Wall clock time and date at job start Tue Mar 31 2020 18:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39876 * 126.03701 * 2 1 4 4 N 1.30836 * 108.19735 * 179.81631 * 3 2 1 5 5 N 1.40078 * 108.20741 * 0.43594 * 4 3 2 6 6 C 1.46501 * 126.03749 * 179.74094 * 5 4 3 7 7 C 1.34943 * 107.92750 * 359.72098 * 5 4 3 8 8 S 1.76197 * 126.13024 * 179.97438 * 7 5 4 9 9 O 1.42096 * 106.40612 * 203.56495 * 8 7 5 10 10 O 1.42104 * 106.40265 * 336.48542 * 8 7 5 11 11 N 1.65603 * 107.21747 * 90.02285 * 8 7 5 12 12 C 1.46496 * 120.00090 * 84.51089 * 11 8 7 13 13 C 1.50702 * 109.47545 * 94.99857 * 12 11 8 14 14 H 1.07996 * 119.99678 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99921 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99727 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00000 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47217 * 90.00281 * 17 15 13 19 19 H 1.48507 * 109.46871 * 209.99957 * 17 15 13 20 20 H 1.48498 * 109.47489 * 329.99735 * 17 15 13 21 21 C 1.39681 * 120.00104 * 264.50555 * 11 8 7 22 22 C 1.38909 * 120.07277 * 299.69439 * 21 11 8 23 23 C 1.38105 * 119.91950 * 179.77050 * 22 21 11 24 24 C 1.38283 * 120.07749 * 0.50202 * 23 22 21 25 25 C 1.38289 * 120.14818 * 359.74937 * 24 23 22 26 26 C 1.38097 * 120.07461 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.47366 * 269.69235 * 1 2 3 28 28 H 1.09004 * 109.47151 * 149.69462 * 1 2 3 29 29 H 1.09007 * 109.47251 * 29.70021 * 1 2 3 30 30 H 1.08000 * 125.89910 * 359.97438 * 3 2 1 31 31 H 1.09004 * 109.47179 * 269.97711 * 6 5 4 32 32 H 1.09003 * 109.47120 * 29.97231 * 6 5 4 33 33 H 1.09000 * 109.47147 * 149.97431 * 6 5 4 34 34 H 1.08999 * 109.47463 * 215.00086 * 12 11 8 35 35 H 1.09005 * 109.47055 * 334.99224 * 12 11 8 36 36 H 0.96996 * 119.99534 * 180.02562 * 16 15 13 37 37 H 1.08000 * 120.03895 * 359.97438 * 22 21 11 38 38 H 1.07999 * 119.96341 * 180.25044 * 23 22 21 39 39 H 1.08000 * 119.92669 * 179.72478 * 24 23 22 40 40 H 1.08005 * 119.96026 * 179.97438 * 25 24 23 41 41 H 1.08002 * 120.04194 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1311 0.0000 4 7 3.5753 0.7303 0.0040 5 7 3.5844 -0.6705 -0.0035 6 6 4.7746 -1.5247 -0.0075 7 6 2.3032 -1.0941 -0.0058 8 16 1.7636 -2.7714 -0.0154 9 8 0.4512 -2.7677 -0.5602 10 8 2.8306 -3.5330 -0.5638 11 7 1.6130 -3.2469 1.5637 12 6 0.3797 -2.9603 2.3006 13 6 -0.5371 -4.1543 2.2295 14 1 -0.2317 -5.0381 1.6891 15 6 -1.7660 -4.1180 2.8535 16 7 -2.5662 -5.1599 2.7910 17 14 -2.2944 -2.5891 3.7876 18 1 -3.0120 -1.6703 2.8678 19 1 -3.1956 -2.9769 4.9025 20 1 -1.0958 -1.9046 4.3353 21 6 2.6618 -3.9213 2.1931 22 6 3.1061 -5.1388 1.6930 23 6 4.1465 -5.8006 2.3150 24 6 4.7390 -5.2577 3.4404 25 6 4.2957 -4.0484 3.9438 26 6 3.2596 -3.3786 3.3235 27 1 -0.3634 -0.0055 1.0276 28 1 -0.3634 -0.8873 -0.5186 29 1 -0.3634 0.8927 -0.5092 30 1 1.9950 2.1579 -0.0004 31 1 5.0699 -1.7314 -1.0362 32 1 5.5886 -1.0161 0.5089 33 1 4.5507 -2.4621 0.5016 34 1 0.6198 -2.7482 3.3424 35 1 -0.1151 -2.0955 1.8585 36 1 -3.4309 -5.1342 3.2297 37 1 2.6406 -5.5656 0.8170 38 1 4.4951 -6.7452 1.9244 39 1 5.5495 -5.7795 3.9274 40 1 4.7604 -3.6274 4.8232 41 1 2.9135 -2.4344 3.7174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285201009.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:21 Heat of formation + Delta-G solvation = 26.519281 kcal Electronic energy + Delta-G solvation = -28112.013099 eV Core-core repulsion = 24313.629104 eV Total energy + Delta-G solvation = -3798.383995 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.42517 -40.42729 -38.66804 -37.18804 -37.07742 -34.79963 -34.59630 -32.97803 -31.83566 -31.20590 -29.31838 -28.91948 -26.47065 -24.60308 -23.58174 -23.41834 -22.67515 -21.98441 -20.15333 -19.18389 -19.06633 -18.42280 -17.87734 -17.13997 -16.75410 -16.65704 -16.23455 -15.92118 -15.81509 -15.14678 -15.03877 -14.72070 -14.57791 -14.47458 -14.30451 -14.23126 -13.86610 -13.65337 -13.63034 -13.42756 -13.29433 -13.21017 -13.04874 -12.94016 -12.58274 -12.34140 -12.26826 -12.12432 -11.93881 -11.89579 -11.71313 -10.97449 -10.77869 -10.56415 -9.82392 -9.65861 -9.31451 -8.28596 -6.35071 -1.03260 0.02579 0.41210 0.51697 1.25785 1.36864 1.39959 1.42520 1.47950 1.83278 2.34698 2.45525 2.84098 3.02951 3.10018 3.40010 3.96343 3.96795 4.03334 4.12055 4.12593 4.21470 4.27842 4.32516 4.44433 4.52333 4.59487 4.61241 4.69367 4.78101 4.80953 4.92227 5.02010 5.15508 5.20833 5.39738 5.46662 5.52722 5.55325 5.62195 5.64404 5.74223 6.18165 6.27013 6.28625 6.66979 7.26702 8.88638 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.009414 B = 0.007183 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.643030 B = 3897.284169 C = 5613.316386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.120 4.120 3 C 0.037 3.963 4 N -0.268 5.268 5 N -0.315 5.315 6 C 0.078 3.922 7 C -0.512 4.512 8 S 2.704 3.296 9 O -0.951 6.951 10 O -0.962 6.962 11 N -0.931 5.931 12 C 0.233 3.767 13 C -0.538 4.538 14 H 0.031 0.969 15 C 0.015 3.985 16 N -0.943 5.943 17 Si 0.930 3.070 18 H -0.257 1.257 19 H -0.280 1.280 20 H -0.232 1.232 21 C 0.129 3.871 22 C -0.133 4.133 23 C -0.111 4.111 24 C -0.115 4.115 25 C -0.107 4.107 26 C -0.132 4.132 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.234 0.766 31 H 0.096 0.904 32 H 0.122 0.878 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.268 0.732 37 H 0.102 0.898 38 H 0.147 0.853 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.921 10.320 0.628 18.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.135 4.135 3 C -0.147 4.147 4 N -0.093 5.093 5 N -0.100 5.100 6 C -0.062 4.062 7 C -0.722 4.722 8 S 2.793 3.207 9 O -0.940 6.940 10 O -0.952 6.952 11 N -0.762 5.762 12 C 0.110 3.890 13 C -0.577 4.577 14 H 0.049 0.951 15 C -0.183 4.183 16 N -0.583 5.583 17 Si 0.752 3.248 18 H -0.181 1.181 19 H -0.205 1.205 20 H -0.155 1.155 21 C 0.035 3.965 22 C -0.154 4.154 23 C -0.129 4.129 24 C -0.134 4.134 25 C -0.125 4.125 26 C -0.153 4.153 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.129 0.871 30 H 0.250 0.750 31 H 0.115 0.885 32 H 0.141 0.859 33 H 0.109 0.891 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.121 0.879 38 H 0.165 0.835 39 H 0.179 0.821 40 H 0.176 0.824 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 16.901 10.053 -0.099 19.666 hybrid contribution -1.689 0.272 0.251 1.729 sum 15.212 10.326 0.152 18.386 Atomic orbital electron populations 1.20907 0.87554 1.05933 1.04140 1.20568 0.98152 0.90685 1.04071 1.24632 0.88552 1.01238 1.00288 1.77135 1.22564 0.89260 1.20328 1.48282 1.03790 1.04501 1.53416 1.22507 0.84727 0.93212 1.05766 1.33286 0.93201 1.24224 1.21453 1.01734 0.73260 0.72952 0.72717 1.93577 1.37881 1.86245 1.76324 1.93521 1.56702 1.68526 1.76449 1.54977 1.21719 1.67917 1.31608 1.19493 0.79975 0.95838 0.93680 1.21459 1.01623 1.00768 1.33823 0.95074 1.25806 0.95884 0.99793 0.96857 1.70052 1.10573 1.32311 1.45381 0.85976 0.80195 0.79653 0.79022 1.18102 1.20494 1.15512 1.17646 0.89544 0.92597 0.96701 1.21462 0.99344 0.93458 1.01115 1.21312 0.94981 1.00413 0.96221 1.21572 1.00494 0.95824 0.95491 1.21387 0.95645 0.95322 1.00139 1.21431 0.97151 1.01037 0.95705 0.90059 0.90487 0.87119 0.74987 0.88538 0.85942 0.89106 0.92795 0.93579 0.92250 0.87942 0.83496 0.82138 0.82412 0.85333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.66 9.71 71.24 0.69 -2.97 16 2 C -0.12 -3.64 6.09 -20.14 -0.12 -3.76 16 3 C 0.04 0.92 11.96 85.24 1.02 1.94 16 4 N -0.27 -7.58 12.57 -57.02 -0.72 -8.29 16 5 N -0.31 -9.48 4.01 -366.70 -1.47 -10.95 16 6 C 0.08 1.86 10.54 127.77 1.35 3.21 16 7 C -0.51 -17.37 7.00 83.54 0.58 -16.78 16 8 S 2.70 108.44 5.44 -56.49 -0.31 108.13 16 9 O -0.95 -44.29 14.43 -128.00 -1.85 -46.14 16 10 O -0.96 -38.08 13.41 -128.00 -1.72 -39.80 16 11 N -0.93 -38.39 2.83 -343.13 -0.97 -39.36 16 12 C 0.23 10.64 4.08 85.63 0.35 10.99 16 13 C -0.54 -30.76 9.92 25.60 0.25 -30.50 16 14 H 0.03 2.02 8.06 -2.91 -0.02 2.00 16 15 C 0.02 0.86 5.47 84.65 0.46 1.33 16 16 N -0.94 -58.65 13.96 21.45 0.30 -58.35 16 17 Si 0.93 41.19 27.47 68.60 1.88 43.07 16 18 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.23 -9.01 6.54 99.48 0.65 -8.36 16 21 C 0.13 4.75 5.24 38.21 0.20 4.95 16 22 C -0.13 -4.76 8.62 22.40 0.19 -4.57 16 23 C -0.11 -2.98 10.04 22.25 0.22 -2.76 16 24 C -0.12 -2.48 10.04 22.29 0.22 -2.26 16 25 C -0.11 -2.42 10.04 22.25 0.22 -2.19 16 26 C -0.13 -3.94 9.41 22.40 0.21 -3.73 16 27 H 0.08 2.24 7.69 -2.39 -0.02 2.22 16 28 H 0.08 2.70 5.55 -2.39 -0.01 2.68 16 29 H 0.11 2.28 8.14 -2.38 -0.02 2.27 16 30 H 0.23 3.48 8.06 -2.91 -0.02 3.45 16 31 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 32 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.09 2.35 6.68 -2.39 -0.02 2.33 16 34 H 0.05 2.30 6.62 -2.39 -0.02 2.28 16 35 H 0.05 2.01 6.39 -2.38 -0.02 2.00 16 36 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 37 H 0.10 4.06 7.54 -2.91 -0.02 4.04 16 38 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 39 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 41 H 0.13 3.58 7.94 -2.91 -0.02 3.56 16 Total: -1.00 -77.36 354.46 2.01 -75.35 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 1.00 Total: 23.46 kcal Atomic # 6 Polarization: -52.98 SS G_CDS: 5.86 Total: -47.12 kcal Atomic # 7 Polarization: -114.10 SS G_CDS: -2.86 Total: -116.96 kcal Atomic # 8 Polarization: -82.37 SS G_CDS: -3.56 Total: -85.94 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 1.88 Total: 43.07 kcal Atomic # 16 Polarization: 108.44 SS G_CDS: -0.31 Total: 108.13 kcal Total: -77.36 2.01 -75.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285201009.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.869 kcal (2) G-P(sol) polarization free energy of solvation -77.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds