Wall clock time and date at job start Tue Mar 31 2020 18:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46692 * 191.13103 * 3 2 1 5 5 C 1.37103 * 119.99804 * 263.92428 * 4 3 2 6 6 H 1.07997 * 120.00078 * 199.74842 * 5 4 3 7 7 C 1.38944 * 119.99781 * 19.75639 * 5 4 3 8 8 N 1.31410 * 120.00475 * 21.74386 * 7 5 4 9 9 Si 1.86802 * 119.99650 * 201.74377 * 7 5 4 10 10 H 1.48503 * 109.47421 * 60.00142 * 9 7 5 11 11 H 1.48505 * 109.47159 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47383 * 299.99913 * 9 7 5 13 13 C 1.34770 * 120.00223 * 83.92673 * 4 3 2 14 14 O 1.21293 * 120.00400 * 179.97438 * 13 4 3 15 15 C 1.50700 * 120.00160 * 0.02562 * 13 4 3 16 16 C 1.50694 * 109.47365 * 180.02562 * 15 13 4 17 17 C 1.33452 * 122.71746 * 124.95265 * 16 15 13 18 18 S 1.76166 * 108.06188 * 180.02562 * 17 16 15 19 19 C 1.70976 * 90.34285 * 359.97438 * 18 17 16 20 20 N 1.39005 * 124.94373 * 179.97438 * 19 18 17 21 21 C 1.34772 * 119.99962 * 0.02616 * 20 19 18 22 22 O 1.21284 * 120.00546 * 0.02562 * 21 20 19 23 23 C 1.50703 * 119.99928 * 179.97438 * 21 20 19 24 24 C 1.52992 * 109.47379 * 179.97438 * 23 21 20 25 25 C 1.53003 * 109.47039 * 300.00159 * 23 21 20 26 26 N 1.29621 * 110.10753 * 0.02562 * 19 18 17 27 27 H 4.40643 * 5.51483 * 179.97438 * 4 1 2 28 28 H 1.09001 * 109.47500 * 71.13085 * 3 2 1 29 29 H 1.09002 * 109.47513 * 311.12695 * 3 2 1 30 30 H 0.97007 * 119.99949 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47119 * 59.99409 * 15 13 4 32 32 H 1.09000 * 109.46628 * 299.99803 * 15 13 4 33 33 H 1.07997 * 125.96895 * 0.03753 * 17 16 15 34 34 H 0.97002 * 119.99318 * 180.02562 * 20 19 18 35 35 H 1.09001 * 109.46885 * 59.99493 * 23 21 20 36 36 H 1.09001 * 109.47498 * 59.99903 * 24 23 21 37 37 H 1.09001 * 109.47281 * 179.97438 * 24 23 21 38 38 H 1.08996 * 109.47175 * 300.00239 * 24 23 21 39 39 H 1.08999 * 109.47285 * 299.99939 * 25 23 21 40 40 H 1.08994 * 109.47251 * 59.99606 * 25 23 21 41 41 H 1.09001 * 109.47088 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3562 0.2667 5 6 3.4802 2.1773 -0.7751 6 1 4.1228 3.0277 -0.6017 7 6 3.0044 1.9154 -2.0540 8 7 1.9238 1.1855 -2.2165 9 14 3.9008 2.6010 -3.5426 10 1 5.2924 2.0829 -3.5645 11 1 3.1966 2.1819 -4.7810 12 1 3.9259 4.0838 -3.4658 13 6 3.2416 1.7960 1.5360 14 8 3.6457 2.9181 1.7568 15 6 2.8612 0.8932 2.6812 16 6 3.0723 1.6193 3.9847 17 6 2.1061 1.7655 4.8936 18 16 2.7683 2.6672 6.2544 19 6 4.2839 2.7601 5.4686 20 7 5.4118 3.3867 5.9858 21 6 5.3583 3.9802 7.1946 22 8 4.3262 3.9673 7.8315 23 6 6.5812 4.6590 7.7556 24 6 6.2530 5.2477 9.1291 25 6 7.7124 3.6382 7.8947 26 7 4.2277 2.1622 4.3199 27 1 -1.0503 -0.0004 -0.0003 28 1 3.0095 -0.3315 -0.9724 29 1 3.0097 -0.6751 0.7741 30 1 1.5919 1.0024 -3.1094 31 1 3.4817 -0.0027 2.6592 32 1 1.8124 0.6112 2.5885 33 1 1.0950 1.3955 4.8096 34 1 6.2374 3.3967 5.4766 35 1 6.8937 5.4581 7.0834 36 1 5.9403 4.4488 9.8015 37 1 7.1377 5.7382 9.5350 38 1 5.4473 5.9749 9.0295 39 1 7.4000 2.8390 8.5669 40 1 7.9461 3.2192 6.9161 41 1 8.5971 4.1293 8.3001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281020656.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:49 Heat of formation + Delta-G solvation = 45.888109 kcal Electronic energy + Delta-G solvation = -25759.391390 eV Core-core repulsion = 21961.847290 eV Total energy + Delta-G solvation = -3797.544100 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.71688 -39.56612 -38.18774 -35.27731 -34.99841 -34.82638 -32.19007 -31.20755 -30.81829 -27.87701 -27.51520 -26.31240 -25.34134 -24.40668 -22.81471 -21.11864 -19.94813 -18.86233 -17.98144 -17.71900 -17.20465 -16.68265 -16.29835 -16.14274 -15.90104 -14.94686 -14.78266 -14.44577 -14.27838 -14.14440 -13.71995 -13.49105 -13.18652 -12.80608 -12.76682 -12.71568 -12.41035 -12.31470 -12.08386 -11.62020 -11.58991 -11.53018 -11.45524 -11.14882 -10.94274 -10.74032 -10.50047 -10.28261 -9.97418 -9.35694 -9.33872 -9.19046 -8.87134 -8.84653 -8.38728 -7.96687 -7.77526 -6.27205 -3.80503 0.98837 1.39783 2.11431 2.17361 2.57481 3.20509 3.26002 3.27732 3.32635 3.74976 3.98175 4.08049 4.15622 4.23256 4.44934 4.50382 4.76165 4.93404 5.01813 5.12590 5.20014 5.29397 5.43716 5.49329 5.49685 5.52957 5.67195 5.72424 5.79663 5.89150 5.96039 5.98989 6.14211 6.31612 6.51085 6.74725 6.84296 7.04691 7.61816 7.62557 8.10686 8.17269 8.49780 8.83688 9.21093 9.41949 9.99824 10.73800 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.017899 B = 0.002806 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.972919 B = 9975.056092 C =11113.492143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.114 4.114 3 C 0.232 3.768 4 N -0.445 5.445 5 C -0.313 4.313 6 H 0.101 0.899 7 C 0.031 3.969 8 N -0.863 5.863 9 Si 0.919 3.081 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.463 3.537 14 O -0.564 6.564 15 C -0.065 4.065 16 C 0.130 3.870 17 C -0.314 4.314 18 S 0.209 5.791 19 C 0.235 3.765 20 N -0.620 5.620 21 C 0.514 3.486 22 O -0.506 6.506 23 C -0.106 4.106 24 C -0.134 4.134 25 C -0.149 4.149 26 N -0.471 5.471 27 H 0.198 0.802 28 H 0.106 0.894 29 H 0.063 0.937 30 H 0.267 0.733 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.174 0.826 34 H 0.423 0.577 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.731 -0.360 18.198 19.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.115 4.115 3 C 0.109 3.891 4 N -0.165 5.165 5 C -0.440 4.440 6 H 0.119 0.881 7 C -0.173 4.173 8 N -0.501 5.501 9 Si 0.746 3.254 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.250 3.750 14 O -0.446 6.446 15 C -0.108 4.108 16 C -0.003 4.003 17 C -0.454 4.454 18 S 0.458 5.542 19 C -0.132 4.132 20 N -0.270 5.270 21 C 0.300 3.700 22 O -0.380 6.380 23 C -0.127 4.127 24 C -0.192 4.192 25 C -0.206 4.206 26 N -0.192 5.192 27 H 0.216 0.784 28 H 0.124 0.876 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.191 0.809 34 H 0.261 0.739 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.275 0.540 19.270 20.274 hybrid contribution 0.244 -0.161 -2.346 2.364 sum 6.519 0.379 16.925 18.141 Atomic orbital electron populations 1.24262 0.95353 1.02497 1.05823 1.23203 0.94382 0.98019 0.95937 1.18216 0.84263 0.84868 1.01800 1.43646 1.56924 1.11375 1.04576 1.19552 1.28176 1.10931 0.85364 0.88122 1.25262 0.95038 0.97812 0.99171 1.70079 1.17996 1.38877 1.23157 0.86119 0.79570 0.79433 0.80307 1.19958 1.21126 1.19973 1.19750 0.84068 0.87864 0.83295 1.90546 1.49665 1.20550 1.83811 1.20307 1.03141 0.98177 0.89162 1.19258 0.86737 0.97912 0.96350 1.27135 1.05331 1.12293 1.00640 1.84497 1.01425 1.50642 1.17633 1.23365 0.93900 1.01370 0.94602 1.42826 1.12134 1.52656 1.19359 1.21170 0.91233 0.78036 0.79551 1.90651 1.31767 1.57741 1.57865 1.21280 0.92544 0.99114 0.99773 1.21649 1.01973 1.01531 0.94017 1.21854 0.97238 0.98546 1.02994 1.66034 1.27759 1.13149 1.12278 0.78446 0.87601 0.91949 0.92223 0.88731 0.88411 0.80869 0.73864 0.87571 0.91639 0.91534 0.91611 0.91709 0.91772 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.34 19.25 29.55 0.57 -4.78 16 2 C -0.11 -2.52 10.75 -37.12 -0.40 -2.92 16 3 C 0.23 5.08 4.91 -6.83 -0.03 5.05 16 4 N -0.45 -11.32 2.60 -117.93 -0.31 -11.63 16 5 C -0.31 -8.70 9.28 -14.93 -0.14 -8.84 16 6 H 0.10 2.97 7.42 -52.49 -0.39 2.58 16 7 C 0.03 0.82 4.83 -17.47 -0.08 0.74 16 8 N -0.86 -22.84 9.59 55.50 0.53 -22.31 16 9 Si 0.92 20.70 29.60 -169.99 -5.03 15.67 16 10 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 11 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 C 0.46 11.48 7.53 -10.99 -0.08 11.40 16 14 O -0.56 -16.06 15.11 5.55 0.08 -15.97 16 15 C -0.06 -1.26 4.80 -29.04 -0.14 -1.40 16 16 C 0.13 2.49 5.63 -84.20 -0.47 2.01 16 17 C -0.31 -5.15 11.05 29.06 0.32 -4.83 16 18 S 0.21 3.22 20.22 -107.50 -2.17 1.05 16 19 C 0.24 3.93 8.19 -87.35 -0.72 3.21 16 20 N -0.62 -7.92 5.30 -13.07 -0.07 -7.99 16 21 C 0.51 5.86 7.12 -10.99 -0.08 5.79 16 22 O -0.51 -7.16 13.45 5.55 0.07 -7.08 16 23 C -0.11 -0.76 3.25 -91.77 -0.30 -1.06 16 24 C -0.13 -0.92 8.48 37.15 0.32 -0.61 16 25 C -0.15 -0.83 9.09 37.16 0.34 -0.49 16 26 N -0.47 -9.21 9.73 -11.27 -0.11 -9.32 16 27 H 0.20 3.31 7.80 -54.07 -0.42 2.89 16 28 H 0.11 2.44 6.60 -51.93 -0.34 2.09 16 29 H 0.06 1.12 6.69 -51.93 -0.35 0.77 16 30 H 0.27 6.80 8.31 -40.82 -0.34 6.47 16 31 H 0.09 1.60 7.42 -51.93 -0.39 1.22 16 32 H 0.10 1.74 7.37 -51.93 -0.38 1.36 16 33 H 0.17 2.37 8.06 -52.49 -0.42 1.95 16 34 H 0.42 4.47 8.24 -40.82 -0.34 4.13 16 35 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.34 7.56 -51.93 -0.39 -0.06 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 LS Contribution 365.34 15.07 5.51 5.51 Total: -1.00 -35.30 365.34 -7.49 -42.79 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.09 Total: 6.02 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -0.90 Total: 3.27 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.05 Total: -51.25 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: 0.16 Total: -23.06 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -2.17 Total: 1.05 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.30 -7.49 -42.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281020656.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.677 kcal (2) G-P(sol) polarization free energy of solvation -35.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds