Wall clock time and date at job start Tue Mar 31 2020 18:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35948 * 116.99577 * 2 1 4 4 C 1.38740 * 119.98659 * 180.02562 * 3 2 1 5 5 C 1.38081 * 120.00729 * 180.26008 * 4 3 2 6 6 C 1.38808 * 119.99169 * 359.48740 * 5 4 3 7 7 N 1.40389 * 120.00963 * 180.25648 * 6 5 4 8 8 C 1.36936 * 127.17153 * 295.22993 * 7 6 5 9 9 C 1.50708 * 126.35587 * 359.97053 * 8 7 6 10 10 N 1.30323 * 107.29803 * 179.97438 * 8 7 6 11 11 N 1.28518 * 110.13313 * 0.02562 * 10 8 7 12 12 C 1.31303 * 109.90801 * 359.76030 * 11 10 8 13 13 S 1.76203 * 126.49814 * 180.25918 * 12 11 10 14 14 C 1.80997 * 99.99777 * 0.13600 * 13 12 11 15 15 C 1.53005 * 109.47052 * 180.02562 * 14 13 12 16 16 H 1.09000 * 109.47134 * 59.99810 * 15 14 13 17 17 O 1.42905 * 109.46672 * 299.99839 * 15 14 13 18 18 C 1.50700 * 109.47214 * 180.02562 * 15 14 13 19 19 H 1.08004 * 119.99869 * 359.97438 * 18 15 14 20 20 C 1.37877 * 119.99841 * 180.02562 * 18 15 14 21 21 N 1.31509 * 120.00272 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99852 * 179.97438 * 20 18 15 23 23 H 1.48498 * 109.47392 * 89.99658 * 22 20 18 24 24 H 1.48499 * 109.47250 * 209.99556 * 22 20 18 25 25 H 1.48502 * 109.47135 * 329.99703 * 22 20 18 26 26 C 1.38803 * 119.97887 * 0.48824 * 6 5 4 27 27 C 1.38085 * 119.99438 * 359.77036 * 26 6 5 28 28 H 1.09000 * 109.46926 * 299.99983 * 1 2 3 29 29 H 1.09004 * 109.47064 * 59.99859 * 1 2 3 30 30 H 1.08998 * 109.46709 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.99317 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.00669 * 179.74783 * 5 4 3 33 33 H 1.08995 * 109.47258 * 89.99269 * 9 8 7 34 34 H 1.08994 * 109.46751 * 210.00109 * 9 8 7 35 35 H 1.09000 * 109.46465 * 329.99636 * 9 8 7 36 36 H 1.08999 * 109.47742 * 299.99732 * 14 13 12 37 37 H 1.09000 * 109.47306 * 60.00008 * 14 13 12 38 38 H 0.96691 * 114.00431 * 299.99677 * 17 15 14 39 39 H 0.97002 * 120.00275 * 180.02562 * 21 20 18 40 40 H 1.08001 * 119.99963 * 179.74751 * 26 6 5 41 41 H 1.08002 * 119.99388 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 3.4317 1.2837 -0.0005 5 6 4.0589 2.5139 0.0049 6 6 3.3031 3.6781 0.0001 7 7 3.9405 4.9290 0.0002 8 6 4.7270 5.4568 0.9892 9 6 5.0767 4.7989 2.2992 10 7 5.1170 6.6336 0.5875 11 7 4.6356 6.8855 -0.5772 12 6 3.9092 5.8724 -0.9894 13 16 3.0540 5.7522 -2.5253 14 6 3.4915 7.3500 -3.2545 15 6 2.8419 7.4760 -4.6340 16 1 1.7588 7.4070 -4.5333 17 8 3.3099 6.4227 -5.4788 18 6 3.2067 8.8061 -5.2414 19 1 3.8383 9.4930 -4.6977 20 6 2.7332 9.1464 -6.4908 21 7 1.9637 8.3102 -7.1527 22 14 3.1848 10.7954 -7.2434 23 1 4.4368 10.6546 -8.0293 24 1 2.0883 11.2489 -8.1363 25 1 3.3882 11.7936 -6.1629 26 6 1.9170 3.6052 0.0002 27 6 1.2905 2.3747 0.0001 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0197 0.3778 -0.0005 32 1 5.1374 2.5702 0.0086 33 1 5.9907 4.2170 2.1810 34 1 5.2287 5.5638 3.0606 35 1 4.2633 4.1401 2.6033 36 1 3.1343 8.1534 -2.6104 37 1 4.5747 7.4192 -3.3548 38 1 4.2674 6.4223 -5.6134 39 1 1.6308 8.5495 -8.0318 40 1 1.3286 4.5109 0.0006 41 1 0.2120 2.3180 0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294890992.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:41 Heat of formation + Delta-G solvation = 19.071252 kcal Electronic energy + Delta-G solvation = -25579.676304 eV Core-core repulsion = 21780.969338 eV Total energy + Delta-G solvation = -3798.706966 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.90859 -40.50852 -38.11843 -35.95353 -34.47865 -32.44249 -32.19926 -31.57768 -29.80511 -29.61175 -27.88538 -27.46348 -25.33351 -23.81329 -23.10197 -22.23249 -21.23464 -20.61100 -18.73228 -18.21526 -17.22359 -16.98037 -16.45610 -16.15241 -15.77977 -15.04803 -14.66294 -14.52391 -14.37856 -14.20920 -14.11902 -13.90677 -13.71512 -13.46067 -13.19281 -13.13648 -12.84245 -12.45152 -12.35966 -11.74278 -11.60128 -11.50168 -11.42414 -11.22270 -10.94046 -10.90863 -10.60961 -10.45170 -10.18597 -9.86297 -9.63676 -9.50483 -9.19934 -8.65207 -8.57880 -8.34383 -7.22746 -6.08377 -4.27667 0.69894 0.85796 1.44726 1.72773 2.53697 2.78858 2.84633 2.89872 3.19069 3.26764 3.33687 3.37953 4.28440 4.33437 4.35970 4.39326 4.65303 4.75319 4.77127 4.78688 4.96558 5.07631 5.10443 5.19139 5.23806 5.37725 5.49243 5.52474 5.57579 5.73469 5.82899 5.86462 5.95656 6.04369 6.06794 6.14293 6.18906 6.68954 6.82037 6.99864 7.51913 7.76248 8.01918 8.73791 8.74639 9.25976 9.48333 10.95787 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013722 B = 0.003001 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.962246 B = 9329.388008 C =10967.405841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.313 6.313 3 C 0.142 3.858 4 C -0.139 4.139 5 C -0.060 4.060 6 C 0.075 3.925 7 N -0.423 5.423 8 C 0.174 3.826 9 C -0.061 4.061 10 N -0.284 5.284 11 N -0.293 5.293 12 C 0.172 3.828 13 S 0.000 6.000 14 C -0.115 4.115 15 C 0.245 3.755 16 H 0.066 0.934 17 O -0.560 6.560 18 C -0.568 4.568 19 H 0.062 0.938 20 C 0.081 3.919 21 N -0.858 5.858 22 Si 0.895 3.105 23 H -0.278 1.278 24 H -0.285 1.285 25 H -0.272 1.272 26 C -0.053 4.053 27 C -0.193 4.193 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.102 0.898 31 H 0.142 0.858 32 H 0.137 0.863 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.349 0.651 39 H 0.262 0.738 40 H 0.136 0.864 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.145 -17.551 18.322 25.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.226 6.226 3 C 0.096 3.904 4 C -0.158 4.158 5 C -0.080 4.080 6 C -0.016 4.016 7 N -0.115 5.115 8 C -0.095 4.095 9 C -0.121 4.121 10 N -0.124 5.124 11 N -0.136 5.136 12 C -0.201 4.201 13 S 0.231 5.769 14 C -0.264 4.264 15 C 0.185 3.815 16 H 0.084 0.916 17 O -0.362 6.362 18 C -0.607 4.607 19 H 0.080 0.920 20 C -0.126 4.126 21 N -0.493 5.493 22 Si 0.722 3.278 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.196 1.196 26 C -0.072 4.072 27 C -0.213 4.213 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.160 0.840 32 H 0.155 0.845 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.194 0.806 39 H 0.072 0.928 40 H 0.154 0.846 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.797 -17.418 17.732 24.921 hybrid contribution 0.690 1.118 0.063 1.315 sum -1.107 -16.300 17.795 24.158 Atomic orbital electron populations 1.23154 0.77803 1.04353 1.01822 1.86102 1.21887 1.26467 1.88166 1.19124 0.92345 0.84374 0.94517 1.20276 0.91419 0.98065 1.06069 1.20919 1.00261 0.90084 0.96694 1.17425 0.91471 0.82698 1.09976 1.43772 1.39475 1.13809 1.14438 1.25140 0.96595 0.93315 0.94409 1.20169 1.02322 1.00534 0.89030 1.73934 1.20505 1.11716 1.06206 1.74759 1.12334 1.20726 1.05798 1.27628 1.04844 0.89163 0.98458 1.86035 1.59489 1.29112 1.02287 1.24935 1.05576 0.92678 1.03239 1.19249 0.94673 0.87290 0.80281 0.91587 1.86579 1.25313 1.52999 1.71353 1.21500 1.34064 1.02154 1.03019 0.92025 1.25027 0.93936 0.96810 0.96828 1.70074 1.31556 1.34896 1.12746 0.86566 0.78223 0.83790 0.79224 1.20390 1.21039 1.19639 1.20978 0.92483 0.98540 0.95244 1.21143 1.00680 0.91224 1.08203 0.92375 0.92063 0.87925 0.83984 0.84523 0.89772 0.88746 0.90534 0.89051 0.89567 0.80633 0.92778 0.84615 0.84205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.68 10.50 -19.58 -0.21 -2.88 16 3 C 0.14 1.32 6.69 -39.22 -0.26 1.06 16 4 C -0.14 -1.25 9.98 -39.45 -0.39 -1.64 16 5 C -0.06 -0.61 9.90 -39.43 -0.39 -1.00 16 6 C 0.08 0.93 5.20 -83.52 -0.43 0.49 16 7 N -0.42 -6.36 2.85 -57.60 -0.16 -6.52 16 8 C 0.17 2.53 8.01 -153.80 -1.23 1.30 16 9 C -0.06 -0.55 10.22 36.01 0.37 -0.18 16 10 N -0.28 -5.21 12.17 33.03 0.40 -4.81 16 11 N -0.29 -5.92 11.60 30.73 0.36 -5.56 16 12 C 0.17 3.13 8.01 -88.12 -0.71 2.43 16 13 S 0.00 0.01 21.64 -107.50 -2.33 -2.32 16 14 C -0.12 -2.45 4.87 37.16 0.18 -2.27 16 15 C 0.25 6.10 2.87 -27.88 -0.08 6.02 16 16 H 0.07 1.79 8.14 -51.93 -0.42 1.36 16 17 O -0.56 -14.05 12.32 -35.23 -0.43 -14.49 16 18 C -0.57 -15.36 8.76 -34.44 -0.30 -15.66 16 19 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 20 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 21 N -0.86 -24.85 12.84 55.43 0.71 -24.14 16 22 Si 0.90 21.03 29.54 -169.99 -5.02 16.00 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 26 C -0.05 -0.59 9.92 -39.43 -0.39 -0.99 16 27 C -0.19 -1.78 9.03 -39.46 -0.36 -2.13 16 28 H 0.06 0.23 7.66 -51.93 -0.40 -0.16 16 29 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 30 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 32 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.57 7.95 -51.93 -0.41 0.16 16 36 H 0.09 1.96 8.14 -51.92 -0.42 1.54 16 37 H 0.09 1.84 8.14 -51.92 -0.42 1.42 16 38 H 0.35 7.85 9.04 45.56 0.41 8.27 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 40 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.14 0.96 6.29 -52.49 -0.33 0.63 16 LS Contribution 371.13 15.07 5.59 5.59 Total: -1.00 -33.84 371.13 -8.66 -42.50 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.47 Total: 5.95 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -3.10 Total: -9.32 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 1.31 Total: -41.03 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.64 Total: -17.37 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.33 Total: -2.32 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.84 -8.66 -42.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294890992.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.574 kcal (2) G-P(sol) polarization free energy of solvation -33.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds