Wall clock time and date at job start Tue Mar 31 2020 18:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46958 * 2 1 4 4 N 1.46501 * 109.46560 * 240.00185 * 2 1 3 5 5 C 1.34963 * 125.97455 * 84.13740 * 4 2 1 6 6 C 1.35245 * 107.85963 * 179.83445 * 5 4 2 7 7 C 1.40424 * 107.86580 * 0.41731 * 6 5 4 8 8 N 1.39984 * 125.97738 * 179.73491 * 7 6 5 9 9 S 1.65597 * 120.00306 * 185.31296 * 8 7 6 10 10 O 1.42104 * 106.40050 * 49.54634 * 9 8 7 11 11 O 1.42097 * 106.40796 * 182.46600 * 9 8 7 12 12 C 1.76201 * 107.21974 * 296.01131 * 9 8 7 13 13 C 1.37637 * 120.13222 * 115.51120 * 12 9 8 14 14 C 1.38614 * 120.24719 * 180.02562 * 13 12 9 15 15 C 1.38656 * 120.50243 * 359.97438 * 14 13 12 16 16 C 1.37594 * 120.24993 * 0.02562 * 15 14 13 17 17 C 1.40698 * 120.12308 * 295.23566 * 12 9 8 18 18 C 1.41403 * 120.24751 * 359.97438 * 17 12 9 19 19 H 1.08005 * 119.99277 * 28.75458 * 18 17 12 20 20 C 1.39939 * 120.00350 * 208.75656 * 18 17 12 21 21 N 1.30831 * 120.00066 * 10.63463 * 20 18 17 22 22 Si 1.86796 * 120.00005 * 190.64313 * 20 18 17 23 23 H 1.48493 * 109.47580 * 94.98598 * 22 20 18 24 24 H 1.48506 * 109.47143 * 214.98584 * 22 20 18 25 25 H 1.48504 * 109.47081 * 334.98145 * 22 20 18 26 26 N 1.31221 * 108.04707 * 359.74104 * 7 6 5 27 27 H 1.08996 * 109.47391 * 64.79547 * 1 2 3 28 28 H 1.08999 * 109.47322 * 184.80005 * 1 2 3 29 29 H 1.09005 * 109.47231 * 304.79473 * 1 2 3 30 30 H 1.08994 * 109.46977 * 119.99949 * 2 1 3 31 31 H 1.09001 * 109.47605 * 299.99973 * 3 2 1 32 32 H 1.08998 * 109.47447 * 60.00032 * 3 2 1 33 33 H 1.09002 * 109.46901 * 180.02562 * 3 2 1 34 34 H 1.08002 * 126.06613 * 359.97438 * 5 4 2 35 35 H 1.08000 * 126.06449 * 180.16268 * 6 5 4 36 36 H 0.96995 * 120.00216 * 5.31966 * 8 7 6 37 37 H 1.07999 * 119.87344 * 0.02562 * 13 12 9 38 38 H 1.08002 * 119.74440 * 179.97438 * 14 13 12 39 39 H 1.07998 * 119.87310 * 180.02562 * 15 14 13 40 40 H 1.08001 * 120.13007 * 179.97438 * 16 15 14 41 41 H 0.96991 * 119.99930 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1772 -0.1419 -2.4190 6 6 2.6496 -1.1020 -3.2462 7 6 2.7759 -2.2869 -2.5032 8 7 3.2277 -3.5189 -2.9905 9 16 3.1945 -4.8574 -2.0160 10 8 1.8891 -4.9148 -1.4575 11 8 3.7640 -5.9179 -2.7711 12 6 4.2964 -4.5538 -0.6750 13 6 3.8124 -4.4648 0.6104 14 6 4.6771 -4.2255 1.6671 15 6 6.0370 -4.0736 1.4431 16 6 6.5430 -4.1586 0.1665 17 6 5.6753 -4.4070 -0.9134 18 6 6.1848 -4.5028 -2.2289 19 1 5.5648 -4.2275 -3.0694 20 6 7.4922 -4.9541 -2.4419 21 7 8.1708 -5.4820 -1.4557 22 14 8.2686 -4.8025 -4.1341 23 1 9.0668 -3.5523 -4.2024 24 1 9.1543 -5.9692 -4.3786 25 1 7.2019 -4.7659 -5.1666 26 7 2.3961 -2.0372 -1.2722 27 1 -0.3634 0.4376 -0.9298 28 1 -0.3634 -1.0240 0.0860 29 1 -0.3634 0.5864 0.8440 30 1 1.8933 -0.5138 0.8899 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.9669 0.8826 -2.6885 35 1 2.8837 -0.9802 -4.2934 36 1 3.5604 -3.5887 -3.8989 37 1 2.7550 -4.5819 0.7964 38 1 4.2885 -4.1568 2.6724 39 1 6.7015 -3.8878 2.2740 40 1 7.6025 -4.0396 -0.0058 41 1 9.0770 -5.7945 -1.6033 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280978206.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:25 Heat of formation + Delta-G solvation = -0.058025 kcal Electronic energy + Delta-G solvation = -27496.212808 eV Core-core repulsion = 23696.676334 eV Total energy + Delta-G solvation = -3799.536474 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.14085 -39.39045 -38.14873 -37.26205 -36.80215 -35.69840 -35.08204 -32.05371 -31.37582 -30.95761 -29.83648 -28.12370 -27.37165 -24.02159 -23.42893 -22.97362 -22.16914 -21.31195 -19.92350 -19.52680 -18.47099 -18.34613 -17.78943 -17.31421 -17.09499 -16.29268 -16.07360 -15.99691 -15.24039 -15.13491 -14.96969 -14.50633 -14.46367 -14.32196 -14.03589 -13.70248 -13.33968 -13.17353 -13.12517 -13.06819 -13.01754 -12.95379 -12.88864 -12.80881 -12.65103 -12.53066 -12.13337 -12.06932 -11.93577 -11.67045 -11.42078 -11.19327 -11.02335 -9.86296 -9.81708 -9.42716 -9.19172 -8.79187 -6.63635 -0.37667 0.53086 0.98563 1.07730 1.36187 1.46799 1.50049 1.52776 1.93767 2.16228 2.25966 2.62417 2.88674 3.44745 3.53272 3.76046 3.94552 4.01927 4.05387 4.18717 4.31713 4.48249 4.58648 4.68858 4.71132 4.80289 4.87961 4.89711 4.90649 4.97845 4.99045 5.13911 5.22681 5.28274 5.30336 5.50121 5.64075 5.69938 5.80935 5.98807 6.01835 6.06374 6.31968 6.44861 6.65975 6.81738 6.85419 8.17041 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.012551 B = 0.004861 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.334369 B = 5758.217185 C = 6063.562157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.144 3.856 3 C -0.153 4.153 4 N -0.361 5.361 5 C 0.088 3.912 6 C -0.301 4.301 7 C 0.295 3.705 8 N -1.012 6.012 9 S 2.711 3.289 10 O -0.994 6.994 11 O -0.986 6.986 12 C -0.774 4.774 13 C 0.004 3.996 14 C -0.252 4.252 15 C -0.073 4.073 16 C -0.186 4.186 17 C 0.162 3.838 18 C -0.479 4.479 19 H 0.088 0.912 20 C 0.038 3.962 21 N -0.808 5.808 22 Si 0.979 3.021 23 H -0.250 1.250 24 H -0.265 1.265 25 H -0.251 1.251 26 N -0.358 5.358 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.103 0.897 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.054 0.946 34 H 0.224 0.776 35 H 0.174 0.826 36 H 0.439 0.561 37 H 0.111 0.889 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.116 0.884 41 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.730 15.979 -1.820 17.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.044 3.956 3 C -0.211 4.211 4 N -0.145 5.145 5 C -0.059 4.059 6 C -0.334 4.334 7 C 0.038 3.962 8 N -0.766 5.766 9 S 2.810 3.190 10 O -0.984 6.984 11 O -0.977 6.977 12 C -0.869 4.869 13 C -0.016 4.016 14 C -0.272 4.272 15 C -0.091 4.091 16 C -0.206 4.206 17 C 0.158 3.842 18 C -0.507 4.507 19 H 0.106 0.894 20 C -0.180 4.180 21 N -0.432 5.432 22 Si 0.797 3.203 23 H -0.174 1.174 24 H -0.189 1.189 25 H -0.174 1.174 26 N -0.188 5.188 27 H 0.092 0.908 28 H 0.057 0.943 29 H 0.122 0.878 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.123 0.877 33 H 0.073 0.927 34 H 0.241 0.759 35 H 0.191 0.809 36 H 0.277 0.723 37 H 0.129 0.871 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.134 0.866 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.317 14.635 -0.509 16.841 hybrid contribution 1.321 -0.087 -1.142 1.748 sum -6.996 14.548 -1.651 16.227 Atomic orbital electron populations 1.22208 0.92383 1.02314 1.04598 1.21599 0.95735 0.93817 0.84469 1.22172 1.01621 0.91661 1.05659 1.48752 1.50681 1.05210 1.09855 1.23024 0.97995 1.01088 0.83828 1.21496 1.18128 0.90634 1.03093 1.19096 0.97218 0.87330 0.92602 1.52731 1.76067 1.20309 1.27454 1.00714 0.72881 0.72000 0.73444 1.93441 1.39312 1.86165 1.79471 1.93516 1.79789 1.52521 1.71859 1.29858 1.09203 1.34837 1.13030 1.20369 0.98138 0.91404 0.91674 1.20829 0.93681 1.14495 0.98198 1.21226 0.95366 0.96062 0.96492 1.21532 0.99815 1.06429 0.92842 1.17348 0.89213 0.83347 0.94332 1.20102 0.99412 1.38284 0.92936 0.89400 1.26843 0.96495 0.91005 1.03618 1.69817 1.11843 1.26222 1.35339 0.85229 0.78907 0.79633 0.76495 1.17373 1.18895 1.17399 1.77540 1.27089 0.97058 1.17108 0.90752 0.94346 0.87802 0.89934 0.89330 0.87729 0.92714 0.75926 0.80881 0.72263 0.87134 0.85703 0.85847 0.86621 0.89316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 9.52 71.98 0.69 -1.96 16 2 C 0.14 3.02 3.92 44.99 0.18 3.20 16 3 C -0.15 -1.89 8.85 71.98 0.64 -1.26 16 4 N -0.36 -10.42 3.52 -327.54 -1.15 -11.57 16 5 C 0.09 2.00 10.59 83.52 0.88 2.88 16 6 C -0.30 -8.48 10.83 22.11 0.24 -8.24 16 7 C 0.30 11.32 7.68 133.39 1.02 12.34 16 8 N -1.01 -40.85 5.01 -54.61 -0.27 -41.12 16 9 S 2.71 132.43 4.69 -56.49 -0.26 132.17 16 10 O -0.99 -50.83 16.36 -128.00 -2.09 -52.92 16 11 O -0.99 -52.51 16.59 -128.00 -2.12 -54.63 16 12 C -0.77 -40.52 5.70 22.73 0.13 -40.39 16 13 C 0.00 0.20 9.53 22.22 0.21 0.41 16 14 C -0.25 -11.48 10.05 22.46 0.23 -11.26 16 15 C -0.07 -3.39 10.02 22.22 0.22 -3.17 16 16 C -0.19 -9.79 8.66 22.73 0.20 -9.59 16 17 C 0.16 8.87 5.55 -21.29 -0.12 8.75 16 18 C -0.48 -25.43 7.65 23.46 0.18 -25.25 16 19 H 0.09 4.37 5.76 -2.91 -0.02 4.35 16 20 C 0.04 1.89 5.25 85.25 0.45 2.34 16 21 N -0.81 -41.29 10.86 21.83 0.24 -41.05 16 22 Si 0.98 37.16 29.57 68.60 2.03 39.19 16 23 H -0.25 -8.76 7.11 99.48 0.71 -8.06 16 24 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 25 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 26 N -0.36 -14.41 11.62 -54.55 -0.63 -15.05 16 27 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.09 0.69 7.16 -2.39 -0.02 0.67 16 32 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.22 2.44 7.27 -2.91 -0.02 2.42 16 35 H 0.17 3.73 8.06 -2.91 -0.02 3.71 16 36 H 0.44 14.85 8.72 -96.76 -0.84 14.01 16 37 H 0.11 5.27 7.33 -2.91 -0.02 5.25 16 38 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 39 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 40 H 0.12 6.15 6.24 -2.91 -0.02 6.13 16 41 H 0.30 13.46 8.30 -92.71 -0.77 12.69 16 Total: -1.00 -77.35 357.13 1.09 -76.26 By element: Atomic # 1 Polarization: 39.69 SS G_CDS: 0.23 Total: 39.92 kcal Atomic # 6 Polarization: -76.32 SS G_CDS: 5.14 Total: -71.18 kcal Atomic # 7 Polarization: -106.97 SS G_CDS: -1.82 Total: -108.79 kcal Atomic # 8 Polarization: -103.33 SS G_CDS: -4.22 Total: -107.55 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 2.03 Total: 39.19 kcal Atomic # 16 Polarization: 132.43 SS G_CDS: -0.26 Total: 132.17 kcal Total: -77.35 1.09 -76.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280978206.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.200 kcal (2) G-P(sol) polarization free energy of solvation -77.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds