Wall clock time and date at job start Tue Mar 31 2020 18:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 110.53257 * 2 1 4 4 C 1.38241 * 119.97087 * 266.88826 * 3 2 1 5 5 C 1.38201 * 120.02228 * 179.76543 * 4 3 2 6 6 C 1.38460 * 119.97728 * 0.51621 * 5 4 3 7 7 F 1.35093 * 120.03007 * 179.76337 * 6 5 4 8 8 C 1.38461 * 119.94424 * 359.74317 * 6 5 4 9 9 C 1.38196 * 119.97522 * 359.97438 * 8 6 5 10 10 N 1.47313 * 110.72808 * 122.91855 * 2 1 3 11 11 C 1.34524 * 106.61940 * 118.37225 * 10 2 1 12 12 O 1.21542 * 123.77468 * 180.20863 * 11 10 2 13 13 N 1.33796 * 112.45830 * 0.37850 * 11 10 2 14 14 C 1.46491 * 124.17833 * 179.86787 * 13 11 10 15 15 C 1.50702 * 109.46957 * 269.69776 * 14 13 11 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72354 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00057 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46646 * 60.00463 * 22 20 18 24 24 H 1.48504 * 109.47036 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47259 * 300.00225 * 22 20 18 26 26 C 1.34773 * 111.63997 * 359.59741 * 13 11 10 27 27 O 1.21230 * 127.15307 * 180.25876 * 26 13 11 28 28 H 1.09000 * 109.46814 * 182.13471 * 1 2 3 29 29 H 1.09001 * 109.47149 * 302.12890 * 1 2 3 30 30 H 1.08991 * 109.46875 * 62.12965 * 1 2 3 31 31 H 1.08000 * 119.99217 * 0.02836 * 4 3 2 32 32 H 1.07999 * 120.01151 * 180.25417 * 5 4 3 33 33 H 1.08001 * 120.01063 * 180.02562 * 8 6 5 34 34 H 1.08007 * 119.98886 * 180.02562 * 9 8 6 35 35 H 0.97001 * 126.69250 * 298.62007 * 10 2 1 36 36 H 1.09004 * 109.47166 * 149.70041 * 14 13 11 37 37 H 1.09000 * 109.47767 * 29.70109 * 14 13 11 38 38 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 39 39 H 0.96996 * 120.00330 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4113 0.0000 4 6 2.3617 2.0352 -1.1958 5 6 2.8419 3.3311 -1.1973 6 6 3.0295 4.0008 0.0000 7 9 3.5034 5.2659 0.0000 8 6 2.7306 3.3729 1.1973 9 6 2.2450 2.0790 1.1960 10 7 2.0514 -0.7487 1.1566 11 6 2.7605 -1.7786 0.6603 12 8 3.3278 -2.6030 1.3500 13 7 2.7745 -1.7919 -0.6776 14 6 3.4713 -2.7974 -1.4833 15 6 4.8773 -2.3317 -1.7617 16 8 5.2597 -1.2650 -1.3291 17 7 5.7117 -3.1033 -2.4862 18 6 6.9926 -2.6823 -2.7347 19 1 7.3331 -1.7325 -2.3495 20 6 7.8527 -3.4775 -3.4820 21 7 7.4383 -4.6329 -3.9511 22 14 9.5977 -2.9034 -3.8211 23 1 10.3141 -2.7107 -2.5347 24 1 10.3055 -3.9247 -4.6343 25 1 9.5604 -1.6183 -4.5644 26 6 2.0633 -0.7693 -1.1922 27 8 1.8865 -0.5175 -2.3648 28 1 -0.3633 -1.0270 0.0383 29 1 -0.3633 0.5465 0.8703 30 1 -0.3633 0.4804 -0.9084 31 1 2.2192 1.5113 -2.1294 32 1 3.0748 3.8198 -2.1318 33 1 2.8762 3.8944 2.1318 34 1 2.0114 1.5892 2.1298 35 1 1.9081 -0.5419 2.0934 36 1 2.9420 -2.9385 -2.4257 37 1 3.5023 -3.7414 -0.9393 38 1 5.4061 -3.9565 -2.8319 39 1 8.0385 -5.1879 -4.4731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299612761.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:42 Heat of formation + Delta-G solvation = -111.904714 kcal Electronic energy + Delta-G solvation = -28987.991509 eV Core-core repulsion = 24617.391823 eV Total energy + Delta-G solvation = -4370.599686 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 335.111 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.97974 -43.81275 -40.48950 -40.01326 -39.57603 -37.48978 -36.41552 -35.80869 -33.41426 -32.66344 -32.19119 -30.20186 -30.00874 -26.88765 -25.79097 -24.38822 -24.10204 -22.83794 -21.81245 -21.03008 -20.04513 -19.32482 -18.74230 -18.50947 -18.00466 -17.44720 -17.30425 -16.79594 -16.66362 -16.53066 -16.39537 -16.30698 -15.78680 -15.62873 -15.52875 -15.14292 -14.83450 -14.52698 -14.35975 -14.19807 -13.77803 -13.57910 -13.46094 -13.37935 -13.29433 -12.90379 -12.73442 -12.51163 -12.26624 -12.15100 -11.95408 -11.59161 -11.46215 -11.26791 -10.71493 -10.32420 -10.16595 -10.11148 -9.74303 -8.52920 -6.02736 -0.08505 0.17035 0.47713 0.98822 1.34930 1.39110 1.50107 1.86027 1.88731 2.00095 2.26744 2.50677 2.69601 3.08117 3.11309 3.14658 3.23844 3.69788 3.72690 3.88218 3.91784 4.06637 4.20663 4.21653 4.32010 4.38764 4.46827 4.64354 4.75206 4.83912 4.87654 5.04826 5.11413 5.14565 5.27797 5.34633 5.72764 5.77824 5.88079 5.94570 6.23226 6.47723 7.00228 7.03892 7.40918 7.94887 8.63760 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011952 B = 0.003693 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.235263 B = 7580.038464 C = 8975.924148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.180 3.820 3 C -0.111 4.111 4 C -0.092 4.092 5 C -0.159 4.159 6 C 0.090 3.910 7 F -0.144 7.144 8 C -0.148 4.148 9 C -0.061 4.061 10 N -0.694 5.694 11 C 0.706 3.294 12 O -0.574 6.574 13 N -0.559 5.559 14 C 0.113 3.887 15 C 0.420 3.580 16 O -0.627 6.627 17 N -0.558 5.558 18 C -0.338 4.338 19 H 0.077 0.923 20 C -0.006 4.006 21 N -0.913 5.913 22 Si 0.993 3.007 23 H -0.273 1.273 24 H -0.266 1.266 25 H -0.272 1.272 26 C 0.529 3.471 27 O -0.482 6.482 28 H 0.082 0.918 29 H 0.114 0.886 30 H 0.088 0.912 31 H 0.132 0.868 32 H 0.143 0.857 33 H 0.167 0.833 34 H 0.169 0.831 35 H 0.454 0.546 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.400 0.600 39 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.123 10.846 9.758 23.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.090 3.910 3 C -0.112 4.112 4 C -0.110 4.110 5 C -0.178 4.178 6 C 0.071 3.929 7 F -0.123 7.123 8 C -0.166 4.166 9 C -0.079 4.079 10 N -0.360 5.360 11 C 0.407 3.593 12 O -0.449 6.449 13 N -0.303 5.303 14 C -0.012 4.012 15 C 0.206 3.794 16 O -0.514 6.514 17 N -0.194 5.194 18 C -0.467 4.467 19 H 0.095 0.905 20 C -0.207 4.207 21 N -0.553 5.553 22 Si 0.816 3.184 23 H -0.198 1.198 24 H -0.190 1.190 25 H -0.197 1.197 26 C 0.317 3.683 27 O -0.353 6.353 28 H 0.101 0.899 29 H 0.133 0.867 30 H 0.107 0.893 31 H 0.150 0.850 32 H 0.161 0.839 33 H 0.185 0.815 34 H 0.187 0.813 35 H 0.303 0.697 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.235 0.765 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.516 11.052 9.586 22.822 hybrid contribution 1.284 -0.061 -0.477 1.371 sum -16.232 10.990 9.109 21.616 Atomic orbital electron populations 1.22105 0.85610 1.05245 1.06480 1.20179 0.99094 0.88811 0.82919 1.19512 1.03321 0.93604 0.94798 1.21238 0.96339 0.94356 0.99085 1.21260 1.02623 0.95613 0.98262 1.18009 0.99430 0.80033 0.95408 1.91488 1.86026 1.37297 1.97486 1.21418 1.01447 0.96106 0.97642 1.20992 0.95909 0.93138 0.97834 1.45410 1.54294 1.26750 1.09529 1.15921 0.79182 0.82816 0.81371 1.90984 1.49339 1.43082 1.61536 1.45876 1.47567 1.28800 1.08068 1.21381 0.90067 0.91542 0.98250 1.20878 0.88761 0.86331 0.83443 1.90509 1.78433 1.25524 1.56959 1.41786 1.11328 1.19984 1.46304 1.19596 0.88696 1.05412 1.33027 0.90498 1.26045 1.03863 0.95243 0.95567 1.69649 1.38752 1.11436 1.35457 0.84997 0.76716 0.78174 0.78497 1.19786 1.18991 1.19713 1.21211 0.76727 0.79856 0.90490 1.90720 1.58377 1.68381 1.17793 0.89909 0.86690 0.89277 0.84978 0.83867 0.81531 0.81332 0.69675 0.84500 0.84959 0.76533 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.97 71.98 0.65 -0.96 16 2 C 0.18 3.74 1.16 2.24 0.00 3.74 16 3 C -0.11 -2.41 4.89 -19.86 -0.10 -2.51 16 4 C -0.09 -2.39 9.17 22.26 0.20 -2.19 16 5 C -0.16 -3.89 10.03 22.31 0.22 -3.67 16 6 C 0.09 2.04 7.30 22.38 0.16 2.20 16 7 F -0.14 -3.41 17.27 44.97 0.78 -2.64 16 8 C -0.15 -2.57 10.03 22.31 0.22 -2.35 16 9 C -0.06 -0.99 9.35 22.26 0.21 -0.78 16 10 N -0.69 -14.35 5.37 -443.25 -2.38 -16.73 16 11 C 0.71 22.78 8.62 179.44 1.55 24.33 16 12 O -0.57 -22.62 17.48 -3.85 -0.07 -22.69 16 13 N -0.56 -18.99 2.09 -777.22 -1.63 -20.61 16 14 C 0.11 4.11 6.18 85.64 0.53 4.64 16 15 C 0.42 20.79 7.85 87.66 0.69 21.48 16 16 O -0.63 -36.02 16.01 -3.07 -0.05 -36.07 16 17 N -0.56 -29.22 5.29 -306.98 -1.62 -30.84 16 18 C -0.34 -19.54 9.68 84.04 0.81 -18.73 16 19 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 20 C -0.01 -0.34 5.50 84.92 0.47 0.13 16 21 N -0.91 -49.20 13.05 21.66 0.28 -48.92 16 22 Si 0.99 43.35 29.55 68.60 2.03 45.38 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 26 C 0.53 16.17 6.45 87.94 0.57 16.74 16 27 O -0.48 -16.57 15.61 -2.87 -0.04 -16.62 16 28 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.13 3.90 5.60 -2.91 -0.02 3.88 16 32 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 33 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.17 1.41 7.11 -2.91 -0.02 1.39 16 35 H 0.45 5.82 8.19 -92.71 -0.76 5.06 16 36 H 0.14 4.23 8.00 -2.38 -0.02 4.21 16 37 H 0.13 4.30 7.85 -2.39 -0.02 4.29 16 38 H 0.40 19.58 7.90 -92.71 -0.73 18.84 16 39 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -79.71 348.89 3.14 -76.57 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: -0.34 Total: 31.08 kcal Atomic # 6 Polarization: 35.90 SS G_CDS: 6.19 Total: 42.09 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -5.35 Total: -117.10 kcal Atomic # 8 Polarization: -75.22 SS G_CDS: -0.16 Total: -75.38 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.78 Total: -2.64 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -79.71 3.14 -76.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299612761.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.336 kcal (2) G-P(sol) polarization free energy of solvation -79.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds