Wall clock time and date at job start Tue Mar 31 2020 18:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46692 * 191.13103 * 3 2 1 5 5 C 1.37103 * 119.99804 * 263.92428 * 4 3 2 6 6 H 1.07997 * 120.00078 * 199.74842 * 5 4 3 7 7 C 1.38944 * 119.99781 * 19.75639 * 5 4 3 8 8 N 1.31410 * 120.00475 * 21.74386 * 7 5 4 9 9 Si 1.86802 * 119.99650 * 201.74377 * 7 5 4 10 10 H 1.48503 * 109.47421 * 60.00142 * 9 7 5 11 11 H 1.48505 * 109.47159 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47383 * 299.99913 * 9 7 5 13 13 C 1.34770 * 120.00223 * 83.92673 * 4 3 2 14 14 O 1.21293 * 120.00400 * 179.97438 * 13 4 3 15 15 C 1.50700 * 120.00160 * 0.02562 * 13 4 3 16 16 C 1.50694 * 109.47365 * 180.02562 * 15 13 4 17 17 C 1.33452 * 122.71746 * 124.95265 * 16 15 13 18 18 S 1.76166 * 108.06188 * 180.02562 * 17 16 15 19 19 C 1.70976 * 90.34285 * 359.97438 * 18 17 16 20 20 N 1.39005 * 124.94373 * 179.97438 * 19 18 17 21 21 C 1.34772 * 119.99962 * 0.02616 * 20 19 18 22 22 O 1.21284 * 120.00546 * 0.02562 * 21 20 19 23 23 C 1.50703 * 119.99928 * 179.97438 * 21 20 19 24 24 C 1.52992 * 109.47379 * 179.97438 * 23 21 20 25 25 C 1.53003 * 109.47039 * 300.00159 * 23 21 20 26 26 N 1.29621 * 110.10753 * 0.02562 * 19 18 17 27 27 H 4.40643 * 5.51483 * 179.97438 * 4 1 2 28 28 H 1.09001 * 109.47500 * 71.13085 * 3 2 1 29 29 H 1.09002 * 109.47513 * 311.12695 * 3 2 1 30 30 H 0.97007 * 119.99949 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47119 * 59.99409 * 15 13 4 32 32 H 1.09000 * 109.46628 * 299.99803 * 15 13 4 33 33 H 1.07997 * 125.96895 * 0.03753 * 17 16 15 34 34 H 0.97002 * 119.99318 * 180.02562 * 20 19 18 35 35 H 1.09001 * 109.46885 * 59.99493 * 23 21 20 36 36 H 1.09001 * 109.47498 * 59.99903 * 24 23 21 37 37 H 1.09001 * 109.47281 * 179.97438 * 24 23 21 38 38 H 1.08996 * 109.47175 * 300.00239 * 24 23 21 39 39 H 1.08999 * 109.47285 * 299.99939 * 25 23 21 40 40 H 1.08994 * 109.47251 * 59.99606 * 25 23 21 41 41 H 1.09001 * 109.47088 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1336 1.3562 0.2667 5 6 3.4802 2.1773 -0.7751 6 1 4.1228 3.0277 -0.6017 7 6 3.0044 1.9154 -2.0540 8 7 1.9238 1.1855 -2.2165 9 14 3.9008 2.6010 -3.5426 10 1 5.2924 2.0829 -3.5645 11 1 3.1966 2.1819 -4.7810 12 1 3.9259 4.0838 -3.4658 13 6 3.2416 1.7960 1.5360 14 8 3.6457 2.9181 1.7568 15 6 2.8612 0.8932 2.6812 16 6 3.0723 1.6193 3.9847 17 6 2.1061 1.7655 4.8936 18 16 2.7683 2.6672 6.2544 19 6 4.2839 2.7601 5.4686 20 7 5.4118 3.3867 5.9858 21 6 5.3583 3.9802 7.1946 22 8 4.3262 3.9673 7.8315 23 6 6.5812 4.6590 7.7556 24 6 6.2530 5.2477 9.1291 25 6 7.7124 3.6382 7.8947 26 7 4.2277 2.1622 4.3199 27 1 -1.0503 -0.0004 -0.0003 28 1 3.0095 -0.3315 -0.9724 29 1 3.0097 -0.6751 0.7741 30 1 1.5919 1.0024 -3.1094 31 1 3.4817 -0.0027 2.6592 32 1 1.8124 0.6112 2.5885 33 1 1.0950 1.3955 4.8096 34 1 6.2374 3.3967 5.4766 35 1 6.8937 5.4581 7.0834 36 1 5.9403 4.4488 9.8015 37 1 7.1377 5.7382 9.5350 38 1 5.4473 5.9749 9.0295 39 1 7.4000 2.8390 8.5669 40 1 7.9461 3.2192 6.9161 41 1 8.5971 4.1293 8.3001 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281020656.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:48 Heat of formation + Delta-G solvation = 23.146686 kcal Electronic energy + Delta-G solvation = -25760.377532 eV Core-core repulsion = 21961.847290 eV Total energy + Delta-G solvation = -3798.530242 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.74498 -40.97639 -39.87985 -36.99772 -36.17064 -35.60479 -34.06833 -32.97672 -32.29892 -29.33757 -28.06947 -28.03492 -26.54159 -26.07601 -23.89982 -22.18348 -21.41920 -20.14204 -19.63937 -19.08692 -18.39207 -18.13826 -17.96951 -17.55517 -16.97410 -16.46363 -16.14529 -15.87642 -15.81223 -15.46389 -14.93276 -14.73870 -14.39850 -14.19983 -14.01124 -13.82641 -13.74967 -13.49667 -13.34278 -13.11564 -12.93659 -12.77840 -12.49688 -12.33929 -12.13496 -12.11813 -12.02150 -11.91133 -11.12186 -11.04888 -11.00055 -10.67413 -10.59825 -10.26902 -10.12376 -9.76177 -9.24483 -8.28047 -5.89240 -0.24337 0.18505 0.86068 1.17109 1.38873 1.42526 1.51992 1.56901 1.91387 2.03190 2.20259 2.36099 2.42426 3.07781 3.30628 3.34726 3.54894 3.92024 3.92236 3.97437 4.16021 4.18574 4.38210 4.42441 4.53199 4.67945 4.73736 4.76824 4.82623 4.84816 4.93138 4.98435 5.05183 5.17539 5.28671 5.35344 5.46593 5.50037 5.87017 6.11060 6.50453 6.68343 6.88593 7.19089 7.20922 7.46943 8.06740 8.70137 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.017899 B = 0.002806 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.972919 B = 9975.056092 C =11113.492143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.154 4.154 3 C 0.233 3.767 4 N -0.456 5.456 5 C -0.350 4.350 6 H 0.069 0.931 7 C 0.004 3.996 8 N -0.871 5.871 9 Si 0.980 3.020 10 H -0.267 1.267 11 H -0.273 1.273 12 H -0.282 1.282 13 C 0.452 3.548 14 O -0.612 6.612 15 C -0.051 4.051 16 C 0.097 3.903 17 C -0.310 4.310 18 S 0.238 5.762 19 C 0.223 3.777 20 N -0.617 5.617 21 C 0.511 3.489 22 O -0.534 6.534 23 C -0.098 4.098 24 C -0.133 4.133 25 C -0.146 4.146 26 N -0.509 5.509 27 H 0.232 0.768 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.271 0.729 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.199 0.801 34 H 0.431 0.569 35 H 0.127 0.873 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.798 -0.770 18.854 20.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.156 4.156 3 C 0.111 3.889 4 N -0.175 5.175 5 C -0.478 4.478 6 H 0.087 0.913 7 C -0.199 4.199 8 N -0.508 5.508 9 Si 0.804 3.196 10 H -0.192 1.192 11 H -0.198 1.198 12 H -0.208 1.208 13 C 0.241 3.759 14 O -0.498 6.498 15 C -0.093 4.093 16 C -0.035 4.035 17 C -0.450 4.450 18 S 0.488 5.512 19 C -0.145 4.145 20 N -0.267 5.267 21 C 0.299 3.701 22 O -0.411 6.411 23 C -0.119 4.119 24 C -0.190 4.190 25 C -0.204 4.204 26 N -0.231 5.231 27 H 0.248 0.752 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.216 0.784 34 H 0.272 0.728 35 H 0.145 0.855 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.348 0.094 19.928 20.915 hybrid contribution 0.177 0.009 -2.479 2.485 sum 6.526 0.103 17.449 18.630 Atomic orbital electron populations 1.25116 0.96305 1.00671 1.04141 1.23425 0.94950 0.99658 0.97518 1.18295 0.84690 0.83666 1.02254 1.43850 1.56829 1.12389 1.04460 1.19427 1.29497 1.11623 0.87220 0.91288 1.25915 0.95327 0.97898 1.00801 1.70168 1.18096 1.38716 1.23793 0.85213 0.78865 0.78156 0.77342 1.19173 1.19757 1.20807 1.20657 0.82848 0.88086 0.84268 1.90497 1.51654 1.22919 1.84690 1.20193 1.04293 0.97661 0.87149 1.19338 0.87668 0.99600 0.96911 1.27467 1.05934 1.11224 1.00354 1.84375 1.00439 1.49802 1.16616 1.23732 0.95543 1.00993 0.94230 1.43044 1.11563 1.52264 1.19844 1.22132 0.92222 0.77110 0.78588 1.90622 1.33255 1.58778 1.58397 1.21409 0.90849 0.99619 0.99998 1.21670 1.02739 1.00994 0.93634 1.21876 0.97227 0.98059 1.03211 1.66006 1.28691 1.14667 1.13747 0.75154 0.89296 0.88175 0.91919 0.86557 0.86747 0.78366 0.72839 0.85514 0.92647 0.88863 0.92916 0.92392 0.91520 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.49 19.25 74.32 1.43 -8.06 16 2 C -0.15 -6.65 10.75 31.12 0.33 -6.32 16 3 C 0.23 10.17 4.91 84.57 0.42 10.59 16 4 N -0.46 -23.66 2.60 -645.42 -1.68 -25.33 16 5 C -0.35 -20.10 9.28 84.04 0.78 -19.33 16 6 H 0.07 4.30 7.42 -2.91 -0.02 4.28 16 7 C 0.00 0.22 4.83 84.93 0.41 0.63 16 8 N -0.87 -45.80 9.59 21.66 0.21 -45.59 16 9 Si 0.98 42.72 29.60 68.60 2.03 44.75 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 13 C 0.45 22.94 7.53 87.66 0.66 23.60 16 14 O -0.61 -36.32 15.11 -3.07 -0.05 -36.37 16 15 C -0.05 -1.94 4.80 29.10 0.14 -1.80 16 16 C 0.10 3.69 5.63 41.45 0.23 3.93 16 17 C -0.31 -9.87 11.05 66.74 0.74 -9.13 16 18 S 0.24 7.21 20.22 -56.49 -1.14 6.07 16 19 C 0.22 7.46 8.19 179.20 1.47 8.93 16 20 N -0.62 -15.64 5.30 -313.64 -1.66 -17.30 16 21 C 0.51 11.33 7.12 87.66 0.62 11.95 16 22 O -0.53 -14.94 13.45 -3.04 -0.04 -14.98 16 23 C -0.10 -1.23 3.25 -11.54 -0.04 -1.27 16 24 C -0.13 -1.61 8.48 71.98 0.61 -1.00 16 25 C -0.15 -1.32 9.09 71.98 0.65 -0.66 16 26 N -0.51 -20.19 9.73 -189.58 -1.84 -22.03 16 27 H 0.23 6.97 7.80 -4.40 -0.03 6.94 16 28 H 0.09 4.12 6.60 -2.39 -0.02 4.11 16 29 H 0.10 3.48 6.69 -2.39 -0.02 3.46 16 30 H 0.27 13.54 8.31 -92.70 -0.77 12.76 16 31 H 0.12 3.83 7.42 -2.39 -0.02 3.81 16 32 H 0.11 3.93 7.37 -2.39 -0.02 3.91 16 33 H 0.20 5.03 8.06 -2.91 -0.02 5.00 16 34 H 0.43 9.07 8.24 -92.71 -0.76 8.31 16 35 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 37 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.05 0.78 8.10 -2.39 -0.02 0.76 16 39 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.07 0.58 7.56 -2.39 -0.02 0.57 16 41 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -78.86 365.34 4.59 -74.26 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.31 Total: 24.46 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 8.46 Total: 12.06 kcal Atomic # 7 Polarization: -105.29 SS G_CDS: -4.97 Total: -110.26 kcal Atomic # 8 Polarization: -51.26 SS G_CDS: -0.09 Total: -51.35 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 16 Polarization: 7.21 SS G_CDS: -1.14 Total: 6.07 kcal Total: -78.86 4.59 -74.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281020656.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.408 kcal (2) G-P(sol) polarization free energy of solvation -78.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds