 0.91888 0.99642 1.69781 1.11164 1.25904 1.33357 0.86156 0.79665 0.78864 0.81464 1.19090 1.19685 1.17758 1.77693 1.25603 0.93798 1.16010 0.92086 0.91290 0.90783 0.87721 0.91722 0.90194 0.91307 0.81232 0.83476 0.73671 0.87457 0.88891 0.88970 0.85794 0.90230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 9.52 37.16 0.35 -1.20 16 2 C 0.16 1.78 3.92 -67.93 -0.27 1.51 16 3 C -0.16 -1.29 8.85 37.16 0.33 -0.96 16 4 N -0.36 -5.44 3.52 -54.88 -0.19 -5.63 16 5 C 0.07 0.87 10.59 -17.24 -0.18 0.69 16 6 C -0.29 -4.31 10.83 -39.82 -0.43 -4.74 16 7 C 0.33 6.27 7.68 -154.55 -1.19 5.08 16 8 N -1.02 -20.06 5.01 31.39 0.16 -19.90 16 9 S 2.69 63.40 4.69 -107.50 -0.50 62.90 16 10 O -0.98 -24.07 16.36 -57.17 -0.94 -25.00 16 11 O -0.96 -24.56 16.59 -57.17 -0.95 -25.51 16 12 C -0.76 -19.15 5.70 -38.87 -0.22 -19.37 16 13 C 0.02 0.41 9.53 -39.66 -0.38 0.03 16 14 C -0.25 -5.76 10.05 -39.29 -0.39 -6.15 16 15 C -0.07 -1.73 10.02 -39.66 -0.40 -2.13 16 16 C -0.16 -4.10 8.66 -38.87 -0.34 -4.44 16 17 C 0.19 4.98 5.55 -106.82 -0.59 4.38 16 18 C -0.45 -11.62 7.65 -37.74 -0.29 -11.91 16 19 H 0.08 1.99 5.76 -52.48 -0.30 1.69 16 20 C 0.08 1.99 5.25 -17.34 -0.09 1.89 16 21 N -0.78 -19.52 10.86 55.55 0.60 -18.91 16 22 Si 0.92 18.26 29.57 -169.99 -5.03 13.24 16 23 H -0.27 -5.09 7.11 56.52 0.40 -4.68 16 24 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 25 H -0.25 -4.99 7.11 56.52 0.40 -4.59 16 26 N -0.30 -6.00 11.62 31.41 0.36 -5.63 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.06 0.42 7.16 -51.93 -0.37 0.04 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.17 1.40 7.27 -52.49 -0.38 1.02 16 35 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.43 7.06 8.72 -34.46 -0.30 6.76 16 37 H 0.11 2.47 7.33 -52.49 -0.38 2.09 16 38 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 39 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 40 H 0.12 3.19 6.24 -52.49 -0.33 2.86 16 41 H 0.29 6.44 8.30 -40.82 -0.34 6.10 16 LS Contribution 357.13 15.07 5.38 5.38 Total: -1.00 -33.89 357.13 -10.19 -44.09 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -5.01 Total: 12.30 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: -4.08 Total: -37.31 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.93 Total: -50.08 kcal Atomic # 8 Polarization: -48.63 SS G_CDS: -1.88 Total: -50.51 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.24 kcal Atomic # 16 Polarization: 63.40 SS G_CDS: -0.50 Total: 62.90 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.89 -10.19 -44.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280978206.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.452 kcal (2) G-P(sol) polarization free energy of solvation -33.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds