Wall clock time and date at job start Tue Mar 31 2020 18:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47130 * 126.64222 * 3 2 1 5 5 C 1.36941 * 120.00087 * 263.93177 * 4 3 2 6 6 H 1.07999 * 120.00268 * 200.30551 * 5 4 3 7 7 C 1.38817 * 119.99705 * 20.30969 * 5 4 3 8 8 N 1.31612 * 120.00048 * 11.03201 * 7 5 4 9 9 Si 1.86794 * 119.99705 * 191.03632 * 7 5 4 10 10 H 1.48502 * 109.47568 * 89.99860 * 9 7 5 11 11 H 1.48505 * 109.47220 * 209.99794 * 9 7 5 12 12 H 1.48500 * 109.47420 * 329.99944 * 9 7 5 13 13 C 1.46503 * 120.00271 * 83.92808 * 4 3 2 14 14 C 1.52995 * 109.47180 * 270.00242 * 13 4 3 15 15 C 1.50700 * 109.47088 * 179.97438 * 14 13 4 16 16 O 1.21291 * 119.99950 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00371 * 180.02562 * 15 14 13 18 18 C 1.40048 * 120.00154 * 175.68779 * 17 15 14 19 19 C 1.38801 * 120.07866 * 28.74480 * 18 17 15 20 20 C 1.38143 * 119.95929 * 179.81007 * 19 18 17 21 21 N 1.48013 * 119.95069 * 180.21016 * 20 19 18 22 22 O 1.21798 * 120.00257 * 180.23530 * 21 20 19 23 23 O 1.21801 * 119.99638 * 0.23046 * 21 20 19 24 24 C 1.38283 * 120.10511 * 0.44210 * 20 19 18 25 25 C 1.38273 * 120.16103 * 359.79040 * 24 20 19 26 26 C 1.38308 * 120.03860 * 359.97438 * 25 24 20 27 27 F 1.35103 * 120.05292 * 179.97438 * 26 25 24 28 28 H 4.40643 * 5.51395 * 180.02562 * 4 1 2 29 29 H 1.09000 * 109.47200 * 6.64336 * 3 2 1 30 30 H 1.08997 * 109.46704 * 246.63925 * 3 2 1 31 31 H 0.97007 * 120.00203 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47146 * 150.00069 * 13 4 3 33 33 H 1.09000 * 109.46533 * 30.00483 * 13 4 3 34 34 H 1.09000 * 109.47222 * 59.99873 * 14 13 4 35 35 H 1.09000 * 109.47584 * 299.99597 * 14 13 4 36 36 H 0.97005 * 119.99489 * 355.69535 * 17 15 14 37 37 H 1.08008 * 120.02065 * 0.02562 * 19 18 17 38 38 H 1.08002 * 119.92023 * 179.76477 * 24 20 19 39 39 H 1.07990 * 119.97663 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1340 0.8252 -1.1083 5 6 3.4807 0.2395 -2.2965 6 1 4.1309 0.7586 -2.9851 7 6 2.9964 -1.0216 -2.6160 8 7 2.0407 -1.5627 -1.8908 9 14 3.7012 -1.9506 -4.0753 10 1 4.8503 -2.7779 -3.6274 11 1 2.6542 -2.8301 -4.6548 12 1 4.1595 -0.9826 -5.1039 13 6 3.2511 2.2764 -0.9454 14 6 1.9394 2.9440 -1.3633 15 6 2.0596 4.4367 -1.1952 16 8 3.0926 4.9192 -0.7813 17 7 1.0189 5.2356 -1.5037 18 6 1.0979 6.6130 -1.2628 19 6 2.3286 7.2543 -1.2890 20 6 2.4033 8.6137 -1.0549 21 7 3.7152 9.2982 -1.0875 22 8 3.7827 10.4959 -0.8770 23 8 4.7274 8.6636 -1.3248 24 6 1.2548 9.3352 -0.7855 25 6 0.0269 8.7002 -0.7535 26 6 -0.0557 7.3403 -0.9917 27 9 -1.2552 6.7195 -0.9600 28 1 -1.0501 0.0000 0.0003 29 1 3.0099 -1.0199 -0.1189 30 1 3.0091 0.4083 0.9434 31 1 1.7024 -2.4441 -2.1138 32 1 4.0631 2.6479 -1.5705 33 1 3.4606 2.5090 0.0987 34 1 1.1273 2.5725 -0.7382 35 1 1.7298 2.7113 -2.4074 36 1 0.2151 4.8565 -1.8925 37 1 3.2270 6.6914 -1.4958 38 1 1.3171 10.3972 -0.5991 39 1 -0.8680 9.2665 -0.5423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281363011.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:54 Heat of formation + Delta-G solvation = 35.421817 kcal Electronic energy + Delta-G solvation = -27812.501789 eV Core-core repulsion = 23448.290660 eV Total energy + Delta-G solvation = -4364.211128 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.111 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -49.66620 -42.36794 -40.80964 -38.93442 -36.71914 -36.34205 -35.25085 -32.36759 -31.97387 -31.63540 -30.79171 -29.23294 -26.68297 -26.16592 -24.97856 -23.73721 -22.63648 -21.32726 -20.29879 -19.73140 -18.87954 -18.37522 -17.70801 -17.56699 -17.46237 -17.11165 -16.65683 -16.42835 -16.01849 -15.45261 -14.98673 -14.71187 -14.21991 -14.08006 -13.98091 -13.71658 -13.35831 -13.22385 -13.00383 -12.47107 -12.37347 -11.72436 -11.61142 -11.43014 -11.41530 -11.27266 -11.23443 -11.13829 -10.87963 -10.48368 -10.31805 -10.08853 -9.94766 -9.76164 -9.08347 -8.92279 -8.82680 -8.47348 -7.11017 -5.87461 -3.36835 -0.54368 0.36209 0.94960 1.13499 2.35717 2.55032 2.82119 3.30703 3.32584 3.38116 3.38482 3.84781 4.05087 4.15211 4.22445 4.28830 4.43390 4.48734 4.70324 5.02119 5.14350 5.19577 5.26017 5.44825 5.53109 5.60024 5.65142 5.69880 5.88571 6.04629 6.20356 6.21896 6.50671 6.62696 6.79258 6.97240 7.23601 7.37731 7.46236 7.64592 7.88411 8.20789 9.01458 9.08461 9.65265 10.11202 11.14665 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.015419 B = 0.002757 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.478439 B =10155.216857 C =11170.349034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.085 4.085 3 C 0.262 3.738 4 N -0.585 5.585 5 C -0.265 4.265 6 H 0.076 0.924 7 C 0.004 3.996 8 N -0.897 5.897 9 Si 0.909 3.091 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.279 1.279 13 C 0.165 3.835 14 C -0.159 4.159 15 C 0.520 3.480 16 O -0.515 6.515 17 N -0.674 5.674 18 C 0.132 3.868 19 C -0.048 4.048 20 C -0.035 4.035 21 N 0.029 4.971 22 O -0.162 6.162 23 O -0.145 6.145 24 C -0.053 4.053 25 C -0.131 4.131 26 C 0.116 3.884 27 F -0.118 7.118 28 H 0.189 0.811 29 H 0.108 0.892 30 H 0.034 0.966 31 H 0.256 0.744 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.421 0.579 37 H 0.190 0.810 38 H 0.163 0.837 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.912 18.347 2.398 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.332 4.332 2 C -0.088 4.088 3 C 0.137 3.863 4 N -0.304 5.304 5 C -0.394 4.394 6 H 0.094 0.906 7 C -0.195 4.195 8 N -0.540 5.540 9 Si 0.739 3.261 10 H -0.213 1.213 11 H -0.218 1.218 12 H -0.205 1.205 13 C 0.037 3.963 14 C -0.202 4.202 15 C 0.311 3.689 16 O -0.389 6.389 17 N -0.320 5.320 18 C 0.033 3.967 19 C -0.069 4.069 20 C -0.119 4.119 21 N 0.550 4.450 22 O -0.376 6.376 23 O -0.364 6.364 24 C -0.073 4.073 25 C -0.151 4.151 26 C 0.093 3.907 27 F -0.097 7.097 28 H 0.206 0.794 29 H 0.125 0.875 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.259 0.741 37 H 0.207 0.793 38 H 0.180 0.820 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.840 18.013 2.678 19.453 hybrid contribution -0.755 -0.720 -1.173 1.570 sum -7.596 17.293 1.506 18.947 Atomic orbital electron populations 1.24174 0.95316 1.06807 1.06947 1.24365 0.95275 0.94734 0.94455 1.17976 0.82705 0.98009 0.87576 1.44180 1.74382 0.99786 1.12040 1.19311 1.23600 1.00192 0.96277 0.90585 1.25038 0.96786 0.99081 0.98597 1.70001 1.26838 1.16899 1.40297 0.86195 0.78133 0.79792 0.82028 1.21277 1.21791 1.20490 1.20724 0.92496 0.83862 0.99233 1.22751 1.05916 0.86158 1.05336 1.21980 0.81793 0.90538 0.74605 1.90640 1.28259 1.76339 1.43679 1.43971 1.21264 1.03495 1.63291 1.17563 0.91935 0.85512 1.01657 1.21333 1.00109 0.91387 0.94112 1.20943 0.83818 0.93291 1.13819 1.43457 1.02725 1.00940 0.97854 1.94521 1.93179 0.97410 1.52505 1.94616 1.24422 1.66535 1.50804 1.20820 0.89130 1.01914 0.95476 1.20945 0.99035 0.92069 1.03021 1.17756 0.80280 0.91423 1.01221 1.91576 1.42124 1.82621 1.93351 0.79373 0.87484 0.94780 0.93367 0.92229 0.93197 0.88594 0.88127 0.74126 0.79336 0.81973 0.81946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -6.57 19.25 29.55 0.57 -6.00 16 2 C -0.09 -1.92 10.50 -37.12 -0.39 -2.31 16 3 C 0.26 5.90 5.44 -6.83 -0.04 5.86 16 4 N -0.59 -13.35 2.51 -176.57 -0.44 -13.79 16 5 C -0.26 -6.66 9.70 -15.06 -0.15 -6.80 16 6 H 0.08 1.89 7.84 -52.49 -0.41 1.48 16 7 C 0.00 0.10 5.11 -17.43 -0.09 0.01 16 8 N -0.90 -23.94 9.02 55.49 0.50 -23.44 16 9 Si 0.91 20.65 29.57 -169.99 -5.03 15.62 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 13 C 0.16 3.16 4.98 -4.04 -0.02 3.14 16 14 C -0.16 -2.58 5.88 -27.89 -0.16 -2.75 16 15 C 0.52 7.53 7.71 -10.99 -0.08 7.44 16 16 O -0.51 -8.69 13.06 5.55 0.07 -8.61 16 17 N -0.67 -7.64 5.28 -9.81 -0.05 -7.69 16 18 C 0.13 1.44 6.41 -83.59 -0.54 0.90 16 19 C -0.05 -0.59 8.26 -39.41 -0.33 -0.91 16 20 C -0.03 -0.39 6.85 -79.97 -0.55 -0.94 16 21 N 0.03 0.39 4.45 33.95 0.15 0.54 16 22 O -0.16 -2.10 18.44 -29.46 -0.54 -2.64 16 23 O -0.15 -2.19 18.44 -29.46 -0.54 -2.73 16 24 C -0.05 -0.41 9.55 -39.55 -0.38 -0.79 16 25 C -0.13 -0.86 10.02 -39.54 -0.40 -1.26 16 26 C 0.12 1.01 7.31 -39.26 -0.29 0.73 16 27 F -0.12 -1.04 16.87 2.25 0.04 -1.00 16 28 H 0.19 3.30 7.80 -54.09 -0.42 2.87 16 29 H 0.11 2.66 6.29 -51.93 -0.33 2.34 16 30 H 0.03 0.68 7.98 -51.93 -0.41 0.27 16 31 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.06 1.16 7.99 -51.93 -0.41 0.75 16 33 H 0.05 0.93 7.91 -51.93 -0.41 0.52 16 34 H 0.10 1.61 7.19 -51.93 -0.37 1.23 16 35 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 36 H 0.42 3.82 8.54 -40.82 -0.35 3.47 16 37 H 0.19 2.71 5.30 -52.48 -0.28 2.43 16 38 H 0.16 0.91 7.60 -52.49 -0.40 0.51 16 39 H 0.16 0.55 8.06 -52.49 -0.42 0.13 16 LS Contribution 354.88 15.07 5.35 5.35 Total: -1.00 -29.63 354.88 -7.11 -36.74 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -3.78 Total: 5.34 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -2.83 Total: -3.68 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.16 Total: -44.38 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -1.01 Total: -13.99 kcal Atomic # 9 Polarization: -1.04 SS G_CDS: 0.04 Total: -1.00 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.63 -7.11 -36.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281363011.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.164 kcal (2) G-P(sol) polarization free energy of solvation -29.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds