Wall clock time and date at job start Tue Mar 31 2020 18:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.35948 * 116.99577 * 2 1 4 4 C 1.38740 * 119.98659 * 180.02562 * 3 2 1 5 5 C 1.38081 * 120.00729 * 180.26008 * 4 3 2 6 6 C 1.38808 * 119.99169 * 359.48740 * 5 4 3 7 7 N 1.40389 * 120.00963 * 180.25648 * 6 5 4 8 8 C 1.36936 * 127.17153 * 295.22993 * 7 6 5 9 9 C 1.50708 * 126.35587 * 359.97053 * 8 7 6 10 10 N 1.30323 * 107.29803 * 179.97438 * 8 7 6 11 11 N 1.28518 * 110.13313 * 0.02562 * 10 8 7 12 12 C 1.31303 * 109.90801 * 359.76030 * 11 10 8 13 13 S 1.76203 * 126.49814 * 180.25918 * 12 11 10 14 14 C 1.80997 * 99.99777 * 0.13600 * 13 12 11 15 15 C 1.53005 * 109.47052 * 180.02562 * 14 13 12 16 16 H 1.09000 * 109.47134 * 59.99810 * 15 14 13 17 17 O 1.42905 * 109.46672 * 299.99839 * 15 14 13 18 18 C 1.50700 * 109.47214 * 180.02562 * 15 14 13 19 19 H 1.08004 * 119.99869 * 359.97438 * 18 15 14 20 20 C 1.37877 * 119.99841 * 180.02562 * 18 15 14 21 21 N 1.31509 * 120.00272 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99852 * 179.97438 * 20 18 15 23 23 H 1.48498 * 109.47392 * 89.99658 * 22 20 18 24 24 H 1.48499 * 109.47250 * 209.99556 * 22 20 18 25 25 H 1.48502 * 109.47135 * 329.99703 * 22 20 18 26 26 C 1.38803 * 119.97887 * 0.48824 * 6 5 4 27 27 C 1.38085 * 119.99438 * 359.77036 * 26 6 5 28 28 H 1.09000 * 109.46926 * 299.99983 * 1 2 3 29 29 H 1.09004 * 109.47064 * 59.99859 * 1 2 3 30 30 H 1.08998 * 109.46709 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.99317 * 359.97438 * 4 3 2 32 32 H 1.07998 * 120.00669 * 179.74783 * 5 4 3 33 33 H 1.08995 * 109.47258 * 89.99269 * 9 8 7 34 34 H 1.08994 * 109.46751 * 210.00109 * 9 8 7 35 35 H 1.09000 * 109.46465 * 329.99636 * 9 8 7 36 36 H 1.08999 * 109.47742 * 299.99732 * 14 13 12 37 37 H 1.09000 * 109.47306 * 60.00008 * 14 13 12 38 38 H 0.96691 * 114.00431 * 299.99677 * 17 15 14 39 39 H 0.97002 * 120.00275 * 180.02562 * 21 20 18 40 40 H 1.08001 * 119.99963 * 179.74751 * 26 6 5 41 41 H 1.08002 * 119.99388 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 3.4317 1.2837 -0.0005 5 6 4.0589 2.5139 0.0049 6 6 3.3031 3.6781 0.0001 7 7 3.9405 4.9290 0.0002 8 6 4.7270 5.4568 0.9892 9 6 5.0767 4.7989 2.2992 10 7 5.1170 6.6336 0.5875 11 7 4.6356 6.8855 -0.5772 12 6 3.9092 5.8724 -0.9894 13 16 3.0540 5.7522 -2.5253 14 6 3.4915 7.3500 -3.2545 15 6 2.8419 7.4760 -4.6340 16 1 1.7588 7.4070 -4.5333 17 8 3.3099 6.4227 -5.4788 18 6 3.2067 8.8061 -5.2414 19 1 3.8383 9.4930 -4.6977 20 6 2.7332 9.1464 -6.4908 21 7 1.9637 8.3102 -7.1527 22 14 3.1848 10.7954 -7.2434 23 1 4.4368 10.6546 -8.0293 24 1 2.0883 11.2489 -8.1363 25 1 3.3882 11.7936 -6.1629 26 6 1.9170 3.6052 0.0002 27 6 1.2905 2.3747 0.0001 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0197 0.3778 -0.0005 32 1 5.1374 2.5702 0.0086 33 1 5.9907 4.2170 2.1810 34 1 5.2287 5.5638 3.0606 35 1 4.2633 4.1401 2.6033 36 1 3.1343 8.1534 -2.6104 37 1 4.5747 7.4192 -3.3548 38 1 4.2674 6.4223 -5.6134 39 1 1.6308 8.5495 -8.0318 40 1 1.3286 4.5109 0.0006 41 1 0.2120 2.3180 0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294890992.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:41 Heat of formation + Delta-G solvation = -2.260200 kcal Electronic energy + Delta-G solvation = -25580.601306 eV Core-core repulsion = 21780.969338 eV Total energy + Delta-G solvation = -3799.631967 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.14676 -41.21926 -38.88619 -37.94719 -35.52810 -34.31083 -33.49880 -32.34218 -31.67992 -30.43114 -28.91360 -28.08095 -27.34450 -24.85189 -23.87664 -23.48792 -22.93149 -21.75378 -19.63299 -19.28500 -19.05934 -17.90776 -17.77641 -16.77727 -16.71540 -16.69867 -16.30483 -16.08449 -15.80470 -15.57828 -15.22953 -14.92116 -14.63270 -14.34939 -14.22794 -13.98912 -13.83029 -13.50066 -13.45242 -13.28175 -12.99431 -12.88628 -12.78579 -12.67390 -12.39720 -12.16390 -12.06495 -11.90634 -11.54620 -11.45319 -11.12959 -10.92477 -10.74843 -10.36239 -10.25164 -9.35911 -8.69638 -8.18554 -6.45016 -0.15498 0.02530 0.11889 0.54770 1.12105 1.41574 1.42248 1.50383 1.53985 1.58868 2.24919 2.38810 2.42189 3.07955 3.33760 3.60509 3.69115 3.82595 3.96178 4.03931 4.10410 4.18182 4.21961 4.30791 4.36553 4.40087 4.41560 4.60160 4.63709 4.68886 4.75782 4.83183 4.86398 4.88918 5.03408 5.09987 5.21157 5.37894 5.47639 5.63679 5.89130 5.94967 6.27296 6.63347 7.26220 7.42521 7.44653 8.86060 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.013722 B = 0.003001 C = 0.002552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.962246 B = 9329.388008 C =10967.405841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.322 6.322 3 C 0.144 3.856 4 C -0.136 4.136 5 C -0.056 4.056 6 C 0.044 3.956 7 N -0.414 5.414 8 C 0.194 3.806 9 C -0.061 4.061 10 N -0.327 5.327 11 N -0.328 5.328 12 C 0.153 3.847 13 S 0.021 5.979 14 C -0.104 4.104 15 C 0.250 3.750 16 H 0.038 0.962 17 O -0.570 6.570 18 C -0.584 4.584 19 H 0.060 0.940 20 C 0.032 3.968 21 N -0.894 5.894 22 Si 0.963 3.037 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.268 1.268 26 C -0.064 4.064 27 C -0.190 4.190 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.122 0.878 31 H 0.165 0.835 32 H 0.148 0.852 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.360 0.640 39 H 0.265 0.735 40 H 0.126 0.874 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.922 -19.363 19.699 27.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.235 6.235 3 C 0.098 3.902 4 C -0.155 4.155 5 C -0.075 4.075 6 C -0.046 4.046 7 N -0.105 5.105 8 C -0.075 4.075 9 C -0.119 4.119 10 N -0.166 5.166 11 N -0.171 5.171 12 C -0.222 4.222 13 S 0.250 5.750 14 C -0.254 4.254 15 C 0.190 3.810 16 H 0.056 0.944 17 O -0.374 6.374 18 C -0.624 4.624 19 H 0.078 0.922 20 C -0.172 4.172 21 N -0.530 5.530 22 Si 0.787 3.213 23 H -0.197 1.197 24 H -0.205 1.205 25 H -0.192 1.192 26 C -0.083 4.083 27 C -0.209 4.209 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.141 0.859 31 H 0.182 0.818 32 H 0.166 0.834 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.205 0.795 39 H 0.074 0.926 40 H 0.144 0.856 41 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.573 -19.246 19.128 27.180 hybrid contribution 0.565 1.463 -0.216 1.583 sum -1.009 -17.784 18.911 25.979 Atomic orbital electron populations 1.23450 0.76045 1.06037 1.02572 1.86105 1.23734 1.25925 1.87757 1.19291 0.92696 0.84710 0.93498 1.20535 0.91646 0.98362 1.04959 1.21020 1.00741 0.89599 0.96131 1.17712 0.92039 0.82049 1.12775 1.43882 1.39019 1.14187 1.13396 1.26152 0.94061 0.92090 0.95201 1.20489 1.04106 1.01138 0.86212 1.73858 1.22555 1.14047 1.06149 1.74648 1.13263 1.22136 1.07053 1.27390 1.05520 0.90300 0.98966 1.85737 1.59888 1.26424 1.02912 1.24449 1.04734 0.94658 1.01525 1.18961 0.93357 0.86623 0.82030 0.94379 1.86518 1.26323 1.52889 1.71707 1.21841 1.33938 1.03129 1.03465 0.92153 1.25845 0.93705 1.00331 0.97272 1.70188 1.32741 1.36906 1.13200 0.85510 0.78109 0.79360 0.78336 1.19669 1.20496 1.19210 1.20995 0.92201 0.99071 0.96067 1.21330 1.01828 0.90433 1.07343 0.91065 0.91841 0.85936 0.81791 0.83413 0.87241 0.87533 0.88531 0.89878 0.89985 0.79452 0.92624 0.85603 0.82121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 16 2 O -0.32 -4.61 10.50 -92.96 -0.98 -5.59 16 3 C 0.14 2.33 6.69 22.51 0.15 2.48 16 4 C -0.14 -2.07 9.98 22.35 0.22 -1.85 16 5 C -0.06 -1.00 9.90 22.37 0.22 -0.78 16 6 C 0.04 1.03 5.20 38.04 0.20 1.23 16 7 N -0.41 -12.23 2.85 -336.15 -0.96 -13.19 16 8 C 0.19 5.45 8.01 137.57 1.10 6.55 16 9 C -0.06 -0.93 10.22 71.24 0.73 -0.20 16 10 N -0.33 -12.06 12.17 -49.40 -0.60 -12.66 16 11 N -0.33 -13.57 11.60 -56.70 -0.66 -14.23 16 12 C 0.15 5.66 8.01 179.47 1.44 7.10 16 13 S 0.02 0.79 21.64 -56.49 -1.22 -0.43 16 14 C -0.10 -4.59 4.87 71.98 0.35 -4.24 16 15 C 0.25 12.86 2.87 29.85 0.09 12.94 16 16 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 17 O -0.57 -29.28 12.32 -148.98 -1.84 -31.12 16 18 C -0.58 -32.27 8.76 25.60 0.22 -32.05 16 19 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 20 C 0.03 1.78 5.40 84.66 0.46 2.24 16 21 N -0.89 -52.61 12.84 21.45 0.28 -52.33 16 22 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 C -0.06 -1.37 9.92 22.37 0.22 -1.15 16 27 C -0.19 -3.14 9.03 22.35 0.20 -2.94 16 28 H 0.07 0.37 7.66 -2.39 -0.02 0.35 16 29 H 0.06 0.47 7.66 -2.38 -0.02 0.45 16 30 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 32 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.10 1.14 7.95 -2.39 -0.02 1.12 16 36 H 0.08 3.74 8.14 -2.40 -0.02 3.72 16 37 H 0.08 3.64 8.14 -2.39 -0.02 3.62 16 38 H 0.36 16.50 9.04 -74.06 -0.67 15.83 16 39 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 40 H 0.13 2.90 8.06 -2.91 -0.02 2.87 16 41 H 0.16 1.85 6.29 -2.91 -0.02 1.84 16 Total: -1.00 -74.50 371.13 3.16 -71.34 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.40 Total: 22.20 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: 6.71 Total: -9.46 kcal Atomic # 7 Polarization: -90.46 SS G_CDS: -1.94 Total: -92.40 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -2.81 Total: -36.71 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -1.22 Total: -0.43 kcal Total: -74.50 3.16 -71.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294890992.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.078 kcal (2) G-P(sol) polarization free energy of solvation -74.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds