Wall clock time and date at job start Tue Mar 31 2020 18:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50694 * 120.00264 * 2 1 4 4 N 1.46908 * 109.46963 * 124.11607 * 3 2 1 5 5 C 1.46896 * 110.99871 * 298.97741 * 4 3 2 6 6 C 1.50694 * 109.47428 * 288.27214 * 5 4 3 7 7 H 1.07997 * 120.00491 * 355.10416 * 6 5 4 8 8 C 1.37882 * 119.99750 * 175.10579 * 6 5 4 9 9 N 1.31520 * 119.99933 * 180.02562 * 8 6 5 10 10 Si 1.86793 * 120.00281 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.46986 * 89.99995 * 10 8 6 12 12 H 1.48503 * 109.47299 * 210.00232 * 10 8 6 13 13 H 1.48502 * 109.47077 * 330.00418 * 10 8 6 14 14 C 1.46898 * 110.99605 * 62.93636 * 4 3 2 15 15 C 1.53003 * 109.47261 * 66.04574 * 14 4 3 16 16 S 1.81402 * 109.46762 * 179.97438 * 15 14 4 17 17 O 1.42096 * 110.54450 * 68.37511 * 16 15 14 18 18 O 1.42105 * 110.54277 * 291.62126 * 16 15 14 19 19 C 1.76200 * 104.44704 * 180.02562 * 16 15 14 20 20 C 1.38359 * 119.45265 * 89.99939 * 19 16 15 21 21 C 1.38348 * 119.30884 * 180.02562 * 20 19 16 22 22 C 1.40071 * 118.28703 * 359.97438 * 21 20 19 23 23 C 1.43202 * 120.56574 * 180.02562 * 22 21 20 24 24 N 9.88498 * 130.60084 * 53.14478 * 3 1 2 25 25 C 1.39586 * 118.86678 * 0.02562 * 22 21 20 26 26 N 1.31692 * 120.55533 * 359.71944 * 25 22 21 27 27 H 1.07999 * 120.00195 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.99920 * 359.97438 * 1 2 3 29 29 H 1.08000 * 119.99920 * 180.02562 * 2 1 3 30 30 H 1.09008 * 109.47087 * 4.11998 * 3 2 1 31 31 H 1.08999 * 109.47635 * 244.11703 * 3 2 1 32 32 H 1.09006 * 109.47153 * 48.27623 * 5 4 3 33 33 H 1.09001 * 109.46728 * 168.26947 * 5 4 3 34 34 H 0.96992 * 120.00091 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.47220 * 306.04460 * 14 4 3 36 36 H 1.08997 * 109.46809 * 186.04596 * 14 4 3 37 37 H 1.09001 * 109.47096 * 59.99810 * 15 14 4 38 38 H 1.08997 * 109.47227 * 299.99766 * 15 14 4 39 39 H 1.07999 * 120.34736 * 359.97438 * 20 19 16 40 40 H 1.08002 * 120.85437 * 180.02562 * 21 20 19 41 41 H 1.08003 * 119.71996 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9811 1.3406 1.1467 5 6 2.2441 1.2454 2.4138 6 6 1.5049 2.5348 2.6631 7 1 1.6377 3.3716 1.9935 8 6 0.6591 2.6461 3.7463 9 7 0.0136 3.7712 3.9637 10 14 0.4288 1.1986 4.9043 11 1 1.4329 1.2733 5.9958 12 1 -0.9374 1.2414 5.4847 13 1 0.6079 -0.0697 4.1529 14 6 3.9923 0.2800 1.0448 15 6 4.8998 0.5541 -0.1562 16 16 6.1489 -0.7553 -0.2816 17 8 5.5436 -1.9889 -0.6433 18 8 7.0629 -0.6781 0.8038 19 6 7.1100 -0.3125 -1.6904 20 6 8.2208 0.4965 -1.5292 21 6 8.9730 0.8427 -2.6375 22 6 8.5752 0.3546 -3.8886 23 6 9.3185 0.6820 -5.0680 24 7 9.9066 0.9388 -6.0054 25 6 7.4418 -0.4565 -3.9662 26 7 6.7616 -0.7620 -2.8807 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3575 2.1323 0.0738 31 1 2.6337 1.3954 -0.9245 32 1 1.5311 0.4227 2.3586 33 1 2.9448 1.0648 3.2290 34 1 -0.5817 3.8495 4.7254 35 1 3.4975 -0.6825 0.9141 36 1 4.5910 0.2600 1.9554 37 1 5.3945 1.5165 -0.0256 38 1 4.3011 0.5740 -1.0669 39 1 8.4972 0.8547 -0.5486 40 1 9.8450 1.4725 -2.5403 41 1 7.1229 -0.8408 -4.9238 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292200903.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:12 Heat of formation + Delta-G solvation = 39.723079 kcal Electronic energy + Delta-G solvation = -25576.557660 eV Core-core repulsion = 21778.746225 eV Total energy + Delta-G solvation = -3797.811436 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.96205 -37.94406 -37.33545 -37.29728 -36.15793 -33.47207 -33.00151 -32.80641 -32.47415 -30.80309 -27.51564 -26.00229 -25.35410 -24.58024 -22.51010 -20.94013 -19.94695 -19.71102 -18.86819 -18.21509 -17.60320 -16.78162 -16.61332 -16.09509 -15.47633 -15.32888 -15.23531 -14.76225 -14.64464 -14.41987 -14.09573 -14.05925 -13.82087 -13.65805 -13.55154 -13.18794 -13.09550 -12.42857 -12.39745 -12.28460 -12.19371 -11.75797 -11.54609 -11.28713 -11.19050 -11.01577 -10.85637 -10.73491 -10.57334 -10.40834 -10.27206 -10.14045 -9.90489 -9.41828 -8.89903 -8.59686 -7.57182 -6.08812 -4.06278 -0.61702 -0.21042 0.41638 1.91454 2.08071 2.47379 2.71508 2.97384 2.99463 3.26480 3.34370 3.36216 3.45551 3.56575 3.90957 4.10321 4.25932 4.33949 4.39116 4.50100 4.74480 4.79503 4.84283 4.99445 5.13274 5.23273 5.35368 5.39772 5.56040 5.60029 5.72566 5.82881 5.91059 6.29198 6.48392 6.67214 6.73112 6.88853 6.89510 7.04575 7.18506 7.50775 7.73475 7.85911 8.58569 8.99587 9.52842 11.04118 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.019520 B = 0.002590 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.064205 B =10807.874219 C =10928.705640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.195 4.195 3 C 0.083 3.917 4 N -0.508 5.508 5 C 0.154 3.846 6 C -0.505 4.505 7 H 0.081 0.919 8 C 0.070 3.930 9 N -0.900 5.900 10 Si 0.869 3.131 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.265 1.265 14 C 0.055 3.945 15 C -0.588 4.588 16 S 2.494 3.506 17 O -0.910 6.910 18 O -0.924 6.924 19 C -0.403 4.403 20 C -0.085 4.085 21 C -0.039 4.039 22 C -0.031 4.031 23 C 0.250 3.750 24 N -0.388 5.388 25 C 0.133 3.867 26 N -0.387 5.387 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.005 0.995 33 H 0.024 0.976 34 H 0.264 0.736 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.148 0.852 38 H 0.141 0.859 39 H 0.171 0.829 40 H 0.159 0.841 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.184 -7.697 -13.656 21.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.214 4.214 3 C -0.045 4.045 4 N -0.231 5.231 5 C 0.028 3.972 6 C -0.544 4.544 7 H 0.099 0.901 8 C -0.131 4.131 9 N -0.539 5.539 10 Si 0.696 3.304 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.190 1.190 14 C -0.075 4.075 15 C -0.720 4.720 16 S 2.669 3.331 17 O -0.907 6.907 18 O -0.921 6.921 19 C -0.620 4.620 20 C -0.106 4.106 21 C -0.068 4.068 22 C -0.036 4.036 23 C -0.067 4.067 24 N -0.063 5.063 25 C -0.031 4.031 26 N -0.095 5.095 27 H 0.106 0.894 28 H 0.120 0.880 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.023 0.977 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.166 0.834 38 H 0.159 0.841 39 H 0.188 0.812 40 H 0.176 0.824 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 15.665 -8.007 -14.544 22.826 hybrid contribution -0.002 -0.377 0.452 0.588 sum 15.663 -8.384 -14.092 22.676 Atomic orbital electron populations 1.23826 0.96069 1.01554 0.99699 1.23619 0.96978 0.99856 1.00982 1.21385 0.94861 0.95049 0.93191 1.62320 1.14628 1.42060 1.04095 1.20339 0.92878 0.98189 0.85822 1.20931 1.24081 0.97825 1.11533 0.90116 1.24865 0.95371 0.95529 0.97384 1.69882 1.29140 1.25297 1.29540 0.86948 0.77766 0.83893 0.81748 1.20116 1.21200 1.19018 1.21820 0.95075 0.95766 0.94867 1.30301 1.14612 1.17852 1.09255 1.06171 0.76300 0.77341 0.73298 1.93600 1.76932 1.38200 1.81999 1.93621 1.62244 1.86973 1.49227 1.33837 1.09563 1.04918 1.13724 1.22095 0.93050 0.94071 1.01376 1.21838 0.98907 0.95893 0.90211 1.17274 0.96251 1.01052 0.89022 1.25292 0.93974 0.94512 0.92961 1.81327 1.08006 1.07049 1.09902 1.23327 0.89282 0.92102 0.98405 1.67936 1.28169 1.16440 0.96993 0.89426 0.88026 0.88111 0.88699 0.91530 0.97718 0.95776 0.92646 0.93397 0.89380 0.83413 0.84106 0.81195 0.82386 0.80399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 14.32 29.01 0.42 -2.35 16 2 C -0.19 -3.14 7.45 -36.03 -0.27 -3.41 16 3 C 0.08 1.39 5.46 -4.97 -0.03 1.36 16 4 N -0.51 -9.37 4.66 -237.51 -1.11 -10.47 16 5 C 0.15 3.45 3.68 -4.98 -0.02 3.44 16 6 C -0.51 -13.52 9.06 -34.44 -0.31 -13.83 16 7 H 0.08 2.35 7.89 -52.49 -0.41 1.94 16 8 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 9 N -0.90 -26.64 13.96 55.43 0.77 -25.86 16 10 Si 0.87 20.79 27.57 -169.99 -4.69 16.10 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 13 H -0.27 -6.11 6.40 56.52 0.36 -5.75 16 14 C 0.06 0.80 4.79 -3.82 -0.02 0.78 16 15 C -0.59 -6.05 5.91 37.16 0.22 -5.83 16 16 S 2.49 26.49 5.22 -107.50 -0.56 25.93 16 17 O -0.91 -12.67 17.72 -57.54 -1.02 -13.69 16 18 O -0.92 -11.38 17.08 -57.54 -0.98 -12.36 16 19 C -0.40 -3.56 6.53 -17.47 -0.11 -3.67 16 20 C -0.09 -0.54 9.49 -39.50 -0.37 -0.92 16 21 C -0.04 -0.19 9.91 -38.85 -0.38 -0.58 16 22 C -0.03 -0.18 5.75 -106.78 -0.61 -0.79 16 23 C 0.25 1.75 15.37 -22.47 -0.35 1.40 16 24 N -0.39 -3.66 18.54 41.84 0.78 -2.89 16 25 C 0.13 0.88 10.92 -17.11 -0.19 0.69 16 26 N -0.39 -3.60 10.02 -12.09 -0.12 -3.72 16 27 H 0.09 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.10 1.68 7.84 -52.49 -0.41 1.27 16 29 H 0.10 1.51 6.76 -52.49 -0.35 1.15 16 30 H 0.09 1.81 6.99 -51.92 -0.36 1.45 16 31 H 0.07 0.91 6.34 -51.93 -0.33 0.58 16 32 H 0.01 0.12 5.47 -51.93 -0.28 -0.17 16 33 H 0.02 0.54 7.49 -51.93 -0.39 0.15 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.05 0.68 6.28 -51.93 -0.33 0.35 16 36 H 0.09 1.22 7.86 -51.93 -0.41 0.81 16 37 H 0.15 1.21 8.14 -51.92 -0.42 0.79 16 38 H 0.14 1.26 6.49 -51.93 -0.34 0.92 16 39 H 0.17 0.74 7.55 -52.49 -0.40 0.35 16 40 H 0.16 0.32 8.06 -52.49 -0.42 -0.10 16 41 H 0.18 0.69 8.06 -52.48 -0.42 0.27 16 LS Contribution 367.09 15.07 5.53 5.53 Total: -1.00 -35.57 367.09 -8.40 -43.98 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -4.88 Total: -0.69 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -2.13 Total: -21.84 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: 0.32 Total: -42.95 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -2.00 Total: -26.06 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.69 Total: 16.10 kcal Atomic # 16 Polarization: 26.49 SS G_CDS: -0.56 Total: 25.93 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.57 -8.40 -43.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292200903.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.700 kcal (2) G-P(sol) polarization free energy of solvation -35.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds