Wall clock time and date at job start Tue Mar 31 2020 18:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50694 * 120.00264 * 2 1 4 4 N 1.46908 * 109.46963 * 124.11607 * 3 2 1 5 5 C 1.46896 * 110.99871 * 298.97741 * 4 3 2 6 6 C 1.50694 * 109.47428 * 288.27214 * 5 4 3 7 7 H 1.07997 * 120.00491 * 355.10416 * 6 5 4 8 8 C 1.37882 * 119.99750 * 175.10579 * 6 5 4 9 9 N 1.31520 * 119.99933 * 180.02562 * 8 6 5 10 10 Si 1.86793 * 120.00281 * 359.97438 * 8 6 5 11 11 H 1.48497 * 109.46986 * 89.99995 * 10 8 6 12 12 H 1.48503 * 109.47299 * 210.00232 * 10 8 6 13 13 H 1.48502 * 109.47077 * 330.00418 * 10 8 6 14 14 C 1.46898 * 110.99605 * 62.93636 * 4 3 2 15 15 C 1.53003 * 109.47261 * 66.04574 * 14 4 3 16 16 S 1.81402 * 109.46762 * 179.97438 * 15 14 4 17 17 O 1.42096 * 110.54450 * 68.37511 * 16 15 14 18 18 O 1.42105 * 110.54277 * 291.62126 * 16 15 14 19 19 C 1.76200 * 104.44704 * 180.02562 * 16 15 14 20 20 C 1.38359 * 119.45265 * 89.99939 * 19 16 15 21 21 C 1.38348 * 119.30884 * 180.02562 * 20 19 16 22 22 C 1.40071 * 118.28703 * 359.97438 * 21 20 19 23 23 C 1.43202 * 120.56574 * 180.02562 * 22 21 20 24 24 N 9.88498 * 130.60084 * 53.14478 * 3 1 2 25 25 C 1.39586 * 118.86678 * 0.02562 * 22 21 20 26 26 N 1.31692 * 120.55533 * 359.71944 * 25 22 21 27 27 H 1.07999 * 120.00195 * 179.97438 * 1 2 3 28 28 H 1.08000 * 119.99920 * 359.97438 * 1 2 3 29 29 H 1.08000 * 119.99920 * 180.02562 * 2 1 3 30 30 H 1.09008 * 109.47087 * 4.11998 * 3 2 1 31 31 H 1.08999 * 109.47635 * 244.11703 * 3 2 1 32 32 H 1.09006 * 109.47153 * 48.27623 * 5 4 3 33 33 H 1.09001 * 109.46728 * 168.26947 * 5 4 3 34 34 H 0.96992 * 120.00091 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.47220 * 306.04460 * 14 4 3 36 36 H 1.08997 * 109.46809 * 186.04596 * 14 4 3 37 37 H 1.09001 * 109.47096 * 59.99810 * 15 14 4 38 38 H 1.08997 * 109.47227 * 299.99766 * 15 14 4 39 39 H 1.07999 * 120.34736 * 359.97438 * 20 19 16 40 40 H 1.08002 * 120.85437 * 180.02562 * 21 20 19 41 41 H 1.08003 * 119.71996 * 180.02562 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9811 1.3406 1.1467 5 6 2.2441 1.2454 2.4138 6 6 1.5049 2.5348 2.6631 7 1 1.6377 3.3716 1.9935 8 6 0.6591 2.6461 3.7463 9 7 0.0136 3.7712 3.9637 10 14 0.4288 1.1986 4.9043 11 1 1.4329 1.2733 5.9958 12 1 -0.9374 1.2414 5.4847 13 1 0.6079 -0.0697 4.1529 14 6 3.9923 0.2800 1.0448 15 6 4.8998 0.5541 -0.1562 16 16 6.1489 -0.7553 -0.2816 17 8 5.5436 -1.9889 -0.6433 18 8 7.0629 -0.6781 0.8038 19 6 7.1100 -0.3125 -1.6904 20 6 8.2208 0.4965 -1.5292 21 6 8.9730 0.8427 -2.6375 22 6 8.5752 0.3546 -3.8886 23 6 9.3185 0.6820 -5.0680 24 7 9.9066 0.9388 -6.0054 25 6 7.4418 -0.4565 -3.9662 26 7 6.7616 -0.7620 -2.8807 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3575 2.1323 0.0738 31 1 2.6337 1.3954 -0.9245 32 1 1.5311 0.4227 2.3586 33 1 2.9448 1.0648 3.2290 34 1 -0.5817 3.8495 4.7254 35 1 3.4975 -0.6825 0.9141 36 1 4.5910 0.2600 1.9554 37 1 5.3945 1.5165 -0.0256 38 1 4.3011 0.5740 -1.0669 39 1 8.4972 0.8547 -0.5486 40 1 9.8450 1.4725 -2.5403 41 1 7.1229 -0.8408 -4.9238 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292200903.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:11 Heat of formation + Delta-G solvation = 12.416317 kcal Electronic energy + Delta-G solvation = -25577.741770 eV Core-core repulsion = 21778.746225 eV Total energy + Delta-G solvation = -3798.995546 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.48506 -39.32511 -38.22912 -37.92118 -37.07155 -34.80717 -34.20223 -33.98937 -33.00827 -32.23620 -29.19883 -26.95605 -26.36330 -25.07207 -23.97535 -22.44902 -20.65806 -20.35789 -20.08508 -19.03604 -18.78980 -18.17443 -17.59312 -17.12431 -16.51860 -16.14442 -16.07444 -15.94013 -15.68014 -15.50226 -15.30838 -14.95868 -14.51043 -14.47153 -14.41879 -14.25799 -14.24519 -13.75642 -13.67758 -13.22294 -13.19528 -13.11470 -12.68113 -12.58966 -12.44205 -12.32514 -12.23441 -12.07185 -11.83508 -11.67123 -11.41309 -11.21231 -10.85316 -10.72486 -10.68135 -10.20600 -9.02963 -8.22615 -6.23935 -1.24482 -0.94017 -0.02800 1.36426 1.37904 1.39363 1.43449 1.48793 1.51063 1.73002 2.38342 2.41921 2.44763 2.77917 2.85405 3.12088 3.31990 3.48394 3.52363 3.61845 3.74476 3.84283 3.98009 4.08812 4.26910 4.37523 4.46944 4.51753 4.56694 4.66065 4.75113 4.86457 4.97988 5.01883 5.04622 5.16573 5.25904 5.60345 5.74997 5.82870 6.07483 6.13474 6.33653 6.36282 6.63990 6.82522 7.39077 8.93753 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.019520 B = 0.002590 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.064205 B =10807.874219 C =10928.705640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.199 4.199 3 C 0.081 3.919 4 N -0.519 5.519 5 C 0.160 3.840 6 C -0.502 4.502 7 H 0.041 0.959 8 C 0.011 3.989 9 N -0.949 5.949 10 Si 0.933 3.067 11 H -0.266 1.266 12 H -0.287 1.287 13 H -0.249 1.249 14 C 0.043 3.957 15 C -0.582 4.582 16 S 2.514 3.486 17 O -0.949 6.949 18 O -0.945 6.945 19 C -0.414 4.414 20 C -0.084 4.084 21 C -0.025 4.025 22 C -0.026 4.026 23 C 0.278 3.722 24 N -0.431 5.431 25 C 0.133 3.867 26 N -0.417 5.417 27 H 0.109 0.891 28 H 0.086 0.914 29 H 0.118 0.882 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.004 0.996 33 H 0.029 0.971 34 H 0.264 0.736 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.171 0.829 38 H 0.156 0.844 39 H 0.191 0.809 40 H 0.192 0.808 41 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.014 -8.976 -14.249 23.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.219 4.219 3 C -0.046 4.046 4 N -0.242 5.242 5 C 0.033 3.967 6 C -0.540 4.540 7 H 0.060 0.940 8 C -0.186 4.186 9 N -0.590 5.590 10 Si 0.757 3.243 11 H -0.191 1.191 12 H -0.213 1.213 13 H -0.172 1.172 14 C -0.087 4.087 15 C -0.714 4.714 16 S 2.693 3.307 17 O -0.946 6.946 18 O -0.942 6.942 19 C -0.634 4.634 20 C -0.105 4.105 21 C -0.054 4.054 22 C -0.032 4.032 23 C -0.038 4.038 24 N -0.106 5.106 25 C -0.032 4.032 26 N -0.126 5.126 27 H 0.127 0.873 28 H 0.104 0.896 29 H 0.136 0.864 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.021 0.979 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.111 0.889 37 H 0.189 0.811 38 H 0.174 0.826 39 H 0.208 0.792 40 H 0.210 0.790 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 17.492 -9.312 -15.118 24.925 hybrid contribution -0.490 0.106 0.499 0.707 sum 17.002 -9.206 -14.619 24.239 Atomic orbital electron populations 1.23953 0.96302 1.01904 0.99585 1.23710 0.97089 1.00037 1.01056 1.21383 0.94752 0.94393 0.94072 1.62159 1.14977 1.44306 1.02775 1.20100 0.92898 0.95463 0.88259 1.21168 1.23986 0.98552 1.10318 0.94047 1.25718 0.95291 0.98225 0.99367 1.70036 1.30571 1.27757 1.30622 0.85917 0.77692 0.80949 0.79699 1.19127 1.21263 1.17227 1.21960 0.94705 0.94817 0.97168 1.30235 1.14209 1.18965 1.07991 1.05218 0.75807 0.76468 0.73201 1.93549 1.77822 1.40473 1.82793 1.93588 1.62653 1.87174 1.50759 1.33250 1.10510 1.06673 1.12937 1.22380 0.92121 0.93135 1.02819 1.22225 0.99149 0.94955 0.89042 1.17266 0.95904 1.01018 0.88999 1.25248 0.92933 0.93216 0.92409 1.81371 1.09486 1.08582 1.11132 1.23668 0.89163 0.91793 0.98548 1.67885 1.29504 1.17597 0.97614 0.87297 0.89578 0.86390 0.92023 0.88104 0.97852 0.95278 0.92665 0.92849 0.88943 0.81114 0.82574 0.79210 0.79038 0.78296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.58 14.32 67.78 0.97 -4.61 16 2 C -0.20 -6.17 7.45 25.65 0.19 -5.98 16 3 C 0.08 2.68 5.46 85.55 0.47 3.15 16 4 N -0.52 -18.65 4.66 -905.36 -4.22 -22.87 16 5 C 0.16 7.09 3.68 85.56 0.32 7.41 16 6 C -0.50 -27.44 9.06 25.60 0.23 -27.21 16 7 H 0.04 2.53 7.89 -2.91 -0.02 2.50 16 8 C 0.01 0.63 5.47 84.66 0.46 1.09 16 9 N -0.95 -57.84 13.96 21.45 0.30 -57.54 16 10 Si 0.93 42.79 27.57 68.60 1.89 44.68 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 13 H -0.25 -10.62 6.40 99.48 0.64 -9.98 16 14 C 0.04 1.17 4.79 86.30 0.41 1.59 16 15 C -0.58 -10.61 5.91 71.98 0.43 -10.19 16 16 S 2.51 49.16 5.22 -56.49 -0.29 48.86 16 17 O -0.95 -25.54 17.72 -127.65 -2.26 -27.80 16 18 O -0.95 -21.71 17.08 -127.65 -2.18 -23.89 16 19 C -0.41 -6.37 6.53 84.71 0.55 -5.82 16 20 C -0.08 -0.79 9.49 22.32 0.21 -0.58 16 21 C -0.02 -0.15 9.91 22.74 0.23 0.07 16 22 C -0.03 -0.23 5.75 -21.26 -0.12 -0.35 16 23 C 0.28 3.23 15.37 88.33 1.36 4.59 16 24 N -0.43 -7.43 18.54 19.00 0.35 -7.08 16 25 C 0.13 1.44 10.92 85.04 0.93 2.36 16 26 N -0.42 -6.91 10.02 -192.18 -1.93 -8.83 16 27 H 0.11 2.88 8.06 -2.91 -0.02 2.86 16 28 H 0.09 2.92 7.84 -2.91 -0.02 2.89 16 29 H 0.12 3.26 6.76 -2.91 -0.02 3.24 16 30 H 0.06 2.43 6.99 -2.38 -0.02 2.41 16 31 H 0.10 2.57 6.34 -2.39 -0.02 2.55 16 32 H 0.00 0.17 5.47 -2.38 -0.01 0.15 16 33 H 0.03 1.27 7.49 -2.39 -0.02 1.25 16 34 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.05 1.40 6.28 -2.39 -0.01 1.38 16 36 H 0.09 2.41 7.86 -2.39 -0.02 2.39 16 37 H 0.17 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.16 2.36 6.49 -2.39 -0.02 2.35 16 39 H 0.19 0.98 7.55 -2.91 -0.02 0.96 16 40 H 0.19 -0.14 8.06 -2.91 -0.02 -0.16 16 41 H 0.20 1.07 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -79.13 367.09 -0.71 -79.84 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.99 Total: 9.09 kcal Atomic # 6 Polarization: -41.11 SS G_CDS: 6.63 Total: -34.47 kcal Atomic # 7 Polarization: -90.82 SS G_CDS: -5.49 Total: -96.32 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -4.44 Total: -51.69 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.89 Total: 44.68 kcal Atomic # 16 Polarization: 49.16 SS G_CDS: -0.29 Total: 48.86 kcal Total: -79.13 -0.71 -79.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292200903.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.261 kcal (2) G-P(sol) polarization free energy of solvation -79.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds