Wall clock time and date at job start Tue Mar 31 2020 18:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47255 * 2 1 4 4 N 1.46502 * 109.47090 * 239.99847 * 2 1 3 5 5 C 1.34964 * 125.96957 * 84.71339 * 4 2 1 6 6 C 1.35247 * 107.86178 * 179.83775 * 5 4 2 7 7 C 1.40433 * 107.86129 * 0.42763 * 6 5 4 8 8 N 1.39981 * 125.97576 * 179.73589 * 7 6 5 9 9 S 1.65605 * 119.99984 * 180.02562 * 8 7 6 10 10 O 1.42104 * 106.40170 * 178.53961 * 9 8 7 11 11 O 1.42100 * 106.40011 * 311.45983 * 9 8 7 12 12 C 1.76199 * 107.21645 * 65.00066 * 9 8 7 13 13 C 1.38636 * 119.75039 * 269.72717 * 12 9 8 14 14 C 1.37611 * 120.25084 * 179.72302 * 13 12 9 15 15 C 1.40721 * 119.74450 * 0.56882 * 14 13 12 16 16 C 1.41390 * 120.24478 * 179.67921 * 15 14 13 17 17 H 1.07997 * 120.00204 * 24.41811 * 16 15 14 18 18 C 1.39945 * 120.00096 * 204.41279 * 16 15 14 19 19 N 1.30825 * 119.99800 * 17.85661 * 18 16 15 20 20 Si 1.86797 * 120.00130 * 197.86035 * 18 16 15 21 21 H 1.48500 * 109.47611 * 59.99852 * 20 18 16 22 22 H 1.48504 * 109.47304 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47026 * 299.99706 * 20 18 16 24 24 C 1.40718 * 119.50873 * 359.70752 * 15 14 13 25 25 C 1.37618 * 119.74565 * 359.97438 * 24 15 14 26 26 N 1.31225 * 108.04624 * 359.73295 * 7 6 5 27 27 H 1.08994 * 109.46857 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46964 * 59.99991 * 1 2 3 29 29 H 1.09003 * 109.46691 * 299.99934 * 1 2 3 30 30 H 1.09000 * 109.47411 * 120.00274 * 2 1 3 31 31 H 1.08994 * 109.46833 * 59.99954 * 3 2 1 32 32 H 1.08998 * 109.47212 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46466 * 300.00356 * 3 2 1 34 34 H 1.07996 * 126.07011 * 0.02562 * 5 4 2 35 35 H 1.08003 * 126.06889 * 180.15942 * 6 5 4 36 36 H 0.97003 * 120.00224 * 0.02562 * 8 7 6 37 37 H 1.08008 * 119.87454 * 359.97438 * 13 12 9 38 38 H 1.08007 * 120.13023 * 180.27666 * 14 13 12 39 39 H 0.97005 * 119.99704 * 180.02562 * 19 18 16 40 40 H 1.07997 * 120.12382 * 179.97438 * 24 15 14 41 41 H 1.08002 * 119.87221 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1877 -0.1392 -2.4163 6 6 2.6561 -1.1004 -3.2445 7 6 2.7689 -2.2888 -2.5049 8 7 3.2130 -3.5228 -2.9943 9 16 3.2871 -4.8349 -1.9866 10 8 3.7364 -5.9251 -2.7797 11 8 3.9573 -4.4008 -0.8112 12 6 1.6357 -5.2170 -1.5054 13 6 1.0993 -4.6365 -0.3665 14 6 -0.1913 -4.9232 0.0156 15 6 -0.9629 -5.8186 -0.7480 16 6 -2.2877 -6.1260 -0.3613 17 1 -2.8491 -5.4294 0.2436 18 6 -2.8717 -7.3328 -0.7625 19 7 -2.1180 -8.3167 -1.1814 20 14 -4.7272 -7.5388 -0.7001 21 1 -5.3678 -6.5227 -1.5732 22 1 -5.0905 -8.8987 -1.1735 23 1 -5.1985 -7.3592 0.6966 24 6 -0.4060 -6.4063 -1.8989 25 6 0.8845 -6.0999 -2.2658 26 7 2.3853 -2.0401 -1.2749 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8899 32 1 3.1301 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.9878 0.8880 -2.6832 35 1 2.8963 -0.9770 -4.2903 36 1 3.4773 -3.6095 -3.9236 37 1 1.6951 -3.9536 0.2209 38 1 -0.6088 -4.4664 0.9008 39 1 -2.5228 -9.1531 -1.4598 40 1 -0.9892 -7.0951 -2.4920 41 1 1.3138 -6.5494 -3.1490 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000314420220.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:29 Heat of formation + Delta-G solvation = 16.926512 kcal Electronic energy + Delta-G solvation = -26796.475697 eV Core-core repulsion = 22997.675728 eV Total energy + Delta-G solvation = -3798.799969 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.10506 -37.48098 -36.55517 -36.18337 -35.10877 -34.00042 -33.95356 -30.20460 -29.93490 -29.34066 -28.80827 -27.46272 -25.75141 -23.01979 -21.42083 -21.17127 -20.94634 -20.27202 -18.48754 -17.54078 -17.33111 -16.93582 -16.47438 -16.17379 -15.44281 -15.10245 -14.67058 -14.30759 -14.05406 -13.61666 -13.38483 -13.32446 -13.13329 -13.10074 -12.53126 -12.40690 -12.31564 -12.09971 -11.80084 -11.65915 -11.65621 -11.41448 -11.31356 -11.29049 -11.23213 -11.15488 -11.02767 -10.80958 -10.42461 -10.25460 -9.62747 -9.47387 -9.39137 -8.72921 -8.12237 -7.88560 -7.58294 -7.08313 -4.74215 1.14910 2.06851 2.33404 2.47545 2.90053 2.91942 2.96899 3.03650 3.06455 3.65014 3.69960 4.28596 4.38681 4.54873 4.72549 4.79304 4.92391 5.02417 5.20599 5.27672 5.40692 5.48594 5.51374 5.64787 5.73624 5.80158 5.86975 5.98013 6.10606 6.19127 6.31569 6.69607 6.74328 6.79585 7.01950 7.13312 7.18750 7.20527 7.43763 7.53062 7.72232 7.84289 7.94768 8.05145 8.38458 8.58146 8.73383 9.82997 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011573 B = 0.004211 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.878111 B = 6648.295154 C = 8380.471825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.157 3.843 3 C -0.162 4.162 4 N -0.358 5.358 5 C 0.071 3.929 6 C -0.290 4.290 7 C 0.323 3.677 8 N -1.024 6.024 9 S 2.683 3.317 10 O -0.977 6.977 11 O -0.961 6.961 12 C -0.779 4.779 13 C 0.025 3.975 14 C -0.245 4.245 15 C 0.143 3.857 16 C -0.438 4.438 17 H 0.086 0.914 18 C 0.073 3.927 19 N -0.766 5.766 20 Si 0.916 3.084 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.262 1.262 24 C -0.185 4.185 25 C -0.017 4.017 26 N -0.302 5.302 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.172 0.828 35 H 0.148 0.852 36 H 0.426 0.574 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.289 0.711 40 H 0.122 0.878 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.711 15.835 -2.507 16.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.055 3.945 3 C -0.221 4.221 4 N -0.142 5.142 5 C -0.076 4.076 6 C -0.323 4.323 7 C 0.064 3.936 8 N -0.773 5.773 9 S 2.783 3.217 10 O -0.968 6.968 11 O -0.951 6.951 12 C -0.876 4.876 13 C 0.004 3.996 14 C -0.266 4.266 15 C 0.140 3.860 16 C -0.465 4.465 17 H 0.104 0.896 18 C -0.149 4.149 19 N -0.388 5.388 20 Si 0.740 3.260 21 H -0.184 1.184 22 H -0.199 1.199 23 H -0.186 1.186 24 C -0.205 4.205 25 C -0.038 4.038 26 N -0.131 5.131 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.123 0.877 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.189 0.811 35 H 0.165 0.835 36 H 0.261 0.739 37 H 0.131 0.869 38 H 0.115 0.885 39 H 0.100 0.900 40 H 0.139 0.861 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.315 14.710 -0.918 15.107 hybrid contribution -1.373 0.120 -1.339 1.922 sum 1.942 14.830 -2.257 15.126 Atomic orbital electron populations 1.22264 0.93494 1.04133 1.02627 1.21256 0.94890 0.92256 0.86069 1.22192 1.02280 0.94169 1.03430 1.48418 1.51183 1.06258 1.08318 1.22260 1.00272 0.99590 0.85466 1.21097 1.17924 0.91734 1.01544 1.18702 0.96377 0.86654 0.91834 1.53336 1.78001 1.20229 1.25715 1.01696 0.75805 0.71495 0.72693 1.93520 1.82029 1.50447 1.70818 1.93513 1.73635 1.81265 1.46721 1.28913 1.24042 1.21977 1.12705 1.20244 0.94496 0.92796 0.92021 1.20976 0.94920 1.08446 1.02258 1.17849 0.91841 0.87588 0.88771 1.19879 0.97812 1.02002 1.26848 0.89629 1.26127 1.01400 0.95089 0.92303 1.69828 1.38288 1.03004 1.27698 0.86218 0.81139 0.78542 0.80136 1.18443 1.19908 1.18596 1.21307 0.95141 1.05166 0.98903 1.20266 0.94193 0.93179 0.96118 1.77670 1.25285 0.93887 1.16229 0.90790 0.92081 0.90681 0.87702 0.90060 0.91487 0.91657 0.81103 0.83473 0.73854 0.86940 0.88490 0.89960 0.86061 0.87983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 9.52 37.16 0.35 -1.31 16 2 C 0.16 1.66 3.93 -67.93 -0.27 1.39 16 3 C -0.16 -1.12 8.84 37.16 0.33 -0.79 16 4 N -0.36 -4.99 3.52 -54.87 -0.19 -5.18 16 5 C 0.07 0.83 10.58 -17.24 -0.18 0.65 16 6 C -0.29 -3.86 10.83 -39.82 -0.43 -4.29 16 7 C 0.32 5.53 7.72 -154.55 -1.19 4.34 16 8 N -1.02 -17.24 5.91 31.39 0.19 -17.06 16 9 S 2.68 56.10 5.49 -107.50 -0.59 55.51 16 10 O -0.98 -21.75 17.26 -57.17 -0.99 -22.74 16 11 O -0.96 -22.20 16.47 -57.17 -0.94 -23.14 16 12 C -0.78 -18.31 5.93 -39.29 -0.23 -18.54 16 13 C 0.02 0.59 8.66 -39.66 -0.34 0.25 16 14 C -0.25 -6.05 9.80 -38.87 -0.38 -6.43 16 15 C 0.14 3.74 5.58 -106.82 -0.60 3.15 16 16 C -0.44 -11.00 9.05 -37.74 -0.34 -11.34 16 17 H 0.09 2.02 7.91 -52.49 -0.41 1.61 16 18 C 0.07 1.72 5.14 -17.34 -0.09 1.63 16 19 N -0.77 -18.79 10.95 55.55 0.61 -18.18 16 20 Si 0.92 17.34 29.59 -169.99 -5.03 12.30 16 21 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 22 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 23 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 24 C -0.18 -4.78 8.70 -38.87 -0.34 -5.12 16 25 C -0.02 -0.42 9.49 -39.66 -0.38 -0.79 16 26 N -0.30 -5.53 10.04 31.41 0.32 -5.21 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.37 7.15 -51.93 -0.37 0.00 16 34 H 0.17 1.23 7.26 -52.49 -0.38 0.85 16 35 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 36 H 0.43 5.56 8.96 -34.47 -0.31 5.25 16 37 H 0.11 2.57 6.86 -52.48 -0.36 2.21 16 38 H 0.10 2.21 8.06 -52.48 -0.42 1.79 16 39 H 0.29 6.38 8.30 -40.82 -0.34 6.04 16 40 H 0.12 3.16 6.15 -52.49 -0.32 2.83 16 41 H 0.10 2.28 7.60 -52.49 -0.40 1.88 16 LS Contribution 359.45 15.07 5.42 5.42 Total: -1.00 -33.50 359.45 -10.38 -43.88 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -5.07 Total: 11.62 kcal Atomic # 6 Polarization: -33.13 SS G_CDS: -4.09 Total: -37.22 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.92 Total: -45.63 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -1.93 Total: -45.88 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.30 kcal Atomic # 16 Polarization: 56.10 SS G_CDS: -0.59 Total: 55.51 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.50 -10.38 -43.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314420220.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.804 kcal (2) G-P(sol) polarization free energy of solvation -33.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds