Wall clock time and date at job start Tue Mar 31 2020 18:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39876 * 126.03701 * 2 1 4 4 N 1.30836 * 108.19735 * 179.81631 * 3 2 1 5 5 N 1.40078 * 108.20741 * 0.43594 * 4 3 2 6 6 C 1.46501 * 126.03749 * 179.74094 * 5 4 3 7 7 C 1.34943 * 107.92750 * 359.72098 * 5 4 3 8 8 S 1.76197 * 126.13024 * 179.97438 * 7 5 4 9 9 O 1.42096 * 106.40612 * 203.56495 * 8 7 5 10 10 O 1.42104 * 106.40265 * 336.48542 * 8 7 5 11 11 N 1.65603 * 107.21747 * 90.02285 * 8 7 5 12 12 C 1.46496 * 120.00090 * 84.51089 * 11 8 7 13 13 C 1.50702 * 109.47545 * 94.99857 * 12 11 8 14 14 H 1.07996 * 119.99678 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99921 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99727 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00000 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47217 * 90.00281 * 17 15 13 19 19 H 1.48507 * 109.46871 * 209.99957 * 17 15 13 20 20 H 1.48498 * 109.47489 * 329.99735 * 17 15 13 21 21 C 1.39681 * 120.00104 * 264.50555 * 11 8 7 22 22 C 1.38909 * 120.07277 * 299.69439 * 21 11 8 23 23 C 1.38105 * 119.91950 * 179.77050 * 22 21 11 24 24 C 1.38283 * 120.07749 * 0.50202 * 23 22 21 25 25 C 1.38289 * 120.14818 * 359.74937 * 24 23 22 26 26 C 1.38097 * 120.07461 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.47366 * 269.69235 * 1 2 3 28 28 H 1.09004 * 109.47151 * 149.69462 * 1 2 3 29 29 H 1.09007 * 109.47251 * 29.70021 * 1 2 3 30 30 H 1.08000 * 125.89910 * 359.97438 * 3 2 1 31 31 H 1.09004 * 109.47179 * 269.97711 * 6 5 4 32 32 H 1.09003 * 109.47120 * 29.97231 * 6 5 4 33 33 H 1.09000 * 109.47147 * 149.97431 * 6 5 4 34 34 H 1.08999 * 109.47463 * 215.00086 * 12 11 8 35 35 H 1.09005 * 109.47055 * 334.99224 * 12 11 8 36 36 H 0.96996 * 119.99534 * 180.02562 * 16 15 13 37 37 H 1.08000 * 120.03895 * 359.97438 * 22 21 11 38 38 H 1.07999 * 119.96341 * 180.25044 * 23 22 21 39 39 H 1.08000 * 119.92669 * 179.72478 * 24 23 22 40 40 H 1.08005 * 119.96026 * 179.97438 * 25 24 23 41 41 H 1.08002 * 120.04194 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1311 0.0000 4 7 3.5753 0.7303 0.0040 5 7 3.5844 -0.6705 -0.0035 6 6 4.7746 -1.5247 -0.0075 7 6 2.3032 -1.0941 -0.0058 8 16 1.7636 -2.7714 -0.0154 9 8 0.4512 -2.7677 -0.5602 10 8 2.8306 -3.5330 -0.5638 11 7 1.6130 -3.2469 1.5637 12 6 0.3797 -2.9603 2.3006 13 6 -0.5371 -4.1543 2.2295 14 1 -0.2317 -5.0381 1.6891 15 6 -1.7660 -4.1180 2.8535 16 7 -2.5662 -5.1599 2.7910 17 14 -2.2944 -2.5891 3.7876 18 1 -3.0120 -1.6703 2.8678 19 1 -3.1956 -2.9769 4.9025 20 1 -1.0958 -1.9046 4.3353 21 6 2.6618 -3.9213 2.1931 22 6 3.1061 -5.1388 1.6930 23 6 4.1465 -5.8006 2.3150 24 6 4.7390 -5.2577 3.4404 25 6 4.2957 -4.0484 3.9438 26 6 3.2596 -3.3786 3.3235 27 1 -0.3634 -0.0055 1.0276 28 1 -0.3634 -0.8873 -0.5186 29 1 -0.3634 0.8927 -0.5092 30 1 1.9950 2.1579 -0.0004 31 1 5.0699 -1.7314 -1.0362 32 1 5.5886 -1.0161 0.5089 33 1 4.5507 -2.4621 0.5016 34 1 0.6198 -2.7482 3.3424 35 1 -0.1151 -2.0955 1.8585 36 1 -3.4309 -5.1342 3.2297 37 1 2.6406 -5.5656 0.8170 38 1 4.4951 -6.7452 1.9244 39 1 5.5495 -5.7795 3.9274 40 1 4.7604 -3.6274 4.8232 41 1 2.9135 -2.4344 3.7174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000285201009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:22 Heat of formation + Delta-G solvation = 49.032929 kcal Electronic energy + Delta-G solvation = -28111.036834 eV Core-core repulsion = 24313.629104 eV Total energy + Delta-G solvation = -3797.407730 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.26156 -39.20460 -37.13336 -35.68612 -35.56712 -33.67965 -32.56851 -31.80574 -30.68824 -29.71329 -28.17393 -27.26594 -25.36625 -22.93360 -22.36319 -22.06274 -21.34461 -20.83663 -18.77198 -17.79973 -17.27333 -16.88795 -16.44558 -15.82241 -15.53674 -15.36115 -14.76446 -14.60646 -14.17816 -14.04559 -13.76048 -13.52092 -13.36321 -13.17006 -12.82414 -12.70095 -12.59776 -12.37494 -12.28848 -12.06364 -11.90442 -11.73443 -11.58280 -11.42359 -11.17069 -10.90932 -10.82066 -10.72058 -10.52915 -10.45227 -9.78885 -9.70072 -9.02508 -8.68800 -8.65672 -8.49568 -7.98772 -6.15302 -4.15691 0.41620 1.28547 1.60221 1.66743 2.35843 2.54789 3.19378 3.24030 3.26051 3.31950 3.89690 4.00218 4.30895 4.39330 4.56627 5.05220 5.11308 5.14254 5.15508 5.17075 5.19043 5.30479 5.34709 5.45909 5.49144 5.57757 5.68754 5.82418 5.89196 6.02913 6.09593 6.27791 6.32464 6.50025 6.59314 6.64714 6.70818 6.72200 6.73674 6.89936 6.98407 7.41002 7.42480 7.47625 8.38481 8.88774 9.41853 10.97879 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.009414 B = 0.007183 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.643030 B = 3897.284169 C = 5613.316386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 C 0.027 3.973 4 N -0.262 5.262 5 N -0.310 5.310 6 C 0.088 3.912 7 C -0.496 4.496 8 S 2.697 3.303 9 O -0.911 6.911 10 O -0.955 6.955 11 N -0.926 5.926 12 C 0.224 3.776 13 C -0.531 4.531 14 H 0.081 0.919 15 C 0.079 3.921 16 N -0.889 5.889 17 Si 0.864 3.136 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.264 1.264 21 C 0.163 3.837 22 C -0.100 4.100 23 C -0.109 4.109 24 C -0.128 4.128 25 C -0.115 4.115 26 C -0.122 4.122 27 H 0.077 0.923 28 H 0.105 0.895 29 H 0.074 0.926 30 H 0.191 0.809 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.040 0.960 35 H 0.036 0.964 36 H 0.266 0.734 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.661 7.434 -1.408 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.128 4.128 3 C -0.157 4.157 4 N -0.087 5.087 5 N -0.095 5.095 6 C -0.053 4.053 7 C -0.702 4.702 8 S 2.783 3.217 9 O -0.900 6.900 10 O -0.945 6.945 11 N -0.758 5.758 12 C 0.103 3.897 13 C -0.570 4.570 14 H 0.099 0.901 15 C -0.125 4.125 16 N -0.527 5.527 17 Si 0.690 3.310 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.189 1.189 21 C 0.068 3.932 22 C -0.122 4.122 23 C -0.128 4.128 24 C -0.147 4.147 25 C -0.134 4.134 26 C -0.144 4.144 27 H 0.095 0.905 28 H 0.123 0.877 29 H 0.093 0.907 30 H 0.208 0.792 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.147 0.853 38 H 0.142 0.858 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 14.602 7.215 -2.124 16.425 hybrid contribution -1.122 1.267 0.943 1.937 sum 13.480 8.482 -1.181 15.970 Atomic orbital electron populations 1.20845 0.87898 1.05506 1.03805 1.20269 0.97635 0.90299 1.04595 1.23992 0.89665 0.99991 1.02057 1.77149 1.21709 0.89597 1.20199 1.48024 1.03873 1.04104 1.53521 1.22256 0.84801 0.93404 1.04795 1.33818 0.91757 1.25468 1.19182 1.02337 0.74037 0.72307 0.73026 1.93619 1.35839 1.85149 1.75382 1.93548 1.57043 1.67604 1.76341 1.55174 1.21842 1.67071 1.31742 1.19752 0.79542 0.97889 0.92523 1.21214 1.00351 1.00593 1.34825 0.90056 1.24789 0.96009 0.95988 0.95704 1.69874 1.09850 1.29414 1.43576 0.87046 0.79481 0.84052 0.80439 1.19403 1.20730 1.18889 1.17335 0.88945 0.91850 0.95061 1.21413 0.97354 0.92638 1.00752 1.20981 0.96136 0.99805 0.95885 1.21095 1.00551 0.96231 0.96816 1.20931 0.97091 0.95613 0.99759 1.21251 0.96292 1.00432 0.96408 0.90463 0.87661 0.90701 0.79189 0.89445 0.88741 0.88224 0.94258 0.94612 0.92362 0.85325 0.85788 0.86251 0.86118 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 9.71 36.01 0.35 -1.50 16 2 C -0.11 -1.82 6.09 -105.05 -0.64 -2.46 16 3 C 0.03 0.38 11.96 -17.36 -0.21 0.18 16 4 N -0.26 -4.04 12.57 30.63 0.39 -3.66 16 5 N -0.31 -4.88 4.01 -67.26 -0.27 -5.15 16 6 C 0.09 1.11 10.54 59.85 0.63 1.74 16 7 C -0.50 -8.50 7.00 -17.23 -0.12 -8.62 16 8 S 2.70 51.66 5.44 -107.50 -0.58 51.08 16 9 O -0.91 -19.91 14.43 -57.17 -0.83 -20.73 16 10 O -0.96 -17.86 13.41 -57.17 -0.77 -18.62 16 11 N -0.93 -18.45 2.83 -59.81 -0.17 -18.61 16 12 C 0.22 5.05 4.08 -5.20 -0.02 5.03 16 13 C -0.53 -14.46 9.92 -34.44 -0.34 -14.80 16 14 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 15 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 16 N -0.89 -26.42 13.96 55.43 0.77 -25.65 16 17 Si 0.86 20.11 27.47 -169.99 -4.67 15.44 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 21 C 0.16 2.94 5.24 -83.78 -0.44 2.50 16 22 C -0.10 -1.73 8.62 -39.38 -0.34 -2.07 16 23 C -0.11 -1.52 10.04 -39.61 -0.40 -1.92 16 24 C -0.13 -1.59 10.04 -39.55 -0.40 -1.99 16 25 C -0.12 -1.50 10.04 -39.61 -0.40 -1.90 16 26 C -0.12 -1.92 9.41 -39.38 -0.37 -2.29 16 27 H 0.08 1.13 7.69 -51.93 -0.40 0.73 16 28 H 0.10 1.81 5.55 -51.93 -0.29 1.52 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.19 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.10 1.30 6.68 -51.93 -0.35 0.95 16 34 H 0.04 0.86 6.62 -51.93 -0.34 0.51 16 35 H 0.04 0.78 6.39 -51.93 -0.33 0.45 16 36 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.13 2.29 7.54 -52.49 -0.40 1.90 16 38 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 39 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 41 H 0.12 1.82 7.94 -52.49 -0.42 1.40 16 LS Contribution 354.46 15.07 5.34 5.34 Total: -1.00 -33.11 354.46 -8.64 -41.76 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -5.07 Total: 4.82 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: -2.79 Total: -26.00 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.72 Total: -53.08 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -1.59 Total: -39.36 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -4.67 Total: 15.44 kcal Atomic # 16 Polarization: 51.66 SS G_CDS: -0.58 Total: 51.08 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.11 -8.64 -41.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285201009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.791 kcal (2) G-P(sol) polarization free energy of solvation -33.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds