Wall clock time and date at job start Tue Mar 31 2020 18:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47130 * 126.64222 * 3 2 1 5 5 C 1.36941 * 120.00087 * 263.93177 * 4 3 2 6 6 H 1.07999 * 120.00268 * 200.30551 * 5 4 3 7 7 C 1.38817 * 119.99705 * 20.30969 * 5 4 3 8 8 N 1.31612 * 120.00048 * 11.03201 * 7 5 4 9 9 Si 1.86794 * 119.99705 * 191.03632 * 7 5 4 10 10 H 1.48502 * 109.47568 * 89.99860 * 9 7 5 11 11 H 1.48505 * 109.47220 * 209.99794 * 9 7 5 12 12 H 1.48500 * 109.47420 * 329.99944 * 9 7 5 13 13 C 1.46503 * 120.00271 * 83.92808 * 4 3 2 14 14 C 1.52995 * 109.47180 * 270.00242 * 13 4 3 15 15 C 1.50700 * 109.47088 * 179.97438 * 14 13 4 16 16 O 1.21291 * 119.99950 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00371 * 180.02562 * 15 14 13 18 18 C 1.40048 * 120.00154 * 175.68779 * 17 15 14 19 19 C 1.38801 * 120.07866 * 28.74480 * 18 17 15 20 20 C 1.38143 * 119.95929 * 179.81007 * 19 18 17 21 21 N 1.48013 * 119.95069 * 180.21016 * 20 19 18 22 22 O 1.21798 * 120.00257 * 180.23530 * 21 20 19 23 23 O 1.21801 * 119.99638 * 0.23046 * 21 20 19 24 24 C 1.38283 * 120.10511 * 0.44210 * 20 19 18 25 25 C 1.38273 * 120.16103 * 359.79040 * 24 20 19 26 26 C 1.38308 * 120.03860 * 359.97438 * 25 24 20 27 27 F 1.35103 * 120.05292 * 179.97438 * 26 25 24 28 28 H 4.40643 * 5.51395 * 180.02562 * 4 1 2 29 29 H 1.09000 * 109.47200 * 6.64336 * 3 2 1 30 30 H 1.08997 * 109.46704 * 246.63925 * 3 2 1 31 31 H 0.97007 * 120.00203 * 180.02562 * 8 7 5 32 32 H 1.09000 * 109.47146 * 150.00069 * 13 4 3 33 33 H 1.09000 * 109.46533 * 30.00483 * 13 4 3 34 34 H 1.09000 * 109.47222 * 59.99873 * 14 13 4 35 35 H 1.09000 * 109.47584 * 299.99597 * 14 13 4 36 36 H 0.97005 * 119.99489 * 355.69535 * 17 15 14 37 37 H 1.08008 * 120.02065 * 0.02562 * 19 18 17 38 38 H 1.08002 * 119.92023 * 179.76477 * 24 20 19 39 39 H 1.07990 * 119.97663 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1340 0.8252 -1.1083 5 6 3.4807 0.2395 -2.2965 6 1 4.1309 0.7586 -2.9851 7 6 2.9964 -1.0216 -2.6160 8 7 2.0407 -1.5627 -1.8908 9 14 3.7012 -1.9506 -4.0753 10 1 4.8503 -2.7779 -3.6274 11 1 2.6542 -2.8301 -4.6548 12 1 4.1595 -0.9826 -5.1039 13 6 3.2511 2.2764 -0.9454 14 6 1.9394 2.9440 -1.3633 15 6 2.0596 4.4367 -1.1952 16 8 3.0926 4.9192 -0.7813 17 7 1.0189 5.2356 -1.5037 18 6 1.0979 6.6130 -1.2628 19 6 2.3286 7.2543 -1.2890 20 6 2.4033 8.6137 -1.0549 21 7 3.7152 9.2982 -1.0875 22 8 3.7827 10.4959 -0.8770 23 8 4.7274 8.6636 -1.3248 24 6 1.2548 9.3352 -0.7855 25 6 0.0269 8.7002 -0.7535 26 6 -0.0557 7.3403 -0.9917 27 9 -1.2552 6.7195 -0.9600 28 1 -1.0501 0.0000 0.0003 29 1 3.0099 -1.0199 -0.1189 30 1 3.0091 0.4083 0.9434 31 1 1.7024 -2.4441 -2.1138 32 1 4.0631 2.6479 -1.5705 33 1 3.4606 2.5090 0.0987 34 1 1.1273 2.5725 -0.7382 35 1 1.7298 2.7113 -2.4074 36 1 0.2151 4.8565 -1.8925 37 1 3.2270 6.6914 -1.4958 38 1 1.3171 10.3972 -0.5991 39 1 -0.8680 9.2665 -0.5423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281363011.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:53 Heat of formation + Delta-G solvation = 19.661123 kcal Electronic energy + Delta-G solvation = -27813.185223 eV Core-core repulsion = 23448.290660 eV Total energy + Delta-G solvation = -4364.894563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.111 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.38116 -43.34220 -41.84207 -39.88286 -38.04740 -37.73118 -36.27704 -33.98982 -33.37937 -32.76193 -32.02159 -30.57962 -27.96994 -27.61175 -26.38704 -24.77417 -23.59795 -22.74989 -21.56177 -20.68775 -19.87685 -19.34393 -19.16284 -18.69475 -18.55565 -18.16651 -17.95918 -17.42443 -16.96700 -16.73253 -16.63214 -15.68608 -15.44764 -15.40675 -15.02858 -14.75686 -14.72746 -14.52104 -14.20958 -13.78514 -13.29600 -13.18269 -13.09999 -13.03461 -12.76257 -12.70401 -12.43212 -12.34355 -12.20555 -12.13408 -12.10082 -11.78854 -11.13323 -10.88571 -10.66986 -10.56067 -10.24112 -9.70494 -8.95344 -7.81965 -5.31888 -1.43282 -0.39239 0.04630 0.24522 1.27027 1.48036 1.50830 1.57250 1.60015 1.99335 2.34422 2.54162 2.57557 2.62043 3.14097 3.30745 3.35728 3.45354 3.59972 3.77011 3.94430 4.10705 4.19443 4.25420 4.36221 4.41767 4.54466 4.65303 4.73624 4.85370 4.94327 4.98824 5.07097 5.25222 5.34631 5.40352 5.64093 5.71621 5.99780 6.30206 6.41103 6.78760 7.11110 7.37768 7.79829 8.22640 9.17632 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.015419 B = 0.002757 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.478439 B =10155.216857 C =11170.349034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.123 4.123 3 C 0.265 3.735 4 N -0.598 5.598 5 C -0.270 4.270 6 H 0.073 0.927 7 C -0.040 4.040 8 N -0.915 5.915 9 Si 0.964 3.036 10 H -0.288 1.288 11 H -0.298 1.298 12 H -0.274 1.274 13 C 0.166 3.834 14 C -0.142 4.142 15 C 0.528 3.472 16 O -0.543 6.543 17 N -0.662 5.662 18 C 0.113 3.887 19 C -0.065 4.065 20 C -0.050 4.050 21 N 0.031 4.969 22 O -0.129 6.129 23 O -0.218 6.218 24 C -0.031 4.031 25 C -0.106 4.106 26 C 0.131 3.869 27 F -0.114 7.114 28 H 0.222 0.778 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.247 0.753 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.433 0.567 37 H 0.159 0.841 38 H 0.195 0.805 39 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.773 20.892 2.674 23.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 C -0.126 4.126 3 C 0.140 3.860 4 N -0.318 5.318 5 C -0.399 4.399 6 H 0.091 0.909 7 C -0.236 4.236 8 N -0.560 5.560 9 Si 0.794 3.206 10 H -0.215 1.215 11 H -0.225 1.225 12 H -0.199 1.199 13 C 0.039 3.961 14 C -0.185 4.185 15 C 0.318 3.682 16 O -0.420 6.420 17 N -0.308 5.308 18 C 0.015 3.985 19 C -0.087 4.087 20 C -0.134 4.134 21 N 0.547 4.453 22 O -0.356 6.356 23 O -0.419 6.419 24 C -0.051 4.051 25 C -0.126 4.126 26 C 0.108 3.892 27 F -0.092 7.092 28 H 0.239 0.761 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.273 0.727 37 H 0.176 0.824 38 H 0.212 0.788 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -9.641 20.485 2.917 22.827 hybrid contribution -0.016 -1.285 -1.179 1.744 sum -9.658 19.200 1.738 21.562 Atomic orbital electron populations 1.24942 0.96198 1.05076 1.05319 1.24503 0.95796 0.96311 0.95966 1.17819 0.83319 0.96621 0.88268 1.44247 1.74887 1.01183 1.11494 1.19506 1.23172 1.00466 0.96772 0.90904 1.25608 0.97424 0.99839 1.00779 1.70172 1.27881 1.16555 1.41382 0.85319 0.77063 0.78494 0.79762 1.21483 1.22470 1.19902 1.20672 0.93736 0.82344 0.99365 1.22316 1.03813 0.87577 1.04775 1.21407 0.82108 0.89999 0.74649 1.90661 1.29493 1.76622 1.45209 1.43569 1.20677 1.03871 1.62712 1.17588 0.92489 0.84952 1.03453 1.21058 0.99730 0.92107 0.95796 1.21078 0.83412 0.93134 1.15735 1.43772 1.03408 1.00896 0.97207 1.94462 1.93389 0.97614 1.50099 1.94639 1.25803 1.66860 1.54624 1.21276 0.87908 1.03147 0.92777 1.21432 0.99987 0.90905 1.00235 1.17850 0.79399 0.92069 0.99871 1.91601 1.41682 1.82783 1.93134 0.76140 0.90386 0.92811 0.94273 0.93191 0.92783 0.88633 0.88666 0.72748 0.82390 0.78827 0.77315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -12.02 19.25 74.32 1.43 -10.59 16 2 C -0.12 -5.53 10.50 31.12 0.33 -5.20 16 3 C 0.26 12.15 5.44 84.57 0.46 12.61 16 4 N -0.60 -27.90 2.51 -712.56 -1.79 -29.68 16 5 C -0.27 -13.82 9.70 84.03 0.82 -13.01 16 6 H 0.07 3.69 7.84 -2.91 -0.02 3.67 16 7 C -0.04 -2.10 5.11 84.86 0.43 -1.67 16 8 N -0.91 -49.65 9.02 21.65 0.20 -49.46 16 9 Si 0.96 43.12 29.57 68.60 2.03 45.15 16 10 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 13 C 0.17 6.53 4.98 86.38 0.43 6.96 16 14 C -0.14 -4.67 5.88 29.85 0.18 -4.50 16 15 C 0.53 15.49 7.71 87.66 0.68 16.17 16 16 O -0.54 -19.13 13.06 -3.06 -0.04 -19.17 16 17 N -0.66 -14.49 5.28 -303.33 -1.60 -16.09 16 18 C 0.11 2.30 6.41 38.16 0.24 2.55 16 19 C -0.07 -1.60 8.26 22.38 0.18 -1.41 16 20 C -0.05 -1.04 6.85 36.36 0.25 -0.79 16 21 N 0.03 0.81 4.45 -46.49 -0.21 0.60 16 22 O -0.13 -3.12 18.44 18.89 0.35 -2.77 16 23 O -0.22 -7.07 18.44 18.89 0.35 -6.72 16 24 C -0.03 -0.35 9.55 22.29 0.21 -0.14 16 25 C -0.11 -0.83 10.02 22.29 0.22 -0.60 16 26 C 0.13 1.80 7.31 22.48 0.16 1.97 16 27 F -0.11 -1.55 16.87 44.97 0.76 -0.79 16 28 H 0.22 7.09 7.80 -4.41 -0.03 7.06 16 29 H 0.08 4.02 6.29 -2.39 -0.02 4.01 16 30 H 0.05 2.19 7.98 -2.39 -0.02 2.17 16 31 H 0.25 13.38 8.31 -92.70 -0.77 12.60 16 32 H 0.05 2.04 7.99 -2.39 -0.02 2.02 16 33 H 0.05 2.06 7.91 -2.39 -0.02 2.04 16 34 H 0.10 3.16 7.19 -2.39 -0.02 3.15 16 35 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 36 H 0.43 7.22 8.54 -92.70 -0.79 6.43 16 37 H 0.16 4.94 5.30 -2.91 -0.02 4.92 16 38 H 0.19 1.04 7.60 -2.91 -0.02 1.02 16 39 H 0.21 -0.16 8.06 -2.92 -0.02 -0.19 16 Total: -1.00 -67.01 354.88 6.40 -60.61 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.33 Total: 15.98 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 6.03 Total: 2.34 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -3.40 Total: -94.63 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: 0.66 Total: -28.66 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.76 Total: -0.79 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -67.01 6.40 -60.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281363011.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.267 kcal (2) G-P(sol) polarization free energy of solvation -67.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds