Wall clock time and date at job start Tue Mar 31 2020 18:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47255 * 2 1 4 4 N 1.46502 * 109.47090 * 239.99847 * 2 1 3 5 5 C 1.34964 * 125.96957 * 84.71339 * 4 2 1 6 6 C 1.35247 * 107.86178 * 179.83775 * 5 4 2 7 7 C 1.40433 * 107.86129 * 0.42763 * 6 5 4 8 8 N 1.39981 * 125.97576 * 179.73589 * 7 6 5 9 9 S 1.65605 * 119.99984 * 180.02562 * 8 7 6 10 10 O 1.42104 * 106.40170 * 178.53961 * 9 8 7 11 11 O 1.42100 * 106.40011 * 311.45983 * 9 8 7 12 12 C 1.76199 * 107.21645 * 65.00066 * 9 8 7 13 13 C 1.38636 * 119.75039 * 269.72717 * 12 9 8 14 14 C 1.37611 * 120.25084 * 179.72302 * 13 12 9 15 15 C 1.40721 * 119.74450 * 0.56882 * 14 13 12 16 16 C 1.41390 * 120.24478 * 179.67921 * 15 14 13 17 17 H 1.07997 * 120.00204 * 24.41811 * 16 15 14 18 18 C 1.39945 * 120.00096 * 204.41279 * 16 15 14 19 19 N 1.30825 * 119.99800 * 17.85661 * 18 16 15 20 20 Si 1.86797 * 120.00130 * 197.86035 * 18 16 15 21 21 H 1.48500 * 109.47611 * 59.99852 * 20 18 16 22 22 H 1.48504 * 109.47304 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47026 * 299.99706 * 20 18 16 24 24 C 1.40718 * 119.50873 * 359.70752 * 15 14 13 25 25 C 1.37618 * 119.74565 * 359.97438 * 24 15 14 26 26 N 1.31225 * 108.04624 * 359.73295 * 7 6 5 27 27 H 1.08994 * 109.46857 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46964 * 59.99991 * 1 2 3 29 29 H 1.09003 * 109.46691 * 299.99934 * 1 2 3 30 30 H 1.09000 * 109.47411 * 120.00274 * 2 1 3 31 31 H 1.08994 * 109.46833 * 59.99954 * 3 2 1 32 32 H 1.08998 * 109.47212 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46466 * 300.00356 * 3 2 1 34 34 H 1.07996 * 126.07011 * 0.02562 * 5 4 2 35 35 H 1.08003 * 126.06889 * 180.15942 * 6 5 4 36 36 H 0.97003 * 120.00224 * 0.02562 * 8 7 6 37 37 H 1.08008 * 119.87454 * 359.97438 * 13 12 9 38 38 H 1.08007 * 120.13023 * 180.27666 * 14 13 12 39 39 H 0.97005 * 119.99704 * 180.02562 * 19 18 16 40 40 H 1.07997 * 120.12382 * 179.97438 * 24 15 14 41 41 H 1.08002 * 119.87221 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1877 -0.1392 -2.4163 6 6 2.6561 -1.1004 -3.2445 7 6 2.7689 -2.2888 -2.5049 8 7 3.2130 -3.5228 -2.9943 9 16 3.2871 -4.8349 -1.9866 10 8 3.7364 -5.9251 -2.7797 11 8 3.9573 -4.4008 -0.8112 12 6 1.6357 -5.2170 -1.5054 13 6 1.0993 -4.6365 -0.3665 14 6 -0.1913 -4.9232 0.0156 15 6 -0.9629 -5.8186 -0.7480 16 6 -2.2877 -6.1260 -0.3613 17 1 -2.8491 -5.4294 0.2436 18 6 -2.8717 -7.3328 -0.7625 19 7 -2.1180 -8.3167 -1.1814 20 14 -4.7272 -7.5388 -0.7001 21 1 -5.3678 -6.5227 -1.5732 22 1 -5.0905 -8.8987 -1.1735 23 1 -5.1985 -7.3592 0.6966 24 6 -0.4060 -6.4063 -1.8989 25 6 0.8845 -6.0999 -2.2658 26 7 2.3853 -2.0401 -1.2749 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8899 32 1 3.1301 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.9878 0.8880 -2.6832 35 1 2.8963 -0.9770 -4.2903 36 1 3.4773 -3.6095 -3.9236 37 1 1.6951 -3.9536 0.2209 38 1 -0.6088 -4.4664 0.9008 39 1 -2.5228 -9.1531 -1.4598 40 1 -0.9892 -7.0951 -2.4920 41 1 1.3138 -6.5494 -3.1490 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000314420220.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:28 Heat of formation + Delta-G solvation = -4.947755 kcal Electronic energy + Delta-G solvation = -26797.424236 eV Core-core repulsion = 22997.675728 eV Total energy + Delta-G solvation = -3799.748508 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 335.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.16668 -39.38663 -38.25463 -37.26894 -36.89370 -35.82228 -35.11540 -32.09341 -31.32278 -30.96502 -29.85865 -28.12409 -27.63771 -24.00905 -23.29987 -22.99487 -22.21159 -21.34954 -20.00214 -19.41409 -18.63022 -18.40247 -18.03519 -17.38316 -17.14547 -16.30405 -16.13859 -15.81526 -15.29062 -15.16039 -14.99020 -14.52056 -14.37765 -14.14166 -14.01855 -13.97452 -13.55944 -13.26723 -13.21262 -13.11378 -13.08353 -13.00710 -12.94815 -12.90031 -12.67866 -12.56849 -12.11306 -12.03712 -11.93325 -11.60158 -11.36694 -11.29879 -11.19220 -9.88429 -9.81526 -9.53093 -9.22632 -8.88129 -6.66939 -0.50861 0.47879 1.04435 1.09295 1.34041 1.40223 1.46935 1.49725 1.91513 2.10136 2.20266 2.50742 2.83309 3.47503 3.51774 3.57985 3.93074 4.00773 4.04455 4.18443 4.28438 4.40250 4.57869 4.70743 4.78865 4.83132 4.87163 4.88330 4.92550 4.94086 4.99297 5.11110 5.23488 5.24258 5.30911 5.52372 5.59668 5.64744 5.75746 5.90561 5.99741 6.14952 6.29396 6.46676 6.66652 6.80211 6.83018 8.07043 Molecular weight = 335.11amu Principal moments of inertia in cm(-1) A = 0.011573 B = 0.004211 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2418.878111 B = 6648.295154 C = 8380.471825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 C -0.152 4.152 4 N -0.360 5.360 5 C 0.087 3.913 6 C -0.298 4.298 7 C 0.292 3.708 8 N -1.011 6.011 9 S 2.718 3.282 10 O -0.992 6.992 11 O -0.984 6.984 12 C -0.793 4.793 13 C 0.026 3.974 14 C -0.262 4.262 15 C 0.116 3.884 16 C -0.465 4.465 17 H 0.092 0.908 18 C 0.034 3.966 19 N -0.798 5.798 20 Si 0.994 3.006 21 H -0.256 1.256 22 H -0.263 1.263 23 H -0.254 1.254 24 C -0.208 4.208 25 C -0.023 4.023 26 N -0.360 5.360 27 H 0.032 0.968 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.223 0.777 35 H 0.177 0.823 36 H 0.443 0.557 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.299 0.701 40 H 0.113 0.887 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.868 18.298 -3.300 18.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.045 3.955 3 C -0.210 4.210 4 N -0.144 5.144 5 C -0.060 4.060 6 C -0.331 4.331 7 C 0.034 3.966 8 N -0.765 5.765 9 S 2.815 3.185 10 O -0.983 6.983 11 O -0.974 6.974 12 C -0.888 4.888 13 C 0.006 3.994 14 C -0.283 4.283 15 C 0.112 3.888 16 C -0.492 4.492 17 H 0.110 0.890 18 C -0.185 4.185 19 N -0.420 5.420 20 Si 0.813 3.187 21 H -0.180 1.180 22 H -0.187 1.187 23 H -0.178 1.178 24 C -0.228 4.228 25 C -0.043 4.043 26 N -0.189 5.189 27 H 0.051 0.949 28 H 0.092 0.908 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.121 0.879 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.239 0.761 35 H 0.194 0.806 36 H 0.282 0.718 37 H 0.135 0.865 38 H 0.124 0.876 39 H 0.110 0.890 40 H 0.131 0.869 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.466 17.158 -1.705 17.418 hybrid contribution -1.026 -0.529 -1.080 1.581 sum 1.441 16.630 -2.785 16.923 Atomic orbital electron populations 1.22219 0.93122 1.01958 1.04546 1.21591 0.95197 0.94090 0.84587 1.22164 1.01917 0.91319 1.05561 1.48739 1.50618 1.05009 1.10054 1.23057 0.97763 1.01298 0.83903 1.21496 1.18143 0.90348 1.03077 1.19093 0.97565 0.87295 0.92602 1.52697 1.78144 1.19519 1.26175 1.00601 0.74135 0.71484 0.72287 1.93490 1.81819 1.51975 1.70971 1.93479 1.73581 1.81803 1.48527 1.29352 1.25362 1.21531 1.12532 1.20330 0.94285 0.92599 0.92208 1.21162 0.95474 1.08888 1.02761 1.18184 0.92860 0.88396 0.89331 1.20195 0.97934 1.03128 1.27936 0.89031 1.27068 1.06395 0.93969 0.91102 1.69865 1.40652 1.03742 1.27772 0.85064 0.74318 0.78906 0.80423 1.17963 1.18742 1.17820 1.21340 0.96024 1.06029 0.99390 1.20483 0.93922 0.93177 0.96687 1.77515 1.26867 0.96964 1.17564 0.94902 0.90783 0.88126 0.89561 0.87934 0.91949 0.89516 0.76101 0.80602 0.71768 0.86506 0.87642 0.88957 0.86892 0.86499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 9.52 71.98 0.69 -2.34 16 2 C 0.15 2.90 3.93 44.99 0.18 3.08 16 3 C -0.15 -1.58 8.84 71.98 0.64 -0.95 16 4 N -0.36 -9.59 3.52 -327.52 -1.15 -10.75 16 5 C 0.09 1.75 10.58 83.52 0.88 2.64 16 6 C -0.30 -7.23 10.83 22.11 0.24 -6.99 16 7 C 0.29 9.82 7.72 133.39 1.03 10.85 16 8 N -1.01 -33.73 5.91 -54.61 -0.32 -34.05 16 9 S 2.72 115.02 5.49 -56.49 -0.31 114.71 16 10 O -0.99 -44.23 17.26 -128.00 -2.21 -46.44 16 11 O -0.98 -46.26 16.47 -128.00 -2.11 -48.37 16 12 C -0.79 -38.38 5.93 22.46 0.13 -38.25 16 13 C 0.03 1.28 8.66 22.22 0.19 1.47 16 14 C -0.26 -13.53 9.80 22.73 0.22 -13.31 16 15 C 0.12 6.31 5.58 -21.29 -0.12 6.19 16 16 C -0.47 -24.01 9.05 23.46 0.21 -23.79 16 17 H 0.09 4.44 7.91 -2.91 -0.02 4.41 16 18 C 0.03 1.62 5.14 85.26 0.44 2.06 16 19 N -0.80 -39.85 10.95 21.83 0.24 -39.61 16 20 Si 0.99 35.14 29.59 68.60 2.03 37.17 16 21 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16 22 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 23 H -0.25 -8.65 7.11 99.48 0.71 -7.94 16 24 C -0.21 -11.19 8.70 22.73 0.20 -10.99 16 25 C -0.02 -1.13 9.49 22.22 0.21 -0.92 16 26 N -0.36 -13.23 10.04 -54.55 -0.55 -13.78 16 27 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.99 8.14 -2.39 -0.02 1.98 16 31 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.09 0.56 7.15 -2.38 -0.02 0.54 16 34 H 0.22 1.99 7.26 -2.91 -0.02 1.97 16 35 H 0.18 3.04 8.06 -2.91 -0.02 3.02 16 36 H 0.44 11.16 8.96 -96.74 -0.87 10.30 16 37 H 0.12 5.60 6.86 -2.91 -0.02 5.58 16 38 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 39 H 0.30 13.29 8.30 -92.70 -0.77 12.52 16 40 H 0.11 6.15 6.15 -2.91 -0.02 6.13 16 41 H 0.12 5.35 7.60 -2.91 -0.02 5.33 16 Total: -1.00 -75.91 359.45 0.96 -74.95 By element: Atomic # 1 Polarization: 37.22 SS G_CDS: 0.20 Total: 37.42 kcal Atomic # 6 Polarization: -76.40 SS G_CDS: 5.14 Total: -71.26 kcal Atomic # 7 Polarization: -96.41 SS G_CDS: -1.79 Total: -98.19 kcal Atomic # 8 Polarization: -90.49 SS G_CDS: -4.32 Total: -94.81 kcal Atomic # 14 Polarization: 35.14 SS G_CDS: 2.03 Total: 37.17 kcal Atomic # 16 Polarization: 115.02 SS G_CDS: -0.31 Total: 114.71 kcal Total: -75.91 0.96 -74.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000314420220.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.006 kcal (2) G-P(sol) polarization free energy of solvation -75.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds